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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1225 fasta sequence
[GTGCATCAGGCGCTGGCCCCAACGGAAATGGTAGCCGAAGCCGCCGAGGAGGAAGATGGATGGGGAGTAGACGACGATTTGCACGATGGTGACCGATTTGAGGATGCGAAGGAAAACGACGAAGCTAAGACTGGCGAAGGAGGCGAGGGAGCCGGTTGGGATGTGGGCGATGATGATCTGGAGCTGCCCGAAGAATTGATATCGAAAATTTCAGCTTCAAATGCGGCCGGCACCAAGAACTTCTTTGCGGCACCACCAAAAGGACATCCCCCGTCTCATTTTTGGACCATCAATTCACAGCTGGCTGCCGATCATGTACGAGCGGGTTCCTACGATTCTGCTTGCCGTTTGCTGAACGATCAAGTCGGTGTAGTTAACTTTGCCCCGTACAAGGAACTTTTTATGGAATCATACGCAGCCTCGAAAACGTCGTACAGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGATCTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGACAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTCTCCAAATGGAAACAGTACGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACACACTTTGCATTACGATGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAACCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCTTCGTACCAGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAAGGTGGCCGAAGTGGGCAAAGATGTAATTGGTTTGCGCATTAGTGCATCACAGTTCAAGTAAGGTTAATGGTAATAGTAATGTATGC]
[+] EMBL BX628016 [GTGCATCAGGCGCTGGCCCCAACGGAAATGGTAGCCGAAGCCGCCGAGGAGGAAGATGGATGGGGAGTAGACGACGATTTGCACGATGGTGACCGATTTGAGGATGCGAAGGAAAACGACGAAGCTAAGACTGGCGAAGGAGGCGAGGGAGCCGGTTGGGATGTGGGCGATGATGATCTGGAGCTGCCCGAAGAATTGATATCGAAAATTTCAGCTTCAAATGCGGCCGGCACCAAGAACTTCTTTGCGGCACCACCAAAAGGACATCCCCCGTCTCATTTTTGGACCATCAATTCACAGCTGGCTGCCGATCATGTACGAGCGGGTTCCTACGATTCTGCTTGCCGTTTGCTGAACGATCAAGTCGGTGTAGTTAACTTTGCCCCGTACAAGGAACTTTTTATGGAATCATACGCAGCCTCGAAAACGTCGTACAGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGATCTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGGCAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTT ]
[+] EMBL BX608960 [ ATTCACAGCTGGCTGCCGATCATGTACGAGCGGGTTCCTACGATTCTGCTTGCCGTTTGCTGAACGATCAAGTCGGTGTAGTTAACTTTGCCCCGTACAAGGAACTTTTTATGGAATCATACGCAGCCTCGAAAACGTCGTACAGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGATCTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGACAGGAAATAGCTGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTCTCCAAATGGAAACAGTACGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGC ]
[+] EMBL BX610432 [ ATTCACAGCTGGCTGCCGATCATGTACGAGCGGGTTCCTACGATTCTGCTTGCCGTTTGCTGAACGATCAAGTCGGTGTAGTTAACTTTGCCCCGTACAAGGAACTTTTTATGGAATCATACGCAGCCTCGAAAACGTCGTACAGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGATCTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGACAGGAAATAGCTGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTCTCCAAATGGAAACAGTACGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTA ]
[+] EMBL BX629000 [ AGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGATCTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGGCAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTCTCCAAATGGAAACAGTGCGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACACACTTTGCATTACGATGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAACCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCTTCGTACCAGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAANGTGGCCGAAGTGGGCAAAGATGTAATTGGTTTGCGCA ]
[+] EMBL BM603582 [ ccgCAACTAACAACTACCGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGACAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTAGGTCTCCAAATGGAAACAGTGCGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCATGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTGGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACATACTTTGCATTACGATGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAACCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCTTCGTACCAGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAAGGTGGCCGAAGTGGGCAAAGATGTAATTGGTTTGCGCATTAGTGCATCACAGTTCA ]
[+] EMBL BX614474 [ CCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCATATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACACACTTTGCATTACGATGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAACCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCTTCGTACCAGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAAGGTGGCCGAAGTGGGCAAAGATGTAATTGGTTTGCGCATTAGTGCATCACAGTTCAAGTAAGGTTAATGGTAATAGTAATGTATGC]
consensusID : consensus_7800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[GGCAGAATCGCCACGAGTGGTACTGGCCGCATACTTTACTCACCGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACACACTTTGCATTACGATGGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAAGCCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCGTTCGTACCAGGGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAAAGNTGGCCGAANTGGGCAAAGATGTANATTGGGNNTTGCGCATTAGTGGCATCACAGGNGTCAAAGTAAGGTGAATAGGTAATAGT]
[+] EMBL BX468035 [GGCAGAATCGCCACGAGTGGTACTGGCCGCATACTTTACTCACCGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTTGCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATATTGCAAGCATGCGAAATGAATGAATCAGACGAACACACTTTGCATTACGATGGAGCATAATCCGTTCACATTGTGTGCCGTTACTTACAAAGCCCATCTATCGCGGTAAACCGGAGGAAAAGTGTTCTCTATGTTCTGCGTTCGTACCAGGGCCCCCGTATAAGGGTGTCACGTGCGTCGTCTGCAAAGNTGGCCGAANTGGGCAAAGATGTANATTGGGNNTTGCGCATTAGTGGCATCACAGGNGTCAAAGTAAGGTGAATAGGTAATAGT]
consensusID : consensus_7800#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence
[TTGGCGTCCAGGCAGACTCGGTTTTAAGGCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCGACCCCACGCTTGGCCTACAACGTTGAATGATCTTGTGCAAACATTTGCAAGACATGCTACCAACTAACAACTACCGGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGGCAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTACTCCAAATGGAAACAGTGCGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCGACTAAGATCTGGTTNTTTCAAGGCTGAAAGGAACTACAAGAAGCAGCGGCTTCCTTTA]
[+] EMBL BX469055 [TTGGCGTCCAGGCAGACTCGGTTTTAAGGCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCGACCCCACGCTTGGCCTACAACGTTGAATGATCTTGTGCAAACATTTGCAAGACATGCTACCAACTAACAACTACCGGGCAAATTCGTTGAAGCAATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGGCAGGAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTACTCCAAATGGAAACAGTGCGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATACTTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCGACTAAGATCTGGTTNTTTCAAGGCTGAAAGGAACTACAAGAAGCAGCGGCTTCCTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7800#0 GTGCATCAGGCGCTGGCCCCAACGGAAATGGTAGCCGAAGCCGCCGAGGAGGAAGATGGA 60
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 TGGGGAGTAGACGACGATTTGCACGATGGTGACCGATTTGAGGATGCGAAGGAAAACGAC 120
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 GAAGCTAAGACTGGCGAAGGAGGCGAGGGAGCCGGTTGGGATGTGGGCGATGATGATCTG 180
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 GAGCTGCCCGAAGAATTGATATCGAAAATTTCAGCTTCAAATGCGGCCGGCACCAAGAAC 240
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 TTCTTTGCGGCACCACCAAAAGGACATCCCCCGTCTCATTTTTGGACCATCAATTCACAG 300
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 CTGGCTGCCGATCATGTACGAGCGGGTTCCTACGATTCTGCTTGCCGTTTGCTGAACGAT 360
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 CAAGTCGGTGTAGTTAACTTTGCCCCGTACAAGGAACTTTTTATGGAATCATACGCAGCC 420
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 TCGAAAACGTCGTACAGCAGTTTGCCACACGTCAGTTCGCTGTCTGCCCATCCTAACCGA 480
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 AATTGGAAGGAACTGAATCCCAAGAACGGTCACCCCACGCTTGCCTACAAGTTGAATGAT 540
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 CTTGTGCAAAATTTGCAAACATGCTACCAACTAACAACTACCGGCAAATTCGTTGAAGCA 600
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 ATCGATAAACTGCAAAATATCATCCTCTGCATTCCGCTGCTAGTCGTGGAAACGCGACAG 660
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 GAAATAGCCGAAGCGCAACAGTTGCTCACCATTTGCCGAGAATACGTGGTGGGTCTCCAA 720
consensus_7800#1 ------------------------------------------------------------
consensus_7800#2 ------------------------------------------------------------
consensus_7800#0 ATGGAAACAGTACGGAAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGT-ATATG 779
consensus_7800#1 -------------------------------------------GGCAGAATCGCCACGAG 17
consensus_7800#2 -----------------------------------------TTGGCGTCCAGGC-AGACT 18
** * *
consensus_7800#0 TGA-ACTGGCCGCATACTTTACTCAC-GTGAACTTGCAACCCGTTCATCAGATACTTACC 837
consensus_7800#1 TGGTACTGGCCGCATACTTTACTCACCGTGAACTTGCAACCCGTTCATCAGATACTTACC 77
consensus_7800#2 CGGTTTTAAGGCGAAATTGGAAGGAACTGAATCCCAAGAACGGTCGACCCCACGCTTGGC 78
* * * * * * * * * * * ** * * * *** *
consensus_7800#0 CTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTT 897
consensus_7800#1 CTGCGAACAGCACTAAATCTGTTTTTCAAGCTAAAGAACTACAAAACAGCGGCTTCCTTT 137
consensus_7800#2 CT----ACAACGTTGAATGATCTTGTG----CAAACATTTGCAAGACAT--GCTACCAAC 128
** *** * * *** ** * *** * * *** *** *** **
consensus_7800#0 GCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATA 957
consensus_7800#1 GCCCGTCGTTTGCTCGAGCTCGGTCCACGTCCTGAGGTAGCTCAGCAGGCACGCAAAATA 197
consensus_7800#2 TAACAACTACCGGGCAAATTCG---------TTGAAGCAA-TCGATAAAC-TGCAAAATA 177
* * * * * *** *** * * ** * * ********
consensus_7800#0 TTGCAAGCATGCGAAATGA-ATGAATCAGACGAACACACTTTGCATTACGATG-AGCATA 1015
consensus_7800#1 TTGCAAGCATGCGAAATGA-ATGAATCAGACGAACACACTTTGCATTACGATGGAGCATA 256
consensus_7800#2 TCATCCTC-TGCATTCCGCTGCTAGTCGTGGAAACGCGGCAGGAAATA-GCCGAAGCGCA 235
* * *** * * ** *** * * * ** * * *** *
consensus_7800#0 ATCCGTTCACATTGTGTGCCGTTACTTACAAA-CCCATCTATCGCG-GTAAACCGGAGGA 1073
consensus_7800#1 ATCCGTTCACATTGTGTGCCGTTACTTACAAAGCCCATCTATCGCG-GTAAACCGGAGGA 315
consensus_7800#2 ACAGTTGCTCACCATTTGCCGAGAAT-ACGTGGTGGGTACTCCAAATGGAAACAGTGCGG 294
* * * ** * ***** * * ** * * * **** * *
consensus_7800#0 AAAGTGTTCTCTATGTTCTGC-TT--CGTACCAG--CCCCCGTATAAGGGTGTCACGTGC 1128
consensus_7800#1 AAAGTGTTCTCTATGTTCTGCGTT--CGTACCAGGGCCCCCGTATAAGGGTGTCACGTGC 373
consensus_7800#2 AAAACGCTACCGAAGAACACACTCGACGAGCAAAAGCGTATATGTGAACTGGCCGCATAC 354
*** * * * * * * * ** * * * * * * * * * * *
consensus_7800#0 GTCGTCTGCA-A-GGTGGC--CGAAGTGGGCAAAGATGTAATT---GGTTTGCGCATTAG 1181
consensus_7800#1 GTCGTCTGCA-AAGNTGGC--CGAANTGGGCAAAGATGTANATTGGGNNTTGCGCATTAG 430
consensus_7800#2 TTTACTCACGTGAACTTGCAACCCGTTCATCAGATACTTACCCTGCGAACAGCGACTAAG 414
* * * ** * * ** * * ** * *** * **
consensus_7800#0 ---TG--CATCACAG---TTCAAGTAAGGTTAAT-GGTAATAGTAATGTATGC 1225
consensus_7800#1 ---TGG-CATCACAGGNGTCAAAGTAAGGTGAATAGGTAATAGT--------- 470
consensus_7800#2 ATCTGGTTNTTTCAAGGCTGAAAGGAACTACAAGAAGCAGCGGCTTCCTTTA- 466
** * ** * *** ** ** * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||