cluster # 7907

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Anopheles gambiae
cluster # 7907 cluster # 7907 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7907#0 length = 698 sequences # 7

consensus_7907#1 length = 315 sequences # 1

consensusID : consensus_7907#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 698
fasta sequence

                              [CCGCTCGGATAAATCGGCTTGTGGTTTTGGTAAAAATTACGTAAAATAAAAACACACAAATCCTGCTTGATCTTTCCTGCGAGTGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTGAAATAGGAAGGACGAGTTGTGTTTATTATTTCTGCCTCGGCCGTAGACAATTTTCGGACTGTGGTACAATTATACTTCAACAGTAAGCGACAACGTATATGCTCGTATGACAACGGATC]

[+] EMBL BM625647             [CCGCTCGGATAAATCGGCTTGTGGTTTTGGTAAAAATTACGTAAAATAAAAACACACAAATCCTGCTTGATCTTTCCTGCGAGTGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTG                                                                                                                                                   ]
[+] EMBL BM590527             [                                                                        ccgCCTGCGAGTGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGG                                                                                                                                                  ]
[+] EMBL BM608859             [                                                                               ccgGTGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTG                                                                                                                       ]
[+] EMBL BM636227             [                                                                                 ccgGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTGAAATAGG                                                                                                                ]
[+] EMBL BM607622             [                                                                                     TTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGT                                                                                                                                                 ]
[+] EMBL BM624225             [                                                                                       ccgGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTGAAATAGGAAGGACGAGTTGTGTTTATTATTTCTGCCTCGGCCGTAGACAATTTTCGGACTGTGGTACAATTATACTTCAACAGTAAGCGACAACGTATATGCTCGTATGACAACGGATC]
[-] EMBL CNS08V6A             [                                                                                                                                                                                                                                                                                                                                                                                                      CATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGGGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTGAAATAGa                                                                                                                ]




>consensus_7907#0
CCGCTCGGATAAATCGGCTTGTGGTTTTGGTAAAAATTACGTAAAATAAAAACACACAAA
TCCTGCTTGATCTTTCCTGCGAGTGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGT
TGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGC
CTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAA
AAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAA
ATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACAT
TATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCT
GGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCC
CCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAAC
ACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTGAAATAGGAAGGACGAGTTGTG
TTTATTATTTCTGCCTCGGCCGTAGACAATTTTCGGACTGTGGTACAATTATACTTCAAC
AGTAAGCGACAACGTATATGCTCGTATGACAACGGATC

consensusID : consensus_7907#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [GGAATCGTTCGATATGATCGAGATCGGCGACACGAAGGTGATGATACCGCGCAGCCGCGACGGCTCACCGTACGACGATGCGGAGAGCCGCGCGCGGGAGGAGCAGGAGGACAATGAGCGGGTGGCGCGGGAAAACCAGCGCATCATCGAGACGGTCGAGGCGAGCATCAAGAAGGAGGCCGGCGAGACGGGCAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCT]

[+] EMBL BX617055             [GGAATCGTTCGATATGATCGAGATCGGCGACACGAAGGTGATGATACCGCGCAGCCGCGACGGCTCACCGTACGACGATGCGGAGAGCCGCGCGCGGGAGGAGCAGGAGGACAATGAGCGGGTGGCGCGGGAAAACCAGCGCATCATCGAGACGGTCGAGGCGAGCATCAAGAAGGAGGCCGGCGAGACGGGCAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCT]




>consensus_7907#1
GGAATCGTTCGATATGATCGAGATCGGCGACACGAAGGTGATGATACCGCGCAGCCGCGA
CGGCTCACCGTACGACGATGCGGAGAGCCGCGCGCGGGAGGAGCAGGAGGACAATGAGCG
GGTGGCGCGGGAAAACCAGCGCATCATCGAGACGGTCGAGGCGAGCATCAAGAAGGAGGC
CGGCGAGACGGGCAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCA
GCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAA
ATAAAACGCGGGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7907#0      CCGCTCGGATAAATCGGCTTGTGGTTTTGGTAAAAATTACGTAAAATAAAAACACACAAA 60
consensus_7907#1      ------------------------------------------------------------
                                                                                  

consensus_7907#0      TCCTGCTTGATCTTTCCTGCGAGTGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGT 120
consensus_7907#1      ------------------------------------------------------------
                                                                                  

consensus_7907#0      TGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGC 180
consensus_7907#1      ------------------------------------------------------------
                                                                                  

consensus_7907#0      CTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAA 240
consensus_7907#1      ------------------------------------------------------------
                                                                                  

consensus_7907#0      AAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAA 300
consensus_7907#1      ----------------GGAATCGTTCGATATGATCG-AGATCGGCGACACGAAGGTGATG 43
                                          *  * * **     *  * ****    *   ***      

consensus_7907#0      ATTCCAT-TGGATATACCGGCCCTCCCTTCGA----GCGGAGAGTTATGCTTTGTGACGA 355
consensus_7907#1      ATACCGCGCAGCCGCGACGGCTCACCGTACGACGATGCGGAGAGCCGCGCGCGGGA--GG 101
                      ** **     *      **** * ** * ***    ********    **   *    * 

consensus_7907#0      AACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCT 415
consensus_7907#1      AGCAGGAGGACAATGAGCGGGTGGCGCGGGAAAACCAGCGCATC-ATCGAGACGGTCGA- 159
                      * **  *  ******** * ***         *  **   **** ****      * *  

consensus_7907#0      ATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAAC 475
consensus_7907#1      -----GGCGAGCATCAAGAAGGAGGCCGGCGAGACGGGCAACAAGCCCTGGACGCTCAAC 214
                           *** **     * *    **   *   *      *********************

consensus_7907#0      CAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTT 535
consensus_7907#1      CAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTT 274
                      ************************************************************

consensus_7907#0      TAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTGAAATAGGAAGGACGAG 595
consensus_7907#1      TAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCT------------------- 315
                      *****************************************                   

consensus_7907#0      TTGTGTTTATTATTTCTGCCTCGGCCGTAGACAATTTTCGGACTGTGGTACAATTATACT 655
consensus_7907#1      ------------------------------------------------------------
                                                                                  

consensus_7907#0      TCAACAGTAAGCGACAACGTATATGCTCGTATGACAACGGATC 698
consensus_7907#1      -------------------------------------------