These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1089 fasta sequence [GGAAAATGGCCCGATGGTCGTCAACCTGCCAATGGATTACATTATGCCCGCCGTGACCGAGCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGACAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTGGAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTTCAAGGGCCTGGTGCCGGCGGGCTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTGGGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACCGTCGTCGGCGTTCCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTACTCGTACGGCTTCAACATTGCGTCCGCGTTCCTGACTTGTGCGATGGGTTTTAAAGTTTTAATTTTGCGCCACAATGGTTATTGAAGGTGGTAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGATGCCATCAAGCTTTTCATACCAGTATGTTCTTTATTGCGACTGTTGCATGATTGAATTTCGTGTCATGCAAAACTGTAAAATAATATTAAAGATCTGGCAACGAGTTCTACTGAACGTCTGATGTACCATTTCAGTAAAGTCGATACCTGAGTCCGAGCTTGGTATTTCATTTCATTTTTTTCCAAATTTATTCCAAAAACCTAAAGACTACACAGCGCTTTCGAATGAATCGAAATCTAAATTTCCTGGAATAAAGCAATTGCTCTGCAGCTTACCAGT] [+] EMBL CNS08RB0 [GGAAAATGGCCCGATGGTCGTCAACCTGCCAATGGATTACATTATGCCCGCCGTGACCGAGCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGACAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTGGAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTTCAAGGGCCTGGTGCCGGCGGGCTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTGGGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACCGTCGTCGGCGTTCCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTACTCGTACGGCTTCAACATTGCGTCCGCGTTCCTGACTTGTGCGATGGGTTTTAAAGTTTTAATTTTGCGCCACAATGGTTATTGAAGGTGGTAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGATGCCATCAAGCTTTTCATACCAGTATGTTCTTTATTGCGACTGTTGCATGATTGAATTTCGTGTCATGCAAAACTGTAAAATAATATTAAAGATCTGGCAACGAGTTCTACTGAACGTCTGATGTACCATTTCAGTAAAG ] [-] EMBL CNS08RB1 [ TCCGCGTTCCTGACTTGTGCGATGGGTTTTAACGTTTTAATTTTGCGCCACAATGGTTATTGAAGGTGGTAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGGGCAGCTTCCATTAAGATGCCATCAAGCTTTTCATACCAGTATGTTCTTTATTGCGACTGTTGCATGATTGAATTTCGTGTCATGCAAAACTGTAAAATAATATTAAAGGTCTGGCAACGAGTTCTACTGAACGTCTGATGTACCATTTCAGTAAAGTCGATACCTGAGTCCGAGCTTGGTATTTCATTTCATTTTTTTCCAAATTTATTCCAAAAACCTAAAGACTACACAGCGCTTTCGAATGAATCGAAATCTAAATTTCCTGGAATAAAGCAATTGCTCTGCAGCTTACCAGT] consensusID : consensus_7855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1063 fasta sequence [CCCACGCGTCCGCATTATGCTCGCCGTGACCGAGCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGACAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTGGAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTTCAAGGGCCTGGTGCCGGCGGACTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTGGGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACC-GTCGTCGGCGTTTCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTACTCGTACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCACGAACCGATGGAGATATCATTCACCGAAAACATCTTCACCGAGGAGGAATCGGTGGCCGATGCGTGGAAGCGGGGCGGCGAACCACTCGACCGGGAGCTGGCGGCGATGGTGTACGAGATGTACCGGCTCCACTCCCAGTACGGGCTCGATCCGGTGTGATCGGGTTTCTCCTGGGTGGAGCGTGCGGATCGATGGAAGTGCTGAACAGGCTCACCACAGCAACACGTGCGCGCACCATTGACTTGTGCGATGGGTTTTAACGTTTTAATTTTGCGCCACAATGGTTATTGAAGGGAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGTTAAAAAAAAGCTTTTCATTCCAGTAAAAAAAA] [+] EMBL BM650722 [CCCACGCGTCCGCATTATGCTCGCCGTGACCGAGCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGACAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTGGAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTTCAAGGGCCTGGTGCCGGCGGACTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTGGGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGCGCGCTGGTACAGACGGTGGCCACCGGTCGTCGGCGTTTCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTACTCGTACGGCTTCAACAT ] [+] EMBL BM634752 [ ccgttccaCTC CAGTGACCGAGCTGGGGCGCTTTCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGACAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTGGAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTTCAAGGGCCTGGTGCCGGCGGACTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTGGGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACC GTCGTCGGCGTTTCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTACTCGTACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCACGAACCGATGGAGATATCATTCACCGAAAACATCTTCA ] [+] EMBL AGA285100 [ GCCGTCATTTGCCATGGCGACTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCACTCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGCTGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTTCCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACC GTCGTCGGCGTTCCCGAGCCCGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCGGAATACTACTCGTACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCACGAACCGATGGAGATATCATTCACCGAAAACATCTTCAC ] [-] EMBL AGA283931 [ TACTCGTACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCATGAACCGATGGAGATATCATTCACCGAAAACATCTTCACCGAGGAGGAATCGGTGGCCGATGCGTGGAAGCGGGGCGGCGAACCACTCGACCGGGAGCTGGCGGCGATGGTGTACGAGATGTACCGGCTCCACTCCCAGTACGGGCTCGATCCGGTGTGATCGGGTTTCTCCTGGGTGGAGCGTGCGGATCGATGGAAGTGCTGAACAGGCTCACCACAGCAACACGTGCGCGCACCATTGACTTGTGCGATGGGTTTTAACGTTTTAATTTTGCGCCACAATGGTTATTGAAGGGAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGTTAAAAAAAA ] [-] EMBL AGA283809 [ ACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCACGAACCGATGGAGATATCATTCACCGAAAACATCTTCACCGAGGAGGAATCGGTGGCCGATGCGTGGAAGCGGGGCGGCGAACCACTCGACCGGGAGCTGGCGGCGATGGTGTACGAGATGTACCGGCTCCACTCCCAGTACGGGCTCGATCCGGTGTGATCGGGTTTCTCCTGGGTGGAGCGTGCGGATCGATGGAAGTGCTGAACAGGCTCACCACAGCAACACGTGCGCGCACCATTGACTTGTGCGATGGGTTTTAACGTTTTAATTTTGCGCCACAATGGTTATTGAAGGGAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGATACCATCAAGCTTTTCATTCCAGTAAAAAAAA] [+] EMBL BM588526 [ ccgGGGCTCGATCCGGTGTGATCGGGTTTCTCCTGGGTGGAGCGTGCGGATCGATGGAAGTGCTGAACAGGCTCACCACAGCAACACGTGCGCGCACCATTGACTTGTGCGATGGGTTTTAACGTTTTAATTTTGCGCCACAATGGTTATTGAAGGGAATGGGGTATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7855#0 GGAAAATGGCCCGATGGTCGTCAACCTGCCAATGGATTACATTATGCCCGCCGTGACCGA 60 consensus_7855#1 ---------------------------CCCACGCGTCCGCATTATGCTCGCCGTGACCGA 33 *** * ******** ************ consensus_7855#0 GCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGA 120 consensus_7855#1 GCTGGGGCGCTTCCATGGCGAATGTTACGGCTTGAAGGTGGCGCACCGCCCCCAGTTCGA 93 ************************************************************ consensus_7855#0 CAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTG 180 consensus_7855#1 CAGCATGATTGCAAAGTTTAAGGAATCTCGCTACGCCGCCGACATTACGGACCACACGTG 153 ************************************************************ consensus_7855#0 GAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTT 240 consensus_7855#1 GAAAGCGGTCATGACCGTTGCACCGATGCGTGCCATCAAAGCCCTGAAGGAGAGCCGGTT 213 ************************************************************ consensus_7855#0 CAAGGGCCTGGTGCCGGCGGGCTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTG 300 consensus_7855#1 CAAGGGCCTGGTGCCGGCGGACTACCTGGAAAAGCTGGCCCGCCTGTTCCAGGATCCGTG 273 ******************** *************************************** consensus_7855#0 GGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGA 360 consensus_7855#1 GGAGCACGCGAAGGGTAAGGTGAAGCCGCGCGAACCGCTCGCCGTCATTTGCCATGGCGA 333 ************************************************************ consensus_7855#0 CTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCAC 420 consensus_7855#1 CTATCTGCGCAACAACATGGCGTTCCGGTACGCAGATGCGAAGAACCCAGCCCGACCCAC 393 ************************************************************ consensus_7855#0 TCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGC 480 consensus_7855#1 TCAAGTGATGATGTTTGACTTTCAAACGCTGCGCTACGCATCACCGATGATCGATTATGC 453 ************************************************************ consensus_7855#0 TGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTT 540 consensus_7855#1 TGCCTTCCTTGCCAACTCGACCGGGTACGCCGAGCGGGAGCACCATTTCGATACCATCTT 513 ************************************************************ consensus_7855#0 CCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACCGTCGTCGGCGTTCCCGAGCC 600 consensus_7855#1 CCGCACCTATCACGGTGCGCTGGTACAGACGGTGGCCACCGTCGTCGGCGTTTCCGAGCC 573 **************************************************** ******* consensus_7855#0 CGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTA 660 consensus_7855#1 CGCCGATCTGCCACCGTACTTCAGCTACGAATCATTCCATCGCGAGCTGGCCGAATACTA 633 ************************************************************ consensus_7855#0 CTCGTACGGCTTCAACATTGCGTCCGCGTTCCTGAC--TTGTGCGATGGGTTTTAAAGTT 718 consensus_7855#1 CTCGTACGGCTTTAACATTGCGTCCGCGTTCCTGATGATACTGCACGAACCGATGGAGAT 693 ************ ********************** * *** * ** * consensus_7855#0 TTAATTTTGCGCCACAATGGTTATTGAAGGTGGTAATGGGGTATTTGATCAATAGTGATA 778 consensus_7855#1 ATCATTCACCGAAAACATCTTCACCGAGGAGGAATCGGTGGCCGATGCGTGGAAGCGGGG 753 * *** ** * ** * * ** * * * ** ** ** * consensus_7855#0 AAGGTTCTGGTAAGAGCAGCTTCCATTAA-GATGCCATCAAGCTTTTCATACCAGTATGT 837 consensus_7855#1 CGGCGAACCACTCGACCGGGAGCTGGCGGCGATGGTGTACGAGATGTACCGGCTCCACTC 813 * ** * * * **** * * * * * consensus_7855#0 TCTTTATTGCGACTGTT--GCATGATTGAATTTCGTGTCATGCAAAACTGTAAAATAATA 895 consensus_7855#1 CCAGTACGGGCTCGATCCGGTGTGATCGGGTTTCTCCTGGGTGGAGCGTGCGGATCGATG 873 * ** * * * * **** * **** * * ** * ** consensus_7855#0 TTAAAGATCTGGCAACGAGTTCTACTGAACGTCTGATGTACCATTTCAGTAAAGTCGATA 955 consensus_7855#1 --GAAGTGCTG--AACAGGCTCACCACAGCAACACGTGCGC-------GCACCATTGACT 922 *** *** *** * ** * * * * ** * * * * ** consensus_7855#0 CCTGAGTCCGAGCTTGGTATTTCATTTCATTTTTTTCCAAATTTATTCCAAAAACCTAAA 1015 consensus_7855#1 TGTGCGATGGGTTTTAACGTTTTAATTT-TGCGCCACAATGGTTATTGAAGGGAATGGGG 981 ** * * ** *** * ** * * * ***** * * consensus_7855#0 GACTACA-CAGCGCTTTCGAATGAATCG--AAATCTAAATTTCCTGGAATAAAGCAATTG 1072 consensus_7855#1 TATTTGATCAATAGTGATAAAGGTTCTGGTAAGAGCAGCTTCCATTAAGTTAAAAAAAAG 1041 * * * ** * ** * * ** * ** * * * * ** ** * consensus_7855#0 CTCTGCAGCTTACCAGT----- 1089 consensus_7855#1 CTTTTCATTCCAGTAAAAAAAA 1063 ** * ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||