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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 909 fasta sequence
[TTCTCCACCGCTCACGATGCGTCAGTTGCTTTGACAGGCACACT-TCTCTCTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTATCT-GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCAGGGTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCG-GGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCT-CTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTC-TTTTTGCGTGAAATAAAAAAAACACACACCTTCCTTGAAAC-AGAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGTTGGTTCCG]
[+] EMBL CNS0979X [TTCTCCACCGCTCACGATGCGTCAGTTGCTTTGACAGGCACACA TTTCTCTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTATCT GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCAGGTTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCG GGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCT CTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTCTTTTTTGCGTGAAATAAAAAAAACACACA ]
[-] EMBL CNS09EGN [ GCCCACTGGCTCTTTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTTTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAAAAAACCCTACCCGAAATCGCGCTTTTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATTTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCTTCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTTTCTGCTGCAAAAAGTTTTT GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTTGGGTCTTCGGCAAACCGCAGGGTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCGCGGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGGGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCT CTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTC TTTTTGCGTGAAATAAAAAAAACACACACCTTCCTTGAAACAAGAAAAAAAAAAAA ]
[+] EMBL CNS0914S [ gcCT ACTGGCTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTACCT GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCAGGGAACGGTGGCTCGCGTCCACATCGGCCAGCCGATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCG GGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGACTTTCGGCCTAAGCGTGCCTGCTTC ]
[+] EMBL CNS09AAH [ tggCTCTTTTCTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCCACCAGTATCTGGGTGACGTTCTGCGG ]
[+] EMBL CNS0928N [ cctattggCTCTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTACCT GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCAGGGAACGGTGGCTCGCGTCCACATCGGCCAGCCGATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCC ]
[+] EMBL CNS08M07 [ GTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTATCT GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCA GGTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCG GGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCT CTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTC TTTTTGCGTGAAATAAAACAAACACACACCTTCCTTGAAAC AGAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGTTGGTTCCG]
consensusID : consensus_7779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence
[CTGTTGGCCTACTGGCTTTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTTTCTGGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGCTTCGGCAAACCGCAGGGTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCGGGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCTCTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTCTTTTTGCGTGAAATAAAAAAAAAAAA]
[-] EMBL CNS08M08 [CTGTTGGCCTACTGGCTTTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTTTCTGGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGCTTCGGCAAACCGCAGGGTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCGGGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCTCTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTCTTTTTGCGTGAAATAAAAAAAAAAAA]
[-] EMBL CNS09AAI [ ACGCAACCGTTTTTCGGCCTAAGTGCGCCTCTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7779#0 TTCTCCACCGCTCACGATGCGTCAGTTGCTTTGACAGGCACACTTCTCTCTTTTTCCTCG 60
consensus_7779#1 -------------------------------CTGTTGGCCTACTGG-CTTTTTTTCCTCG 28
*** *** ** **********
consensus_7779#0 TACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTT 120
consensus_7779#1 TACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTT 88
************************************************************
consensus_7779#0 ATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATC 180
consensus_7779#1 ATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATC 148
************************************************************
consensus_7779#0 CGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCT 240
consensus_7779#1 CGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCT 208
************************************************************
consensus_7779#0 GCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCC 300
consensus_7779#1 GCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCC 268
************************************************************
consensus_7779#0 GTATCTGCTGCAACAAGTATCTGGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTA 360
consensus_7779#1 GTATCTGCTGCAACAAGTTTCTGGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTA 328
****************** *****************************************
consensus_7779#0 TGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTG 420
consensus_7779#1 TGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTG 388
************************************************************
consensus_7779#0 ATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCAGGGTACGGTGGCTCGCG 480
consensus_7779#1 ATCGGCTCCAAACAGGAATGCGTGG---CTTCGGCAAACCGCAGGGTACGGTGGCTCGCG 445
************************* ********************************
consensus_7779#0 TCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCA 540
consensus_7779#1 TCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCA 505
************************************************************
consensus_7779#0 TCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCGGGTCGCCAGAAGATCTTCGTCTCGA 600
consensus_7779#1 TCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCGGGTCGCCAGAAGATCTTCGTCTCGA 565
************************************************************
consensus_7779#0 AGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCC 660
consensus_7779#1 AGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCC 625
************************************************************
consensus_7779#0 GTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAAT 720
consensus_7779#1 GTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAAT 685
************************************************************
consensus_7779#0 GGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCTCTTCGCCCTCGGGAAAG 780
consensus_7779#1 GGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCTCTTCGCCCTCGGGAAAG 745
************************************************************
consensus_7779#0 CGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTCTTTTTGCGTGAAATAAAAAA 840
consensus_7779#1 CGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTCTTTTTGCGTGAAATAAAAAA 805
************************************************************
consensus_7779#0 AACACACACCTTCCTTGAAACAGAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTG 900
consensus_7779#1 AAAAAA------------------------------------------------------ 811
** * *
consensus_7779#0 TTGGTTCCG 909
consensus_7779#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||