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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1298 fasta sequence
[ACCGGTGGCATGGACCGAAACGGTGTTAAGCATCCGTGTTAAATTTACATTTTTACTTTACAAACGAGCATTTGTACATGGTTTCGCACTAACGACAGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTGCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTT-TGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCGTGCCCTGGGAAACGGTACAGCTGACCGCATTCGGTAGGGATAAGAATTTGTACTTTAAAATTCTGGAGGAGGCCCGGCAGCTGGCGCTGAAAAACACGGAAGGAAAGACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAAGCGACGGTCCCATCGGTTCGGTGGTGCTTGACGAAGGTGTTTCCGAGCGCATATTGCGCGACTGCCGGGAGTTTATCAAAAACCCGCAATGGTACTCGGACCGCGGAATACCTTACCGGCGAGGATATCTGCTGCACGGGCCGCCCGGTTGCGGCAAATCCAGCTTCATCACTGCACTGGCCCGGCGAAATCGAGTTCGGCATCTGTCTGCTAAACCTGTCCGAACGTGGCCTGACCGACGATCGATTAAATCACCTGATGAACGTGGCACCCCAGCAGTCGATCATACTGCTTGAGGACATCGATGCGGCGTTCGTATCGCGTCAGGACACGCTGCAGCAGAAGGCCGCCTACGAAGGGCTGAACCGTGTCACCTTTAGCGGGCTGCTAAACTGCCTCGACGGTGTTGCATCCACCGAGGCACGCATCGTCTTCATGACGACAAACTACCTCGAGCGGCTCGATCCAGCACTCATACGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACTGTTCACGCCACCAGCTCGAGCAAATGTTCCGCCGCTTCTACACCGGCACGGACGCGGAGGCAAATGCTCGCATCTTTGCGGAGCTCGTAGCGGCCGACGGGCGCAACGTAAGCC]
[+] EMBL BM645775 [ CCGGTGGCATGGACCGAAACGGTGTTAAGCATCCGTGTTAAATTTACATTTTTACTTTACAAACGAGCATTTGTACATGGTTTCGCACTAACGACGGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTTCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTT TGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCGTGCCCTGGGAAACGGTACAGCTGACCGCATTCGGTAGGGATAAGAATTGGTACTTTAAAATTCTGGAGGAGGCCCGGCAGCTGGCGCTGAAAAACACGGAAGGAAAGACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAAGCGAC GTCCCATCGGTTCGGTGGTGCTTGAC ]
[+] EMBL CNS08KLI [ GTGGCATGGACCGAAACGGTGTTAAGCATCCGTGTTAAATTTACATTTTTACTTTACAAACGAGCATTTGTACATGGTTTCGCACTAACGACAGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTGCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTTATGAACAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTAGACCGTGCCCGGGAACAGCACACGCTCGACCTGTTTATGGGCGTGCCCTGGGAAACGGTACAGCTGACCGCATTCGGTAGGGATAAGAATTTGTACTTTAAAATTCTGGAGGAGGCCCGGCAGCTGGCGCTGAAAAACACGGAAGGAAAGACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAA GACGGTCCCATCGGTTCGGTGGTGCTTGACGAAGGTGTTTCCGAGCGCATATTGCGCGACTGCCGGGAGTTTATCAAAAATCCGCAATGGTACTCGGACCGTGGAATACCTTACCGGCGAGGGTATCTGCTGCACGGGCCGCCCGGTTGCGGCAAATCCAGCTTCATCACTGCACTGGCCCGGCGAAATCGAGTTCGGCATCTGTCTGCTAAACCTGTCCGAACGTGGCCTGACCGACGATCGATTAAATCACCT ]
[+] EMBL CNS08ZBB [aagtGTGGCATGGACCGAAACGGTGTTAAGCATCCGTGTTAAATTTACATTTTTACTTTACAAACGAGCATTTGTACATGGTTTCGCACTAACGACAGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTGCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTT TGAACAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTAGACCGTGC ]
[+] EMBL BM599570 [ ccgATTTGTACATGGTTTCGCACTAACGACGGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTGCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTT TGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCGTGCCCTGGGAAACGGTACAGCTGACCGCATTCGGTAGGGATAAGAATTTGTACTTTAAAATTCTGGAGGAGGCCCGGCAGCTGGCGCTGAAAAACACGGAAGGAAAAACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAAGCGAC GTCCCATCGGTTCGGTGGTGCTTGACGAAGGTGTTTCCGAGCGCATATTGCGC ]
[+] EMBL BX624432 [ CACTAACGACAGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTGCAGTGGATCACACAGAAGGGAGCCCGACAAACGCAGCATCTCAGCGTGGAGACGTCCTT TGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCGTGCCCTGGGAAACGGTACAGCTGACCGCATTCGGTAGGGATAAGAATTTGTACTTTAAAATTCTGGAGGAGGCCCGGCAGCTGGCGCTGAAAAACACGGAAGGAAAGACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAAGCGACGG CCCATCGGTTCGGTGGTGCTTGACGAANGTGTTTCCGAGCGCATATTGCGCGACTGCCGGGAGTTTATCAAAAACCCGCAATGGTACTCGGACCGCGGAATACCTTACCGGCGAGGATATCTG ]
[+] EMBL BM656499 [ ccgGGAAAGACGATCATGTACACGGCGATGGGCTCGGAATGGCGACCCTTCGGACATCCGCGCAAGCGACGG CCCATCGGTTCGGTGGTGCTTGACGAAGGTGTTTCCGAGCGCATATTGCGCGACTGCCGGGAGTTTATCAAAAACCCGCAATGGTACTCGGACCGCGGAATACCTTACCGGCGAGGATATCTGCTGCACGGGCCGCCCGGTTGCGGCAAATCCAGCTTCATCACTGCACTGG CCGGCGAAATCGAGTTCGGCATCTGTCTGCTAAACCTGTCCGAACGAGGCCTGACCGACGATCGATTAAATCACTTGATGAACGTGGCACCCCAGCAGTCGATCATACTGCTTGAGGACATCGATGCGGCGTTCGTATCGCGTCAGGACACGCTGCAGCAGAAGGCCGCCTACGAAGGGCTGAACCGTGTCACCTTTAGCGGGCTGCTAAACTGCCTCGACGGTGTTGCATCCACCGAGGCACGCATCGTCTTCATGACGACAAACTACCTCGAGCGGCTCGATCCAGCACTCATACGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACTGTTCACGCCACCAGCTCGAGCAAATGTTCCGCCGCTTCTACACCGGCACGGACGCGGAGGCAAATGCTCGCATCTTTGCGGAGCTCGTAGCGGCCGACGGGCGCAACGTAAGCC]
consensusID : consensus_7929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[AGGCAAGAATCGGCACGTNGAGTTAATTTACATTTTTACTCCACAAACGTAGCATTTGTACATGGTTTCGCACTAACGACGGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTTCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTTTGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCAGTGCCCTGGGAAAACGGTACAGCTGACCGCATTCGGTAGGGACTAAGAATTTGTACTTTAAAATTCTGGAAGGAGGCCCGGCAGCTGGCGCTGAAAAACCACGGACAGGCNAAGACGANTCATGTACACCGGGCGATGGGCTCGGN]
[+] EMBL BX467170 [AGGCAAGAATCGGCACGTNGAGTTAATTTACATTTTTACTCCACAAACGTAGCATTTGTACATGGTTTCGCACTAACGACGGGCAACGGCAGACAGGATGACGATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTGTTCGGGGTCGGTGCCGGAGCAGCAATGTTACGTAAAGGGATGCAGGGAGCAATGATTTTGTTCCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGTGGCTGCTTCAGTGGATCACACAGAAGGGAGCACGACAAACGCAGCATCTCAGCGTGGAGACGTCCTTTGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCTCCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGGAGCAGCACACGCTCGACCTGCACATGGGCAGTGCCCTGGGAAAACGGTACAGCTGACCGCATTCGGTAGGGACTAAGAATTTGTACTTTAAAATTCTGGAAGGAGGCCCGGCAGCTGGCGCTGAAAAACCACGGACAGGCNAAGACGANTCATGTACACCGGGCGATGGGCTCGGN]
consensusID : consensus_7929#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence
[GCGGCTCGTTCCTGCACTCTTTCGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACTAAAAAAAAAACCAGCTCGAGCAAATGTTCCGCCGCTTCTACACCGGCACGGACGCGGAGGCAAATGCTCGCATCTTTGCGGAGCGTGTAGCGGCCGACGGGCGCAACGTAAGCCCGGCACAGGTCCAGGGCTACTTCATGGTGCACAAAATGTCCGATCAG]
[-] EMBL CNS08KLJ [GCGGCTCGTTCCTGCACTCTTTCGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACTAAAAAAAAAACCAGCTCGAGCAAATGTTCCGCCGCTTCTACACCGGCACGGACGCGGAGGCAAATGCTCGCATCTTTGCGGAGCGTGTAGCGGCCGACGGGCGCAACGTAAGCCCGGCACAGGTCCAGGGCTACTTCATGGTGCACAAAATGTCCGATCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7929#0 ACCGGTGGCATGGACCGAAACGGTGTTAAGCATCCGTGTTAAATTTACATTTTTACTTTA 60
consensus_7929#1 -----------------AGGCAAGAATCGGCACGTNGAGTTAATTTACATTTTTACTCCA 43
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 CAAACG-AGCATTTGTACATGGTTTCGCACTAACGACAGGCAACGGCAGACAGGATGACG 119
consensus_7929#1 CAAACGTAGCATTTGTACATGGTTTCGCACTAACGACGGGCAACGGCAGACAGGATGACG 103
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 ATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTG 179
consensus_7929#1 ATAGCGGAGTATATCGGTGCGCTTTCGGAGAATCCCTATTTCGGGGCCGGCTTCGGTTTG 163
consensus_7929#2 ----------------------------------------------------GCGGCTCG 8
*** * *
consensus_7929#0 TTCGGGGTCGGTGCCGGAGCAGCAATGTT-ACGTAAAGGGATGCAGGGAGCAATGATTTT 238
consensus_7929#1 TTCGGGGTCGGTGCCGGAGCAGCAATGTT-ACGTAAAGGGATGCAGGGAGCAATGATTTT 222
consensus_7929#2 TTCCTGCACTCTTTCGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACTAAAAAA 68
*** * * * *** * *** ** * ** **** ** * ** ** * *
consensus_7929#0 GTT-CCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGT 297
consensus_7929#1 GTT-CCGGCGGCACTACATGATTACGCTCGAGGTACCGTGCCGAGACAAATCGTACCAGT 281
consensus_7929#2 AAAACCAGCTCGAGCAAATG-TTCCGCC---GCTTCTACACCGGCACGGA-CGCGGAGGC 123
** ** * * *** ** *** * * * *** ** * ** *
consensus_7929#0 GGCTGCTGCAGTGGATCACACAGAAGGGAGCA--CGACAAACGCAGCATCTCAGCGTGG- 354
consensus_7929#1 GGCTGCTTCAGTGGATCACACAGAAGGGAGCA--CGACAAACGCAGCATCTCAGCGTGG- 338
consensus_7929#2 AAATGCTCGCATCT-TTGCGGAGCGTGTAGCGGCCGACGGGCGCAACGT--AAGCCCGGC 180
**** * * * ** * *** **** **** * * *** **
consensus_7929#0 AGACGTCCTTTGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCT 414
consensus_7929#1 AGACGTCCTTTGAGCAGCGCGACACGGGACACATTAAAACGCGGTACGACTTTATACCCT 398
consensus_7929#2 ACAGGTCC----AGGGCTACTTCATGGTGCACAA-AATGTCCGATCAG------------ 223
* * **** ** * ** ** **** ** ** * *
consensus_7929#0 CCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGG 474
consensus_7929#1 CCGTCGGTACGCACATCATGCGGTACGGCGGCACCTGGATAAAGGTGGACCGTGCCCGGG 458
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 AGCAGCACACGCTCGACCTGCACATGGGC-GTGCCCTGGGAAA-CGGTACAGCTGACCGC 532
consensus_7929#1 AGCAGCACACGCTCGACCTGCACATGGGCAGTGCCCTGGGAAAACGGTACAGCTGACCGC 518
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 ATTCGGTAGGGA-TAAGAATTTGTACTTTAAAATTCTGGA-GGAGGCCCGGCAGCTGGCG 590
consensus_7929#1 ATTCGGTAGGGACTAAGAATTTGTACTTTAAAATTCTGGAAGGAGGCCCGGCAGCTGGCG 578
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 CTGAAAAAC-ACGGAAGG--AAAGACGAT-CATGTACAC--GGCGATGGGCTCGGAATGG 644
consensus_7929#1 CTGAAAAACCACGGACAGGCNAAGACGANTCATGTACACCGGGCGATGGGCTCGGN---- 634
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 CGACCCTTCGGACATCCGCGCAAGCGACGGTCCCATCGGTTCGGTGGTGCTTGACGAAGG 704
consensus_7929#1 ------------------------------------------------------------
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 TGTTTCCGAGCGCATATTGCGCGACTGCCGGGAGTTTATCAAAAACCCGCAATGGTACTC 764
consensus_7929#1 ------------------------------------------------------------
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 GGACCGCGGAATACCTTACCGGCGAGGATATCTGCTGCACGGGCCGCCCGGTTGCGGCAA 824
consensus_7929#1 ------------------------------------------------------------
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 ATCCAGCTTCATCACTGCACTGGCCCGGCGAAATCGAGTTCGGCATCTGTCTGCTAAACC 884
consensus_7929#1 ------------------------------------------------------------
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 TGTCCGAACGTGGCCTGACCGACGATCGATTAAATCACCTGATGAACGTGGCACCCCAGC 944
consensus_7929#1 ------------------------------------------------------------
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 AGTCGATCATACTGCTTGAGGACATCGATGCGGCGTTCGTATCGCGTCAGGACACGCTGC 1004
consensus_7929#1 ------------------------------------------------------------
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 AGCAGAAGGCCGCCTACGAAGGGCTGAACCGTGTCACCTTTAGCGGGCTGCTAAACTGCC 1064
consensus_7929#1 ------------------------------------------------------------
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 TCGACGGTGTTGCATCCACCGAGGCACGCATCGTCTTCATGACGACAAACTACCTCGAGC 1124
consensus_7929#1 ------------------------------------------------------------
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 GGCTCGATCCAGCACTCATACGGCCCGGCAGAGTCGATGTGAAGGAATACGTGGGTCACT 1184
consensus_7929#1 ------------------------------------------------------------
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 GTTCACGCCACCAGCTCGAGCAAATGTTCCGCCGCTTCTACACCGGCACGGACGCGGAGG 1244
consensus_7929#1 ------------------------------------------------------------
consensus_7929#2 ------------------------------------------------------------
consensus_7929#0 CAAATGCTCGCATCTTTGCGGAGCTCGTAGCGGCCGACGGGCGCAACGTAAGCC 1298
consensus_7929#1 ------------------------------------------------------
consensus_7929#2 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||