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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1008 fasta sequence
[CGCGCACATGTGGCCTTTTTTTTTTTTTTTTAAACATTAACAATTTCATATTTATTTAACATCACTACATTTAAAAGCAACTTCGCCTTACATCACACACTCACATTTTCCGCCAAGTAACTCATTCAATCGGTAGGCTCATCAGCTTTAGACTTTTGCTCTTGATTCCATCGAAGGTGTAAGTCGGGTTGACTTTTACAAATTC-ATCGTATTGCATTTCTAGATCCGTTTTAAAGCCAACCTTTGCGGCCGGTA-TTTG-TGAACCAATGGCGG-TGAAA-TTGGTGCTCGTAAGTCGCAAGCCAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCAATTCCGCGCCCACGGTAGCGACTGTTCACGC-TCAA-TCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATT-T-TTGCATGCTTT-CCGTT-TTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCGCTGAGCAGGTAATGCCAGAATGCGAGCATTTCT-TCATAGGACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT-CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTCCTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTAGCTTCAGCTCTTGCCAACGATTGACAACGAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTT]
[-] EMBL CNS09ECV [CGCGCACATGTGGCCTTTTTTTTTTTTTTTTAAACATTAACAATTTCATATTTATTTAACATCACTACATTTAAAAGCAACTTCGCCTTACATCACACACTCACATTTTCCGCCAAGTAACTCATTCAATCGGTAGGCTCATCAGCTTTAGACTTTTGCTCTTGATTCCATCGAAGGTGTAAGTCGGGTTGACTTTTACAAATTC ATCGTATTGCATTTCTAGATCCGTTTTAAAGCCAACCTTTGCGGCCGGTA TTTG TGAACCAATGGCGG TGAAA TTGGTGCTCGTAAGTCGCAAGCCAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCAATTCCGCGCCCACGGTAGCGACTGTTCACGC TCAA TCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATT T TTGCATGCTTT CAGTT TTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCGCTGAGCAGGTAATGCCAGAATGCGAGCATTTCT TCATAGGACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGt ]
[+] EMBL CNS09HSA [ ATTTCATATTTATTTAACATCACTACATTTAAAAGCAACTTCGCCTTACATCACACACTCACATTTTCCGCCAAGTAACTCATTCAATCGGTAGGCTCATCAGCTTTAGACTTTTGCTCTTGATTCCATCGAAGGTGTAAGTCGGGTTGACTTTTACAAATTC ATCGTATTGCATTTCTAGATCCGTTTTAAAGCCAACCTTTGCGGCCGGTATTTTGTTGAACCAATGGCGGTTGAAATTTGGTGCTCGTAAGTTGCAAGCCAAATGCCCGGCAAATCGG ]
[+] EMBL CNS09ECW [ TTAACATCACTACATTTAAAAGCAACTTCGCCTTACATCACACACTCACATTTTCCGCCAAGTAACTCATTCAATCGGTAGGCTCATCAGCTTTAGACTTTTGCTCTTGATTCCATCGAAGGTGTAAGTCGGGTTGACTTTTACAAATTC ATCGTATTGCATTTCTAGATCCGTTTTAAAGCCAACCTTTGCGGCCGGTA TTTG TGAACCAATGGCGG TGAAA TTGGTGCTCGTAAGTCGCAAGCCAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCAATTCCGCGCCCACGGTAGCGACTGTTCACGC TCAA TCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATT T TTGCATGCTTT CAGTT TTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCGCTGAGCAGGTAATGCCAGAATGCGAGCATTTCT TCATAGGACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTCCTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTAGCTTCAGCTCTTGCCAACGATTGACAACGAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTT]
[-] EMBL BM582796 [ AAACTCAAACTCACTGCATTTCTAGATCCGTTTTAAAGCCAACCTTTGCGGCCGGTA TTTG TGAACCAATGGCGG TGAAA TTGGTGCTCGTAAGTCGCAAGCCAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCGATTCCGCGCCCACGGTAGCGACTGTTCACGC TCAA TCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATT T TTGCATGCTTT CCGTT TTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCACTGAGCAGGTAATGCCAGAATGCGAGCATTTCT TCATAGGATGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTcgg ]
[-] EMBL BM637910 [ GCGGCCGGTA TTTG TGAACCAATGGCGG TGAAA TTGGTGCTCGTAAGTCGCAAGCCAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCAATTCCGCGCCCACGGTAGCGACTGTTCACGC TCAA TCCGTACGCCGTAAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATT T TTGCATGCTTT CCGTT TTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTATAGCATACTATGGTAAACTTCTCGCTGAGCAGGTAATGCCAGAATGCGAGAATTTCT TCATAGGACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTTGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACcgg ]
[-] EMBL AL694976 [ CTTTCAGTATTTCGGTGGCGATTCCGCGCCCACGGTAGCGACTATTCACGCGTCAAGTCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATTGTGTTGCATGCTTTGCCGTTGTTTATCAAATCCGTTAGGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCACTGAACAGGTAATGCCAGAATGCGAGCATTTCTGTCATA GACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCTGCTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCAGGAGCTTCGAACGTCCACCACACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATAATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTCCTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTAGCTTCAGCTCTTttaaccctg ]
[-] EMBL CNS09HS9 [ TTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCGCTGAGCAGGTAATGCCAGAATGCGAGCATTTCT TCATAGGACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGt ]
consensusID : consensus_7764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[GAATGCCGAGCATTTCTTCATAGGACGCGGGNATGTCGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCTNTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCTACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTCCTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTGCAGCTTCAGCTCTTGCCAACGATACACTCGTGCGGATTCTTGCC]
[-] EMBL BX469771 [GAATGCCGAGCATTTCTTCATAGGACGCGGGNATGTCGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCTNTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCTACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTCCTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTGCAGCTTCAGCTCTTGCCAACGATACACTCGTGCGGATTCTTGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7764#0 CGCGCACATGTGGCCTTTTTTTTTTTTTTTTAAACATTAACAATTTCATATTTATTTAAC 60
consensus_7764#1 ------------------------------------------------------------
consensus_7764#0 ATCACTACATTTAAAAGCAACTTCGCCTTACATCACACACTCACATTTTCCGCCAAGTAA 120
consensus_7764#1 ------------------------------------------------------------
consensus_7764#0 CTCATTCAATCGGTAGGCTCATCAGCTTTAGACTTTTGCTCTTGATTCCATCGAAGGTGT 180
consensus_7764#1 ------------------------------------------------------------
consensus_7764#0 AAGTCGGGTTGACTTTTACAAATTCATCGTATTGCATTTCTAGATCCGTTTTAAAGCCAA 240
consensus_7764#1 ------------------------------------------------------------
consensus_7764#0 CCTTTGCGGCCGGTATTTGTGAACCAATGGCGGTGAAATTGGTGCTCGTAAGTCGCAAGC 300
consensus_7764#1 ------------------------------------------------------------
consensus_7764#0 CAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCAATTCCGCGCCCAC 360
consensus_7764#1 ------------------------------------------------------------
consensus_7764#0 GGTAGCGACTGTTCACGCTCAATCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTT 420
consensus_7764#1 ------------------------------------------------------------
consensus_7764#0 CGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATTTTTGCATGCTTT 480
consensus_7764#1 ------------------------------------------------------------
consensus_7764#0 CCGTTTTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGT 540
consensus_7764#1 ------------------------------------------------------------
consensus_7764#0 TGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCGCTGA 600
consensus_7764#1 ------------------------------------------------------------
consensus_7764#0 GCAGGTAATGCCAGAATGC-GAGCATTTCTTCATAGGACGCGGGAATGT-GTCGAACCCG 658
consensus_7764#1 -------------GAATGCCGAGCATTTCTTCATAGGACGCGGGNATGTCGTCGAACCCG 47
****** ************************ **** **********
consensus_7764#0 GCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATC 718
consensus_7764#1 GCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATC 107
************************************************************
consensus_7764#0 ATCGAATCGATCTTCCGTTAAGTCCTCTACACGGTACGTCACCAGCGCACCATCCTCACG 778
consensus_7764#1 ATCGAATCGATCTTCCGTTAAGTCCTNTACACGGTACGTCACCAGCGCACCATCCTCACG 167
************************** *********************************
consensus_7764#0 GTCCGGATCGGGAGCTTCGAACGTCC-ACCAAACATTCGGAAAAGGTACGTTGGCCGGTC 837
consensus_7764#1 GTCCGGATCGGGAGCTTCGAACGTCCTACCAAACATTCGGAAAAGGTACGTTGGCCGGTC 227
************************** *********************************
consensus_7764#0 GTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTC 897
consensus_7764#1 GTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTC 287
************************************************************
consensus_7764#0 CTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTT--AGCTTCAGCTCTTGCCAACG 955
consensus_7764#1 CTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTGCAGCTTCAGCTCTTGCCAACG 347
************************************** ********************
consensus_7764#0 ATTGACA-ACGAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTT 1008
consensus_7764#1 ATACACTCGTGCGGATTCTTGCC------------------------------- 370
** ** * * ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||