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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 857 fasta sequence
[ACTGGAATCAAACAGCATCATCCGTGGCCGATTGGTGTGCCAAGAACGCAAACAAACTCGGACTGGCTATTTCTTGTGCGTCCCAAGCTTTCCCCATTTTGAGACCGTGCTATTTACTGTTCTGTATCGGTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGATATATTATAAAGGGAGTATCAAAATAAGCGAATAACGACTGAGGAAAATAAAATATGAAAATAAACGATTAAAGTC]
[-] EMBL CNS08O90 [ACTGGAATCAAACAGCATCATCCGTGGCCGATTGGTGTGCCAAGAACGCAAACAAACTCGGACTGGCTATTTCTTGTGCGTCCCAAGCTTTCCCCATTTTGAGACCGTGCTATTTACTGTTCTGTATCGGTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAAAACTTTTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTG ]
[+] EMBL CNS08O8Z [ ACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTATCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAATTTATTTTGGGGTGAAAAATTAAGCATGCCCA ]
[+] EMBL CNS08G6I [ ACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATCATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAAatt ]
[+] EMBL BX626606 [ CTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGATATATTATAAAGGGAGTATCAAAATAAGCGAA ]
[+] EMBL BX628362 [ GATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGAT ]
[+] EMBL BM646878 [ ccgACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGATATATTATAAAGGGAGTATCAAAATAAGCGAATAACGACTGAGGAAAATAAAATATGAAAATAAACGATTAAAGTC]
consensusID : consensus_7973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence
[AATTCCCCGAGGTTCGGACTGGCTATTTCTTGTGCGTCCAGCTTTCCCCCTTTTGAGACGTGCTATTTACTGTTCTGTATCGCTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCACAAAGCGATTTGCTTCAGAGATATTCTTTGCCTTTCGCTTCGACAGACTCACCGACTTATTAAATAATTGTCTCTATTGAAATTCCCTTTCAACGGCCGAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAANAAGGTTGTNACATCGTCGCTGACCGCGGACCGAGCTGCTGGAAACGATCAAGAACACGGGAAGGAAACAAGCTATGTGGGGGTGAACAAATTAAGCATGCTCAAGGGCCAGGATGGCACGTGCTAGGCTGGGACCGTGCCAAACAACCCTTTGCTTTTGAACCGAAAACGAGCACGCGAACGAATATTTTACCGGATAANGAAGAGCCCATCAGCAACACAATTCGACTGGAGAAGACCTCTTTAGTGTAACAACACTCATGTANTGTACGGAACTATACTGGCAACGACATCATTATACCGGGCAGTCTCACANNTAGCGAATTACCGCNNGGNG]
[+] EMBL AL693422 [AATTCCCCGAGGTTCGGACTGGCTATTTCTTGTGCGTCCAGCTTTCCCCCTTTTGAGACGTGCTATTTACTGTTCTGTATCGCTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCACAAAGCGATTTGCTTCAGAGATATTCTTTGCCTTTCGCTTCGACAGACTCACCGACTTATTAAATAATTGTCTCTATTGAAATTCCCTTTCAACGGCCGAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAANAAGGTTGTNACATCGTCGCTGACCGCGGACCGAGCTGCTGGAAACGATCAAGAACACGGGAAGGAAACAAGCTATGTGGGGGTGAACAAATTAAGCATGCTCAAGGGCCAGGATGGCACGTGCTAGGCTGGGACCGTGCCAAACAACCCTTTGCTTTTGAACCGAAAACGAGCACGCGAACGAATATTTTACCGGATAANGAAGAGCCCATCAGCAACACAATTCGACTGGAGAAGACCTCTTTAGTGTAACAACACTCATGTANTGTACGGAACTATACTGGCAACGACATCATTATACCGGGCAGTCTCACANNTAGCGAATTACCGCNNGGNG]
consensusID : consensus_7973#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[AAAACCTGCGGAATTCCTCGAGGACTGTTGGCCCACTGGGATTGGTGTGCCAAAAACGCAAACAAACTCGGACTGGCTATTTTTTGTGCGTCCCAAGCTTTCCCCCTTTTGAGACCGTGCTATTTACTGTTCTTTATCGCTTCGAGGACGTAAGAACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATCATTAGCAAAACTTTTGTGACGTGCCCGCTGTGGACTGGATTGCTCTTTTAACTATTGCAAAGCTGCAACGGGTTTTAAGTGCACCGATCCCATACGCGATTTGCTTTACAAATACTCTTTGTTTCGCTT]
[-] EMBL CNS08G6J [AAAACCTGCGGAATTCCTCGAGGACTGTTGGCCCACTGGGATTGGTGTGCCAAAAACGCAAACAAACTCGGACTGGCTATTTTTTGTGCGTCCCAAGCTTTCCCCCTTTTGAGACCGTGCTATTTACTGTTCTTTATCGCTTCGAGGACGTAAGAACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATCATTAGCAAAACTTTTGTGACGTGCCCGCTGTGGACTGGATTGCTCTTTTAACTATTGCAAAGCTGCAACGGGTTTTAAGTGCACCGATCCCATACGCGATTTGCTTTACAAATACTCTTTGTTTCGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7973#0 ----------ACTGGAATCAAACAGCATCATCCGTGGCCGATTGGTGTGCCAAGAACGCA 50
consensus_7973#1 ------------------------------------------------------AATTCC 6
consensus_7973#2 AAAACCTGCGGAATTCCTCGAGGACTGTTGGCCCACTGGGATTGGTGTGCCAAAAACGCA 60
** *
consensus_7973#0 AACAAACTCGGACTGGCTATTTCTTGTGCGTCCCAAGCTTTCCCCATTTTGAGACCGTGC 110
consensus_7973#1 CCGAGGTTCGGACTGGCTATTTCTTGTGCGTCC--AGCTTTCCCCCTTTTGAGAC-GTGC 63
consensus_7973#2 AACAAACTCGGACTGGCTATTTTTTGTGCGTCCCAAGCTTTCCCCCTTTTGAGACCGTGC 120
* *************** ********** ********** ********* ****
consensus_7973#0 TATTTACTGTTCTGTATCGGTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGC 170
consensus_7973#1 TATTTACTGTTCTGTATCGCTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGC 123
consensus_7973#2 TATTTACTGTTCTTTATCGCTTCGAGGACGTAAGAACGCTCTTTGGATCCTCGTCCGAGC 180
************* ***** ****** ******* *************************
consensus_7973#0 CACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCT 230
consensus_7973#1 CACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCT 183
consensus_7973#2 CACGACACAATATCATTAGCAAAACTTTTGTGACGTGCCCGCTGTGGACTGGATTGCTCT 240
************* ******** **** ****************** *************
consensus_7973#0 TCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTT 290
consensus_7973#1 TCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCAC-----CACAAAGCGATTTGCTT 238
consensus_7973#2 TTTAACTATTGCAAAGCTGCAACGGGTTTTAAGTGCACCGATCCCATACGCGATTTGCTT 300
* * ********** ************** ******** * * ***********
consensus_7973#0 CACAGATACTCTTTGC-TTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCT 349
consensus_7973#1 CAGAGATATTCTTTGCCTTTCGCTTCGACAGACTCACCGACTTATTAAATAATTGTCTCT 298
consensus_7973#2 TACAAATACTCTTTGT--TTCGCTT----------------------------------- 323
* * *** ****** *******
consensus_7973#0 ATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAAT 409
consensus_7973#1 ATTGAAATTCCCTTTCAACGGCCGAGCGACACGAACATAATGACTGTTCACGAATTTAAT 358
consensus_7973#2 ------------------------------------------------------------
consensus_7973#0 GTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAA 469
consensus_7973#1 GTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAA 418
consensus_7973#2 ------------------------------------------------------------
consensus_7973#0 GAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCG 529
consensus_7973#1 GAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAANAAGGTT---GTNACATCGTCG 475
consensus_7973#2 ------------------------------------------------------------
consensus_7973#0 CTGACCGCGGAC-GAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGT 588
consensus_7973#1 CTGACCGCGGACCGAGCTGCTGGAAACGATCAAGAACACGGGAA-GGAAACAAGCTATGT 534
consensus_7973#2 ------------------------------------------------------------
consensus_7973#0 GGGGGTGAA-AAATTAAGCATGCTCAAGG-CAAGGATGGCA-GTGCTAGGCTGGGAC-GT 644
consensus_7973#1 GGGGGTGAACAAATTAAGCATGCTCAAGGGCCAGGATGGCACGTGCTAGGCTGGGACCGT 594
consensus_7973#2 ------------------------------------------------------------
consensus_7973#0 GC-AAACA--CCTTTGCTTT-GAAC--GAAACGAGCACGCGAAG----ATATTACCG-AT 693
consensus_7973#1 GCCAAACAACCCTTTGCTTTTGAACCGAAAACGAGCACGCGAACGAATATTTTACCGGAT 654
consensus_7973#2 ------------------------------------------------------------
consensus_7973#0 AAGAGAG---CCATCAGCCACACA-TTCG-CTGGAGA-GACCTCTTTTGTGTTTAAAAAT 747
consensus_7973#1 AANGAAGAGCCCATCAGCAACACAATTCGACTGGAGAAGACCTCTTTAGTG--TAACAAC 712
consensus_7973#2 ------------------------------------------------------------
consensus_7973#0 ATGTTTTTATGTTTTGTTTACTATACTG-CAACGATAT-ATTATAAAGGG-AGTATCAAA 804
consensus_7973#1 ACTCATGTANTGTACGGA-ACTATACTGGCAACGACATCATTATACCGGGCAGTCTCACA 771
consensus_7973#2 ------------------------------------------------------------
consensus_7973#0 ATAAGCGAATAACGACTGAGGAAAATAAAATATGAAAATAAACGATTAAAGTC 857
consensus_7973#1 NNTAGCGAATTACCGCNNGGNG------------------------------- 793
consensus_7973#2 -----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||