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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1821 fasta sequence
[CCGGGCACCGGCGCCTTCGGAACGCTAGGATTCGGCGGGGCCACCGGTGGAACGACGACGGCATTCGGAGCGACCCCCGCCAGTTCGGCACCGACGTTCGGGTTCGGCACCAACACTGCTACAGCGGCAACACCCGCGTTCGGTGGTTTCGGTACGGCCACATCGACCGCTGGTACCGGATTCGGAGGATTTGGAGCCACCACTGCCACCAGCACGAGTGCTCCAGCGTTCGGTGGGTTCGGCGCGACCGCACAACCGTTCGGCAGTTCGATAGCGACCACCTCCGCCCCATCGTTCTTCGGTGGGCTTGGAGCGAGCCAGCCACAAGCAAGCACGGCCACCGGGTTCGGTGGCTTCGGCACTGGCAGCACGTTTGGTGCGTCGACTTTTGGCCAGCCGGCCGCCGGTGGATTAAACTTTGGACAGTCAGCGTTCGGGCAGCAGCAGCAGCAACAGCAGCAGCTGCAACAACAACAACAGCAGCTCGCTCAAGCCCTCTCGCCCGAGGAAGCGTTCGTGCAGTCCGTGTTCAATGTGTCCATCTTTGGCGACGAGCGGGACACGGTCATTTCGAAATGGAACTACCTGCAGGCGATGCTCGGTACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTCCAAC-TTTCTGTGCCGGTTCAAGACGATGGGCTACAGCAAGCTGCCCGGCCGGGACAACAAAACCGGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAGTTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAGAACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCAACCATCTCGAACGAGGTGAAGCGCGTGCTGGCCACCGAGGTGGCCAGCTACCTCAATCAACCGATGCCAAAGCAGCAGCTTACCCAGCTCGGCATTGAGTCGGTCGTTGCGTTGGTGCTGCCGGAGGAGGACCAGCTGAAGGAGTATCTGGACAATCCGCCCAAGGGTATCGATCCGCGCATGTGGGAACAGGCCAAGATGGATAATCCCGACCCGAAGAGATTCATACCGGTGCCGATGATTGGTTTTCAGGATCTCAAATGGCGCATCAAGTGTCAGGAGAACGAAACCGAAATCCATGCCTCGTACCTTGCGAAGGTGGAGAAAGAGATCGCCGAGCTGAAGCAGCGGCACATGAACACGACCGCCAAGATAGCGGAGCATCGGCGCAACTTTGCCGAGCTGAGCCACCGCATACTGCGCGTCATTGTGAAGCAGGAAAGTACGCGCAAGCTTGGGCTGGCGCTGTCCCCGGAGGAGGAAGCGATACGGACGAAGCTGGAAAACATGCACGCGCTCGTGTCCACCCCGACCCAGTTCCGGGGCCGGCTGAGCGAGCTGCTGTCGCAGATGCGCATGCAGCGGAACCAGTGGGCACACGGCAACTTCCTGAACGAGTACACGCTGGATAAGGACGCCACGCAGGAGATGCAATCGTTCCTGACGATGCAGCAGAAGGCGGTCTCGTTCCTGATCGACACGATACACAAGGACATGAAAACGCTCAAGATCATTAGCGAGGGCATGACGCAGCTGGTGCAGAGCTAGGTGGAATGAAGGTGGTGGTGGTAGATTTGATTCAGGAACAGAAACCGCCAAACAAAATTCCTTATTGGTTCGATGTACGTTTATTGCGGAATAAAATTAATGCTAAATCGTAAAAAAAAAAAAAAAAAAAAAAAAAACTCCACGCGTCCGCGG]
[+] EMBL BM641189 [CCGGGCACCGGCGCCTTCGGAACGCTAGGATTCGGCGGGGCCACCGGTGGAACGACGACGGCATTCGGAGCGACCCCCGCCAGTTCGGCACCGACGTTCGGGTTCGGCACCAACACTGCTACAGCGGCAACACCCGCGTTCGGTGGTTTCGGTACGGCCACATCGACCGCTGGTACCGGATTCGGAGGATTTGGAGCCACCACTGCCACCAGCACGAGTGCTCCAGCGTTCGGTGGGTTCGGCGCGACCGCACAACCGTTCGGCAGTTCGATAGCGACCACCTCCGCCCCATCGTTCTTCGGTGGGCTTGGAGCGAGCCAGCCACAAGCAAGCACGGCCACCGGGTTCGGTGGCTTCGGCACTGGCAGCACGTTTGGTGCGTCGACTTTTGGCCAGCCGGCCGCCGGTGGATTAAACTTTGGACAGTCAGCGTTCGGGCAGCAGCAGCAGCAACAGCAGCAGCTGCAACAACAACAACAGCAGCTCGCTCAAGCCCTCTCGCCCGAGGAAGCGTTCGTGCAGTCCGTGTTCAATGTGTCCATCTTTGGCGACGAGCGGGACACGGTCATTTCGAAATGGAACTACCTGCAGGCGATGCTCGGTACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTCCAACTTTTCTGTGC ]
[+] EMBL BM577714 [ ccGCAACACCCGCGTTCGGTGGTTTCGGTACGGCCACATCGACCGCTGGTACCGGATTCGGAGGATTTGGAGCCACCACTGCCACCAGCACGAGTGCTCCAGCGTTCGGTGGGTTCGGCGCGACCGCACAACCGTTCGGCAGTTCGATAGCGACCACCTCCGCCCCATCGTTCTTCGGTGGGCTTGGAGCGAGCCAGCCACAAGCAAGCACGGCCACCGGGTTCGGTGGCTTCGGCACTGGCAGCACGTTTGGTGCGTCGACTTTTGGCCAGCCGGCCGCCGGTGGATTAAACTTTGGACAGTCAGCGTTCGGGCAGCAGCAGCAGCAACAGCAGCAGCTGCAACAACAACAACAGCAGCTCGCTCAAGCCCTCTCGCCCGAGGAAGCGTTCGTGCAGTCCGTGTTCAATGTGTCCATCTTTGGCGACGAGCGGGACACGGTCATTTCGAAATGGAACTACCTGCAGGCGATGCTCGGTACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTCCAAC TTTCTGTGCCGGTTCAAGACGATGGGCTACAGCAAGCTGCCCGGCCGGGACAACAAAACCGGCCTGGTGGGTTTGA ]
[+] EMBL BX614575 [ TTTCTAAATGGAACTACCTGCAGGCGATGCTCGGCACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTGCAAC TTCCTGTGCCGGTTCAAGACGATGGGCTACAGCAAG ]
[+] EMBL BM609244 [ AATGGAACTACCTGCAGGCGATGCTCGGCACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTCCAAC TTCCTGTGCCGGTTCAAGACGATGGGCTACAGCAAGCTGCCCGGCCGCGACAACAAAACCGGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAGTTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAGAACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCAACCATCTCGAACGAGGTGAAGCGCGTGCTGGCCACCGAGGTGGCCAGCTACCTCAATCAACCGATGCCAAAGCAGCAGCTTACCCAGCTCGGCATTGAG ]
[+] EMBL BM594186 [ ccgCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAGTTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAGAACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAAAAGTCAACCATCTCGAACGAGGTGAAGCGCGTGCTAGCCACCGAGGTGGCCAGCTACCTCAATCAACCGATGCCAAAGCAGCAGCTTACCCAGCTCGGCATTGAGTCGGTCGTTGCGTTGGTGCTGCCGGAGGAGGACCAGCTGAAGGAGTATCTGGACAATCCGCCCAAGGGTATCGATCCGCGCATGTGGGAACAGGCCAAGATGGATAATCCCGACCCGAAGAGATTCATACCGGTGCCGATGATTGGTTTTCAGGATCTCAAATGGCGCATCAAGTGTCAGGAGAACGAAACCGAAATCCATGCCTCGTACCTTGCGAAGGTGGAGAAAGAGATCGCCGAGCTGAAGCAGCGGCACATGAACACGACCGCCAAGATAGCGGAGCATCGGCGCAACTTTGCCGAGCTGAGCCACCGCATACTGCGCGTCATTGTG ]
[-] EMBL BM623022 [ CGGAGCATCGGCGCAACTTTGCCGAGCTGAGCCACCGCATACTGCGCGTCATTGTGAAGCAGGAAAGTACGCGCAAGCTTGGGCTGGCGCTGTCCCCGGAGGAGGAAGCGATACGGACGAAGCTGGAAAACATGCACGCGCTCGTGTCCACCCCGACCCAGTTCCGGGGCCGGCTGAGCGAGCTGCTGTCGCAGATGCGCATGCAGCGGAACCAGTGGGCACACGGCAACTTCCTGAACGAGTACACGCTGGATAAGGACGCCACGCAGGAGATGCAATCGTTCCTGACGATGCAGCAGAAGGCGGTCTCGTTCCTGATCGACACGATACACAAGGACATGAAAACGCTCAAGATCATTAGCGAGGGCATGACGCAGCTGGTGCAGAGCTAGGTGGAATGAAGGTGGTGGTGGTAGATTTGATTCAGGAACAGAAACCGCCA ]
[-] EMBL BM623061 [ CACACGGCAACTTCCTGAACGAGTACACGCTGGATAAGGACGCCACGCAGGAGATGCAATCGTTCCTGACGATGCAGCAGAAGGCGGTCTCGTTCCTGATCGACACGATACACAAGGACATGAAAACGCTCAAGATCATTAGCGAGGGCATGACGCAGCTGGTGCAGAGCTAGGTGGAATGAAGGTGGTGGTGGTAGATTTGATTCAGGAACAGAAACCGACAAACAAAATTCCTTATTGGTTCGATGTACGTTTATTGCGGAATAAAATTAATGCTAAATCGTAAAAAAAAAAAAAAAAAAAAAAAAAACTCCACGCGTCCGCGG]
consensusID : consensus_7798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[TGCCCCGAGGTTTANGATGGGCTACAGCAAGCTGCCCGGCCGCGACAACAAAACCGGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAGTTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAGAACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCAACCATCTCGAACGAGGTGAACGCGCGTTGCTGGCACCGAGGTGGCCAGCTACCTCAATCAACGATGCCAAAGCAGCCAGCTTAACCCAGCTACGGCCATTTGAGTCGGTACGTTTGCGTATGGTGCTGCCGGAGGAGGACCACTGAAGGAGTATCTGGACGAAACCGGCGAAGGGTATCGCATCCGCGCATTGTGGGAACCAGGCCCACGATTGGATTAATTCCCGACCGAAGCGATTCATACCTGGTGCCCAATGATTGGTNTN]
[+] EMBL AL697467 [TGCCCCGAGGTTTANGATGGGCTACAGCAAGCTGCCCGGCCGCGACAACAAAACCGGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAGTTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAGAACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCAACCATCTCGAACGAGGTGAACGCGCGTTGCTGGCACCGAGGTGGCCAGCTACCTCAATCAACGATGCCAAAGCAGCCAGCTTAACCCAGCTACGGCCATTTGAGTCGGTACGTTTGCGTATGGTGCTGCCGGAGGAGGACCACTGAAGGAGTATCTGGACGAAACCGGCGAAGGGTATCGCATCCGCGCATTGTGGGAACCAGGCCCACGATTGGATTAATTCCCGACCGAAGCGATTCATACCTGGTGCCCAATGATTGGTNTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7798#0 CCGGGCACCGGCGCCTTCGGAACGCTAGGATTCGGCGGGGCCACCGGTGGAACGACGACG 60
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 GCATTCGGAGCGACCCCCGCCAGTTCGGCACCGACGTTCGGGTTCGGCACCAACACTGCT 120
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 ACAGCGGCAACACCCGCGTTCGGTGGTTTCGGTACGGCCACATCGACCGCTGGTACCGGA 180
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 TTCGGAGGATTTGGAGCCACCACTGCCACCAGCACGAGTGCTCCAGCGTTCGGTGGGTTC 240
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 GGCGCGACCGCACAACCGTTCGGCAGTTCGATAGCGACCACCTCCGCCCCATCGTTCTTC 300
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 GGTGGGCTTGGAGCGAGCCAGCCACAAGCAAGCACGGCCACCGGGTTCGGTGGCTTCGGC 360
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 ACTGGCAGCACGTTTGGTGCGTCGACTTTTGGCCAGCCGGCCGCCGGTGGATTAAACTTT 420
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 GGACAGTCAGCGTTCGGGCAGCAGCAGCAGCAACAGCAGCAGCTGCAACAACAACAACAG 480
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 CAGCTCGCTCAAGCCCTCTCGCCCGAGGAAGCGTTCGTGCAGTCCGTGTTCAATGTGTCC 540
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 ATCTTTGGCGACGAGCGGGACACGGTCATTTCGAAATGGAACTACCTGCAGGCGATGCTC 600
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 GGTACGGGCAAATCGTTCTACTCGCACAATGCACCGCCGGTCGAGATTACGCCGTCCAAC 660
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 TTTCTGTGCCGGTTCAAGACGATGGGCTACAGCAAGCTGCCCGGCCGGGACAACAAAACC 720
consensus_7798#1 ----TGCCCCGAGGTTT-ANGATGGGCTACAGCAAGCTGCCCGGCCGCGACAACAAAACC 55
** *** * *************************** ************
consensus_7798#0 GGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAG 780
consensus_7798#1 GGCCTGGTGGGTTTGACCATCAACAAAACGGTGGCACAGATTAAAGAGCAGCAGCAACAG 115
************************************************************
consensus_7798#0 TTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAG 840
consensus_7798#1 TTCATTGCCAGCATGAACCAAATCTTTGGCAACAAACCGAACATTACGATCGTGGTGGAG 175
************************************************************
consensus_7798#0 AACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCA 900
consensus_7798#1 AACGTCAAGTCGATCAACGACACGAAGGTGCAGGTCATTATCTACATCGAGGAGAAGTCA 235
************************************************************
consensus_7798#0 ACCATCTCGAACGAGGTGAA-GCGCGTGCTGGCCACCGAGGTGGCCAGCTACCTCAATCA 959
consensus_7798#1 ACCATCTCGAACGAGGTGAACGCGCGTTGCTGGCACCGAGGTGGCCAGCTACCTCAATCA 295
******************** ****** * ***************************
consensus_7798#0 ACCGATGCCAAAGCAGC-AGCTTA-CCCAGCT-CGGCA--TTGAGTCGGT-CGTT-GCGT 1012
consensus_7798#1 AC-GATGCCAAAGCAGCCAGCTTAACCCAGCTACGGCCATTTGAGTCGGTACGTTTGCGT 354
** ************** ****** ******* **** ********** **** ****
consensus_7798#0 -TGGTGCTGCCGGAGGAGGACCAGCTGAAGGAGTATCTGGAC-AATCCGCCCAAGGGTAT 1070
consensus_7798#1 ATGGTGCTGCCGGAGGAGGACCA-CTGAAGGAGTATCTGGACGAAACCGGCGAAGGGTAT 413
********************** ****************** ** *** * ********
consensus_7798#0 CG-ATCCGCGCAT-GTGGGAACAGG--CCAAGATGGA--TAATCCCGACCCGAAGAGATT 1124
consensus_7798#1 CGCATCCGCGCATTGTGGGAACCAGGCCCACGATTGGATTAATTCCCGACCGAAGCGATT 473
** ********** ******** * *** *** * **** ** ****** ****
consensus_7798#0 CATACC-GGTGCC-GATGATTGGTTTTCAGGATCTCAAATGGCGCATCAAGTGTCAGGAG 1182
consensus_7798#1 CATACCTGGTGCCCAATGATTGGTNTN--------------------------------- 500
****** ****** ********* *
consensus_7798#0 AACGAAACCGAAATCCATGCCTCGTACCTTGCGAAGGTGGAGAAAGAGATCGCCGAGCTG 1242
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 AAGCAGCGGCACATGAACACGACCGCCAAGATAGCGGAGCATCGGCGCAACTTTGCCGAG 1302
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 CTGAGCCACCGCATACTGCGCGTCATTGTGAAGCAGGAAAGTACGCGCAAGCTTGGGCTG 1362
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 GCGCTGTCCCCGGAGGAGGAAGCGATACGGACGAAGCTGGAAAACATGCACGCGCTCGTG 1422
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 TCCACCCCGACCCAGTTCCGGGGCCGGCTGAGCGAGCTGCTGTCGCAGATGCGCATGCAG 1482
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 CGGAACCAGTGGGCACACGGCAACTTCCTGAACGAGTACACGCTGGATAAGGACGCCACG 1542
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 CAGGAGATGCAATCGTTCCTGACGATGCAGCAGAAGGCGGTCTCGTTCCTGATCGACACG 1602
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 ATACACAAGGACATGAAAACGCTCAAGATCATTAGCGAGGGCATGACGCAGCTGGTGCAG 1662
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 AGCTAGGTGGAATGAAGGTGGTGGTGGTAGATTTGATTCAGGAACAGAAACCGCCAAACA 1722
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 AAATTCCTTATTGGTTCGATGTACGTTTATTGCGGAATAAAATTAATGCTAAATCGTAAA 1782
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 AAAAAAAAAAAAAAAAAAAAAAACTCCACGCGTCCGCGG 1821
consensus_7798#1 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||