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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1030 fasta sequence
[CCGCTCGGCCCGCACGGTCATAAGCTCGCGTGTGGTTTACGGGCTTCCGGGAGGGGCATTTGGACGGGTGGCGTGTGTTGTACAAAGGGTACAGGGTACGGAATCTGGCTCTCGGCGTGGTACAG-ATACGGGCCATTCGG-TGTGAAAATTCTGCCAAAGTGTTGGAAAATCGTTGCGTAGCTGTAGACGCGCAGTGTGCAATAGCAGTGAGCTGCGCGTGTGTGTGTGTGAATCGTCCGAATCCGATGCAATGATCGTGTAACAGCACTTGACGACGCCGCATTCTAACGGCGATCATACACTGAACATCCCGACATTCATTCTAATTCACACACCACCCATACTAGACTTGCTCTGCACCCTTCTTCCCGCTGGAGTTGCCACAAACACAAACAACAGTGGTGAGGCGCTGATCCCGCAGGGAAAATTCATTTGTAGTGACGAAATTAGGGAGTACGAAAAGCAGCGTGGTACACGAACGCCGCAGACAGCACCGAAACACAACGCAACCACACAGCAATGGCCAAATTCAGTGGGAAAAAATGCCGCCTGCTGACGGTGATGACGCTGACGGTGTTTTTCTTCTTCGTCGAAATCGTCGTCGGCTATCTGACCAACTCGATGGCCCTGGTGGCCGACAGTTTTCACATGCTCGGTGACATAGCGGCGCTAGTGATTTCCTTCCTGTCGATTAAGATGTCGCCAAAGAAATGGTCCAAAAACACGTTCGGTTGGGCGCGGGCGGAAGTGCTCGGTGCGCTGGTGAACGCAGTATTTCTAGTGGCCCTTTGCTTCAGTATTACCATCGAGGCGTGCAAACGATTCATCGAGGTGGAGCACATCCACGAGCCGGAGCTGCTAATTGCGGTCGGTGTGATCGGCCTGTTGGTGAATCTGCTCGGCCTTTGCCTATTGCACAAGCACGGTGGAGGAGGCCACATTGGACATTCGCACGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCATGGCAACCTGGGCAACACGGACGACAAAAAAA]
[+] EMBL BM593459 [CCGCTCGGCCCGCACGGTCATAAGCTCGCGTGTGGTTTACGGGCTTCCGGGAGGGGCATTTGGACGGGTGGCGTGTGTTGTACAAAGGGTACAGGGTACGGAATCTGGCTCTCGGCGTGGTACAG ATACGGGCCATTCGG TGTGAAAATTCTGCCAAAGTGTTGGAAAATCGTTGCGTAGCTGTAGACGCGCAGTGTGCAATAGCAGTGAGCTGCGCGTGTGTGTGTGTGAATCGTCCGAATCCGATGCAATGATCGTGTAACAGCACTTGACGACGCCGCATTCTAACGGCGATCATACACTGAACATCCCGACATTCATTCTAATTCACACACCACCCATACTAGACTTGCTCTGCACCCTTCTTCCCGCTGGAGTTGCCACAAACACAAACAACAGTGGTGAGGCGCTGATCCCGCAGGGAAAATTCATTTGTAGTGACGAAATTAGGGAGTACGAAAAGCAGCGTGGTACACGAACGCCGCAGACAGCACCGAAACACAACGCAACCACACAGCAATGGCCAAATTCAGTGGGAAAAAATGCCGCCTGCTGACGGTGATGACGCTGACGGTGTTTTTCTTCTTCGTCGAAATCGTCGTCGGCTATCTGACCAACTCGATGGCCCTGGTGGCCGACAGTTTTCACATGCTCGGTGA ]
[+] EMBL BM586976 [ ccGCTCGCGTGTGGTTTACGGGCTTCCGGGAGGGGCATTTGGACGGGTGGCGTGTGTTGTACAAAGGGTACAGGGTACGGAATCTGGCTCTCGGCGTGGTACAG ATACGGGCCATTCGG TGTGAAAATTCTGCCAAAGTGTTGGAAAATCGTTGCGTAGCTGTAGACGCGCAGTGTGCAATAGCAGTGAGCTGCGCGTGTGTGTGTGTGAATCGTCCGAATCCGATGCAATGATCGTGTAACAGCACTTGACGACGCCGCATTCTAACGGCGATCATACACTGAACATCCCGACATTCATTCTAATTCACACACCACCCATACTAGACTTGCTCTGCACCCTTCTTCCCGCTGGAGTTGCCACAAACACAAACAACAGTGGTGAGGCGCTGATCCCGCAGGGAAAATTCATTTGTAGTGACGAAATTAGGGAGTACGAAAAGCAGCGTGGTACACGAACGCCGCAGACAGCACCGAAACACAACGCAACCACACAGCAATGGCCAA ]
[+] EMBL AGA282866 [ CAGTATACGGGCCATTCGGTTGTGAAAATTCTGCCAAAGTGTTGGAAAATCGTTGCGTAGCTGTAGACGCGCAGTGTGCAATAGCAGTGAGCTGCGCGTGTGTGTGTGTGAATCGTCCGAATCCGATGCAATGATCGTGTAACAGCACTTGACGACGCCGCATTCTAACGGCGATCATACACTGAACATCCCGACATTCATTCTAATTCACACACCACCCATACTAGACTTGCTCTGCACCCTTCTTCCCGCTGGAGTTGCCACAAACACAAACAACAGTGGTGAGGCGCTG ]
[-] EMBL AGA281244 [ ACAACAGTGGTGAGGCGCTGATCCCGCAGGGAAAATTCATTTGTAGTGACGAAATTAGGGAGTACGAAAAGCAGCGTGGTACACGAACGCCGCAGACAGCACCGAAACACAACGCAACCACACAGCAATGGCCAAATTCAGTGGGAAAAAATGCCGCCTGCTGACGGTGATGACGCTGACGGTGTTTTTKTTKTTCGTCGAAATCGTCGTCGGCTATCTGACCAACTCGATGGCCCTGGTGGCCGACAGTTTTCACATGCTCGGTGACATAGCGGCGCTAGTGATTTCCTTCCTGTCGATTAAGATGTCGCCAAAGAAATGGTCCAAAAACACGTTCGGTTGGGCGCGGGCGGAAGTGCTCGGTGCGCTGGTGAACGCAGTATTTCTAGTGGCCCTTTGCTTCAGTATTACCATCGAGGCGTGCAAACGATTCATCGAGGTGGAGCACATCCACGAGCCGGAGCTGCTAATTGCGGTCGGTGTGATCGGCCTGTTGGTGAATCTGCTCGGCCTTTGCCTATTGCACAAGCACGGTGGAGGAGGCCACATTGGACATTCGCACGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCATGGCAACCTGGGCAACACGGACGACAAAAAAA]
[+] EMBL BM618617 [ ccgGCCGCCTGCTGACGGTGATGACGCTGACGGTGTTTTTCTTCTTCGTCGAAATCGTCGTCGGCTATCTGACCAACTCGATGGCCCTGGTGGCCGACAGTTTTCACATGCTCGGTGACATAGCGGCGCTAGTGATTTCCTTCCTGTCGATTAAGATGTCGCCAAAGAAATGGTCCAAAAACACGTTCGGTTGGGCGCGGGCGGAAGTGCTCGGTGCGCTG ]
consensusID : consensus_7854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[CCGCCCACGCGTCCGATCATAAGTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGTCGGTGCTGCTGGTGGCGCTCATCCTCAACTCGGTGTGGCCGCTGCTGCGCGAATCGGCCCTCATTCTGCTGCAGACCGTGCCGACCCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAGATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGGCATCCACTCGACCACGATCCAGCCGGAGTTTGTCGAGATCGAAGCGCTGAACAGCTATTCGGGTTCGGACGGATTTTCGAACAGCTTGAATGGCAGTGCGACACAGGACTGCTGTGCCCTCGACTGTCCGACGACGGACGAGAGTAGTTGTATCAAAGCTACATGCTGCCAAAACAACAATAACATTAAGCCGGTGGTGGTAATCGATAAGGGTGCGGCTGGCGGCACCAAGGAACCGTCCGGCAGTAGTAGCGCCTACGAAGGCGACCAGCCGGCAGGGTTGA]
[+] EMBL BM588060 [CCGCCCACGCGTCCGATCATAAGTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGTCGGTGCTGCTGGTGGCGCTCATCCTCAACTCGGTGTGGCCGCTGCTGCGCGAATCGGCCCTCATTCTGCTGCAGACCGTGCCGACCCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAGATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGGCATCCACTCGACCACGATCCAGCCGGAGTTTGTCGAGATCGAAGCGCTGAACAGCTATTCGGGTTCGGACGGATTTTCGAACAGCTTGAATGGCAGTGCGACACAGGACTGCTGTGCCCTCGACTGTCCGACGACGGACGAGAGTAGTTGTATCAAAGCTACATGCTGCCAAAACAACAATAACATTAAGCCGGTGGTGGTAATCGATAAGGGTGCGGCTGGCGGCACCAAGGAACCGTCCGGCAGTAGTAGCGCCTACGAAGGCGACCAGCCGGCAGGGTTGA]
consensusID : consensus_7854#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[CCGCCCACGCGTCCGATTGGACATTCGCACGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCATGGCAACCTGGGCAACACGGACGACAATGAAAACAAATCATTCATGTATCAGCAGAACGGTACGGCGGCGAAAAAGACTACCCACCACGGACACTCGCACGACTCCTCGCAGATGAACATGCGGGGAGCGTTCCTGCACGTGCTCAGCGATGCGCTCGGCAGCGTGGTGGTAATCATAAGTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGTCGGTGCTGCTGGTGGCGCTCATCCTCAACTCGGTGTGGCCGCTGCTGCGCGAATCGGCCCTCATTCTGCTGCAGACCGTGCCGACCCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAAGATCGCCGAGCGGGTGAAGGAGT]
[+] EMBL BM622975 [CCGCCCACGCGTCCGATTGGACATTCGCACGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCATGGCAACCTGGGCAACACGGACGACAATGAAAACAAATCATTCATGTATCAGCAGAACGGTACGGCGGCGAAAAAGACTACCCACCACGGACACTCGCACGACTCCTCGCAGATGAACATGCGGGGAGCGTTCCTGCACGTGCTCAGCGATGCGCTCGGCAGCGTGGTGGTAATCATAAGTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGTCGGTGCTGCTGGTGGCGCTCATCCTCAACTCGGTGTGGCCGCTGCTGCGCGAATCGGCCCTCATTCTGCTGCAGACCGTGCCGACCCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAAGATCGCCGAGCGGGTGAAGGAGT]
consensusID : consensus_7854#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence
[TCCCCCCGAGGTTAATGTGGCGCTGCTGCGCGAATCGGCCTCATTCTGCTGCAGACGTGCCGACCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAGATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGGCATCCACTCGACCACGATCCA]
[+] EMBL AL934902 [TCCCCCCGAGGTTAATGTGGCGCTGCTGCGCGAATCGGCCTCATTCTGCTGCAGACGTGCCGACCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAGATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGGCATCCACTCGACCACGATCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7854#1 ------------------------------------------------------------
consensus_7854#3 ------------------------------------------------------------
consensus_7854#2 ------------------------------------------------------------
consensus_7854#0 CCGCTCGGCCCGCACGGTCATAAGCTCGCGTGTGGTTTACGGGCTTCCGGGAGGGGCATT 60
consensus_7854#1 ------------------------------------------------------------
consensus_7854#3 ------------------------------------------------------------
consensus_7854#2 ---------------------------------------------CCGCCCACGCGTCCG 15
consensus_7854#0 TGGACGGGTGGCGTGTGTTGTACAAAGGGTACAGGGTACGGAATCTGGCTCTCGGCGTGG 120
consensus_7854#1 ------------------------------------------------------------
consensus_7854#3 ------------------------------------------------------------
consensus_7854#2 ATTGGACATTCGCACGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCAT 75
consensus_7854#0 TACAGATACGGGCCATTCGGTGTGAAAATTCTGCCAAAGTGTTGGAAAATCGTTGCGTAG 180
consensus_7854#1 ------------------------------------------------------------
consensus_7854#3 ------------------------------------------------------------
consensus_7854#2 GGCAACCTGGGCAACACGGACGACAATGAAAACAAATCATTCATGTATCAGCAGAACGGT 135
consensus_7854#0 CTGTAGACGCGCAGTGTGCAATAGCA-GTGAGCTGCGCGTGTGTGTGTGTGAATCGTCCG 239
consensus_7854#1 ------------------------------------------------------------
consensus_7854#3 ------------------------------------------------------------
consensus_7854#2 ACGGCGGCGAAAAAGACTACCCACCACGGACACTCGCACGACTCCTCGCAGATGAACATG 195
consensus_7854#0 AATCCGATGCAATGATCGTGTAACAGCACTTGACGACGCCGCATTCTAACGGCGATCATA 299
consensus_7854#1 ------------------------------------CCGCCCACGCGTCCG--ATCATAA 22
consensus_7854#3 ------------------------------------------------------------
consensus_7854#2 CGGGGAGCGTTCCTGCA--CGTGCTCAGCGATGCGCTCGGCAGCGTGGTGGTAATCATAA 253
consensus_7854#0 CACTGAACATCCCGACATTCATTCTAATTCACACACCACCCATACTAGACTTGCTCTGCA 359
consensus_7854#1 GTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGT 82
consensus_7854#3 ------------------------------------------------------------
consensus_7854#2 GTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGT 313
consensus_7854#0 CCCTTCTTCCCGCTGGAGTTGCCACAAACACAAACAACAGTGGTGAGGCGCTGATCCCGC 419
consensus_7854#1 CGGTG----CTGCTGGTGGCGCTCATCCT--CAACTCGGTGTGGCCGC-TGCTGCGCGAA 135
consensus_7854#3 ----------------------TCCCCCC--GAGGTTAATGTGGC-GC-TGCTGCGCGAA 34
consensus_7854#2 CGGTG----CTGCTGGTGGCGCTCATCCT--CAACTCGGTGTGGCCGC-TGCTGCGCGAA 366
consensus_7854#0 AGGGAAAATTCATTTGTAGTGACGAAATTAGGGAGTACGAAAAGCAGCGTGGTACACGAA 479
* ** ** ** * * ****
consensus_7854#1 T-CGGCCCTCATT-CTGCTGCAGACCGTGCCGACCCACATACAGG-----TCGATGCGAT 188
consensus_7854#3 T-CGGCC-TCATT-CTGCTGCAGAC-GTGCCGACC-ACATACAGG-----TCGATGCGAT 84
consensus_7854#2 T-CGGCCCTCATT-CTGCTGCAGACCGTGCCGACCCACATACAGG-----TCGATGCGAT 419
consensus_7854#0 CGCCGCAGACAGCACCGAAACACAACGCAACCACACAGCAATGGCCAAATTCAGTGGGAA 539
* ** ** * * ** * * * ** * * * ** ** **
consensus_7854#1 CCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTG 248
consensus_7854#3 CCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTG 144
consensus_7854#2 CCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTG 479
consensus_7854#0 AAAATGCCGCCTGCTGACGGTGATGA------CGCTGACGGTGTTTTTCTTCTTCGTCGA 593
* *********** * * ** **** ***** *** ***
consensus_7854#1 GCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACAT---CCGCTGCCGCAACCTGTC 305
consensus_7854#3 GCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACAT---CCGCTGCCGCAACCTGTC 201
consensus_7854#2 GCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACAT---CCGCTGCCGCAACCTGTC 536
consensus_7854#0 AATCGTCGTCGGCTATCTGACCAACTCGATGGCCCTGGTGGCCGACAGTTTTCACATGCT 653
*** **** * * * ** * ** ***** * * * * ** **
consensus_7854#1 CGAGTACATG--------AA-GATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGG 356
consensus_7854#3 CGAGTACATG--------AA-GATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGG 252
consensus_7854#2 CGAGTACATG--------AAAGATCGCCGAGCGGGTGAAGGAGT---------------- 572
consensus_7854#0 CGGTGACATAGCGGCGCTAGTGATTTCCTTCCTGTCGATTAAGATGTCGCCAAAGAAATG 713
** **** * *** ** * * ** **
consensus_7854#1 CATCCACTCGACCACGATCCAGCCGGAGTTTGTCGAGATCGAAGCGCTGAACAGCTATTC 416
consensus_7854#3 CATCCACTCGACCACGATCCA--------------------------------------- 273
consensus_7854#2 ------------------------------------------------------------
consensus_7854#0 GTCCAAAAACACGTTCGGTTGGGCGCGGGCGGAAGTGCTCGGTGCGCTGGTGAACGCAGT 773
consensus_7854#1 GGGTTCGGACGGATTTTCGAACAGCTTGAATGGCAGTGCGACACAGGACTGCTGTGCCCT 476
consensus_7854#3 ------------------------------------------------------------
consensus_7854#2 ------------------------------------------------------------
consensus_7854#0 ATTTCTAGTGGCCCTTTGCTTCAGTATTACCATCGAGGCGTGCAAACGATTCATCGAGGT 833
consensus_7854#1 CGACTGTCCGACGACGGACGAGAGTAGTTGTATCAAAGCTACATGCTGCCAAAACAACAA 536
consensus_7854#3 ------------------------------------------------------------
consensus_7854#2 ------------------------------------------------------------
consensus_7854#0 GGAGCACATCCACGAGCCGGAGCTGCTAATTGCGGTCGGTGTGATCGGCCTGTTGGTGAA 893
consensus_7854#1 TAACATTAAGCCGGTGGTGGTAATCGATAAGGGTGCGGCTGGCGGCACCAAGGAACCGTC 596
consensus_7854#3 ------------------------------------------------------------
consensus_7854#2 ------------------------------------------------------------
consensus_7854#0 TCTGCTCGGCCTTTGCCTATTGCACAAGCACGGTGGAGGAGGCCACATTGGACATTCGCA 953
consensus_7854#1 CGGCAGTAGTAGCGCCTACGAAGGCGACCAGCCGGCAGGGTTGA---------------- 640
consensus_7854#3 ------------------------------------------------------------
consensus_7854#2 ------------------------------------------------------------
consensus_7854#0 CGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCATGGCAACCTGGGCAA 1013
consensus_7854#1 -----------------
consensus_7854#3 -----------------
consensus_7854#2 -----------------
consensus_7854#0 CACGGACGACAAAAAAA 1030
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||