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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1269 fasta sequence
[CCGCATATTTTTTATATTTTG-CATTTTGCATCGAATTATCCTTAGCCATTAATCTTAAAAACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCAGGTTCA-TGGTTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAATTAACTTAATAATTTATGCTCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAATCGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGATCAAAAGTAATTCGAATTTAAAATAATCTGTATCTTAACATCAATTCACCAACCAACAGGGAGCACGTGGGAACTGCCGATGAGTAAGGTCTTTTATCGCGTTGGAGAGAAGCGAAGATCATCCTGGGTGTTATGCAAGCAACCATAAGTTATCCATTGTCACAAATAACAGTCGTGTTCGTGGTACA-GCACTTAGCTGGATAAGAGGAACGCCG-GCAGGTTTGTC-AAGCCAAGGTGCCCTTA-TTTCACATCGACTGGCGCGAAGATTGTGCATCGTCCGCAAGCCAATCGATTGGGGCCACCTGGCCGGATAACCCTGCCCGGGCGCTTATAAGCCACCTCCAGATCGCTCGATGGTGATCTGCTTCTTGAGACGTTCCTGCTCCTTGCGGATTTCTTCCTGTTCCGCCACCGCAGCAAACCGAGAGTGCGATACAAATCCGGACTTGATTGCCGACATCATCTGTAGGTACTCCTCCAGCTCGACCTGTCCGTTCATGTTGGTGTCGATTTCCTTGAGAATGTCGTGCAGCTCTTCGCCACTGACCTCCGCATCGCCGAACGACTTCATTGCGCGCTTAATGTCGGTGATCGACACGTAGCCCTTCTTCTCCTTGTCGATCGTTTCGAAGCGCTTCACGTACATGTCGACCTCCTGCTTGGAGAGATTGATCGGTACCTTCTCCTTCAGTGTGCGGTTAGCTTGGTGGCCCATCTGCGTCTGCAGGAAGTGTTCGCACTGCTTTATCTGGCGCTCCTTTTCGTCCTTTGACCACTTTAGCTCCTCCGCCATGATGTCTGCAATCATGGGGAGCGCCTCGATAGCGGCCTGCACATTCAGGAACGACAGTCGCAAACGGCGCGAAATCATGTCCACGCAAGTGCAGGCATACTCGCGAATGCCGTAGCGCACCTCCGCATCAATGTACGGGAACTCCGGATGCAGCTTCTTGCCGCGGACGCGTGGGCGG]
[-] EMBL BM641108 [CCGCATATTTTTTATATTTTGACATTTTGCATCGAATTATCCTTAGCCATTAATCTTAAAAACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCAGGTTCACCCCCTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAAGTAACTTAATAATTTATGCTCATTGTTTGTATCGGGTAGTGCCGcgg ]
[+] EMBL CNS08L7T [ aTTTTAATTTG CATTTTGCATCGAATTATCCTTAGCCATTAATCTTAAAAACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCAGGTTCA TGGTTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAATTAACTTAATAATTTATGCTCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAATCGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGATCAAAAGTAATTCGAATTTAAAATAATCTGTATCTTAACATCAATTCACCAACCAACAGGGAGCACGTGGGAACTGCCGATGAGTAAGGTCTTTTATCGCGTTGGAGAGAAGCGAAGATCATCCTGGGTGTTATGCAAGCAACCATAAGTTATCCATTGTCACAAATAACAGTCGTGTTCGTGGTACA GCACTTAGCTGGATAAGAGGAACGCCG GCAGGTTTGTC AAGCCAAGGTGCCCTTA TTTCACATCGACTGGCGCGAAGATTGTGCATCGTCCGCAAGCCAATCGATTGGGGCCACCTGGCCGGATAATCCTGCCCGGGCGCTTATAAGCCACCTCCAGATCGCTCGATGGTGATCTGCTTCTTGAGACGTTCCTGCTCCTTGCGGATTTCTTCCTGTTCCGCCACCGCAGCAAACCGAGAGTGCGATACAAATCCGGACTTGATTGCCGACATCATCTGTAGGTACTCCTCCAGCTCGACCTGTCCGTTCATGTTGGTGTCGATTTCCTTGAGAATGTCGTGCAGCTCTTCGCCACTGACCTCCGCATCGCCGAACGACTTCATTGCGCGCTTAATGTCGGTGATCGACACGTAGCCCTTCTTCTCCTTGTCGATCGTTTCGAAGCGCTTCACGTACATGTCG ]
[+] EMBL CNS08GP0 [ atTTTTA CATTTTGCATCGAATTATCCTTAGCCATTAATCTTAAAAACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCAGGTTCA TGGTTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAATTAACTTAATAATTTATGCTCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAATCGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGATCAAAAGTAATTCGAATTTAAAATAATCTGTATCTTAACATCAATTCACCAACCAACAGGGAGCACGTGGGAACTGCCGATGAGTAAGGTCTTTTATCGCGTTGGAGAGAAGCGAAGATCATCCTGGGTGTTATGCAAGCAACCATAAGTTATCCATTGTCACAAATAACAGTCGTGTTCGTGGTACAGGCACTTAGCTGGATAAGAGGAACGCCGTTTTGGTTTGg ]
[-] EMBL BM653229 [ gaATCGAATTATCCTTAGCCATTAATCTTAAAAACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCAGGTTCA TGGTTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAAGTAACTTAATAATTTATGCTCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAATCGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGATCAAAAcgg ]
[-] EMBL BM624221 [ ACATTTTTCAGGTTCA TGG TTTTGCAATTTCACTTTTTTCGTTGTTTGTTTGTGGAAATTAACTTAATAATTTATGCGCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAATCGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGATCAAAAGTAATTCGAATTTAAAATAATCTGTATCTTAACATCAATTCACCAACCAACAGGGAGCACGTGGGAACTGCCGATGAGTAAGGTCTTTTATCGCGTTGGAGAGGAGCGAAGGTCATCTTGGGTGTTATGCAAGCAACCATAAGTTATCCATTGTCACAAATAACAGCCGTGTTCGTGGTACA GCACTTAGCTGGATAAGAGGAACGCCG GCAGGTTTGTCAAAGCCAAGGTGCCCGCAGGTGCACATCGACTGGCGCGAAGATTGTGCATCGCCGGCAAGCCAATCGATTGGGGCCACCTGGCCGGATAACCCTGCTCGGGCGCTTATAAGCCACCTCCAGATCGCTCGATGGTGATCTGCTTCTTGAGACGTTCCTGCTCCTTGCGGATTTCTTCCTGTTCCGCgg ]
[-] EMBL BM626034 [ GCCAATCGATTGGGGCCACCTGGCCGGATAACCCTGCCCGGGCGCTTATAAGCCACCTCCAGATCGCTCGATGGTGATCTGCTTCTTGAGACGTTCCTGCTCCTTGCGGATTTCTTCCTGTTCCGCCACCGCAGCAAACCGAGAGTGCGATACAAATCCGGACTTGATTGCCGACATCATCTGTAGGTACTCCTCCAGCTCGACCTGTCCGTTCATGTTGGTGTCGATTTCCTTGAGAATGTCGTGCAGCTCTTCGCCACTGACCTCCGCATCGCCGAACGACTTCATTGCGCGCTTAATGTCGGTGATCGACACGTAGCCCTTCTTCTCCTTGTCGATCGTTTCGAAGCGCTTCACGTACATGTCAACCTCCTGCTTGGAGAGATTGATCGGTACCTTCTCCTTCAGTGTGCGGTTAGCTTGGTGGCCCATCTGCGTCTGCAGGAAGTGTTCGCACTGCTTTATCTGGCGCTCCTTTTCGTCCTTTGACCACTTTAGCTCCTCCGCCATGATGTCTGCAATCATGGGGAGCGCCTCGATAGCGGCCTGCACATTCAGGAACGACAGTCGCAAACGGCGCGAAATCATGTCCACGCAAGTGCAGGCATACTCGCGAATGCCGTAGCGCACCTCCGCATCAATGTACGGGAACTCCGGATGCAGCTTCTTGCCGCGGACGCGTGGGCGG]
consensusID : consensus_7909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence
[CCGCCCACGCGTCCGCGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACAACAAGGCAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTATTGTGTCTGATTTAATAAAGTAATGTGACTTTAC]
[+] EMBL BM579252 [CCGCCCACGCGTCCGCGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACAACAAGGCAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTATTGTGTCTGATTTAATAAAGTAATGTGACTTTAC]
consensusID : consensus_7909#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence
[CCGCCTGCCTCGTTGTTGGCGGCAGGTGATACCTTTCCGTGCTCCCCACAGCCGCCGCCCCCCAGGTGGTCTGTTGTGCGTGCGCGTTTTTTCTTTCGGTGCGTGAGATTTATTTTTCAAATCTTACCATTCAGTGTGT]
[+] EMBL BM605916 [CCGCCTGCCTCGTTGTTGGCGGCAGGTGATACCTTTCCGTGCTCCCCACAGCCGCCGCCCCCCAGGTGGTCTGTTGTGCGTGCGCGTTTTTTCTTTCGGTGCGTGAGATTTATTTTTCAAATCTTACCATTCAGTGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7909#0 CCGCATATTTTTTATATTTTGCATTTTGC-ATCGAATTATCCTTAGCCATTAATCTTAAA 59
consensus_7909#2 ------------------CCGCCTGCCTC-GTTG--TTGGCGGCAGGTGATACCTTTCCG 39
consensus_7909#1 CCGCCCACGCGTCCGCGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAAT 60
* * * * * * *
consensus_7909#0 AACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCA 119
consensus_7909#2 TGCTCCCCACAGCCGCCGCCCCCCAGGTGGTCTG--TTGTGCGTGCGCGTTTTTTCTTTC 97
consensus_7909#1 CGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCG-AAAAAAGCCGGTGGTGCC 119
** * * *** * * * * *
consensus_7909#0 GGTTCATGGTTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAATTAACTTAATA 179
consensus_7909#2 GGTGCGTGAGATTTATTTTTCAAATCTTACCATTCAGTGTGT------------------ 139
consensus_7909#1 AAGGGATAAGACCTAGTCCTCGA---CCAACATCCGTAGAGGTTATTTATTGCGGTAAGA 176
* * ** * * * *
consensus_7909#0 ATTTATGCTCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAAT 239
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 AAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTG 236
consensus_7909#0 CGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGAT 299
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 CAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATAC 296
consensus_7909#0 CAAAAGTAATTCGAATTTAAAATAATCTGTATCTTAACATCAATTCACCAACCAACAGGG 359
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 GAAATAGACGTACAACAAGGCAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGA 356
consensus_7909#0 AGCACGTGGGAACTGCCGATGAGTAAGGTCTTTTATCGCGTTGGAGAGAAGCGAAGATCA 419
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 TCGTATTGTGTCTGATTTAATAAAGTAATGTGACTTTAC--------------------- 395
consensus_7909#0 TCCTGGGTGTTATGCAAGCAACCATAAGTTATCCATTGTCACAAATAACAGTCGTGTTCG 479
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 TGGTACAGCACTTAGCTGGATAAGAGGAACGCCGGCAGGTTTGTCAAGCCAAGGTGCCCT 539
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 TATTTCACATCGACTGGCGCGAAGATTGTGCATCGTCCGCAAGCCAATCGATTGGGGCCA 599
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 CCTGGCCGGATAACCCTGCCCGGGCGCTTATAAGCCACCTCCAGATCGCTCGATGGTGAT 659
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 CTGCTTCTTGAGACGTTCCTGCTCCTTGCGGATTTCTTCCTGTTCCGCCACCGCAGCAAA 719
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 CCGAGAGTGCGATACAAATCCGGACTTGATTGCCGACATCATCTGTAGGTACTCCTCCAG 779
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 CTCGACCTGTCCGTTCATGTTGGTGTCGATTTCCTTGAGAATGTCGTGCAGCTCTTCGCC 839
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 ACTGACCTCCGCATCGCCGAACGACTTCATTGCGCGCTTAATGTCGGTGATCGACACGTA 899
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 GCCCTTCTTCTCCTTGTCGATCGTTTCGAAGCGCTTCACGTACATGTCGACCTCCTGCTT 959
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 GGAGAGATTGATCGGTACCTTCTCCTTCAGTGTGCGGTTAGCTTGGTGGCCCATCTGCGT 1019
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 CTGCAGGAAGTGTTCGCACTGCTTTATCTGGCGCTCCTTTTCGTCCTTTGACCACTTTAG 1079
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 CTCCTCCGCCATGATGTCTGCAATCATGGGGAGCGCCTCGATAGCGGCCTGCACATTCAG 1139
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 GAACGACAGTCGCAAACGGCGCGAAATCATGTCCACGCAAGTGCAGGCATACTCGCGAAT 1199
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 GCCGTAGCGCACCTCCGCATCAATGTACGGGAACTCCGGATGCAGCTTCTTGCCGCGGAC 1259
consensus_7909#2 ------------------------------------------------------------
consensus_7909#1 ------------------------------------------------------------
consensus_7909#0 GCGTGGGCGG 1269
consensus_7909#2 ----------
consensus_7909#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||