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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 992 fasta sequence
[CCGCGGACGCGTGGGCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGTGTGCCCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTCTGTGTTTGTGTGATTGAGTGTGTGTCGATCTCTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGGTCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCGGCAGGAGTGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTACAAGAGCCTGCACATTGCCGGCATGGTCGGTTCGATCGATAACGATTTCTGCGGCACGGACATGACCATCGGTACGGATTCGGCGCTGCACCGTATCATCGAGGCGATCGACGCGATCGTCAGTACGGCGTACTCGCACCAGCGTACCTTCATCATGGAAGGTAATGGGTCGTCACTGTGGCTATCTAGCGGTCGTTGCCGGCGTCATTTCTGAGGCCGACTACGTCTTCATTCCCGAGTCTCCGCCGCCCCGCGACTGGGAGACCAAAATCTGCGACAAACTCGAACAGGAACGTTCGGCTGGCCAGCGTCTGAACATTATCA]
[+] EMBL BM623819 [CCGCGGACGCGTGGGCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGTGTGCCCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTCTGTGTTTGTGTGATTGAGTGTGTGTCGATCTCTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGGTCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCGGCAGGAGTGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGA ]
[+] EMBL BX625738 [ AGTGTGTGTCGATCTCTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGGTCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCGGCAGGAGTGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTACAAGAGCCTGCACATTGCCGGCATGGTCGGTTCGATCGATAACGATTTCTGCGGCACGGACATGACCATCGGTACGGATTCGGCGCTGCACCGTATCATCGAGGCGATCGACGCGATCGTCAGTACGGCGTACTCGCACCAGCGTACCTTCATCATGGAAGGTAATGGGTCGTCACTGTGGCTATCTAGCGGTCGTTGCCGGCG ]
[+] EMBL BM637340 [ ccgATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGGTCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCGGCAGGAGTGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTACAAGAGCCTGCACATTGCCGGCATGGTCGGTTCGATCGATAACGATTTCTGCGGCACGGACATGACCATCGGTACGGATTCGGCGCTGCACCGTATCATCGAGGCGATCGACGCGATCGTCAGTACGGCGTACTCGCACCAGCGTACCTTCATCATGG AGGTGATGGGTCGTCACTGTGGCTATCTAGCGGTCGTTGCCGGCGTCATTTCTGAGGCCGACTACGTCTTCATTCCCGAGTCTCCGCCGCCCCGCGACTGGGAGACCAAAATCTGCGACAAACTCGAACAGGAACGTTCGGCTGGCCAGCGTCTGAACATTATCA]
consensusID : consensus_7977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 784 fasta sequence
[CCGGTCACCTTGAGATGTCACGGATCACCTTTGGGAAGCCCGTCCACTAGCGAGAAAAAAGGAACCGCCGTTTGTGTTCGCCTCTTGCAGTTGCGTTTCTCTCACAACCGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT----CCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTC------TGTGTGATTGA--GTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACT-GGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAA-TCTGGTCGTGATC-GGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCCGGCAGGAGTGGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTACAAGAGCCTG]
[+] EMBL BM591091 [CCGGTCACCTTGAGATGTCACGGATCACCTTTGGGAAGCCCGTCCACTAGCGAGAAAAAAGGAACCGCCGTTTGTGTTCGCCTCTTGCAGTTGCGTTTCTCTCACAACCGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT CCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTC TGTGTGATTGA GTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACT GGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAA TCTGGTCGTGATC GGTGGTGACGGTTCGCTGACCG ]
[+] EMBL BM590152 [ ccgAAAAAGGAACCGCCGTTTGTGTTCGCCTCTTGCAGTTGCGTTTCTCTCACAACAGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGTGTGCCCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTCTGTGTTTGTGTGATTGAGTGTGTGTCGATCTC TGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACT GGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATC ]
[+] EMBL BM630427 [ ccgCGCCTCTTGCAGTTGCGTTTCTCTCACAACCGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT CCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTC TGTGTGATTGA GTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACT GGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGC ]
[+] EMBL BM615036 [ ccgTGCGTTTCTCTCACAACCGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT CCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTC TGTGTGATTGA GTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATTCTGGTCGTGATCGGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCCGGCAGGAGTGGGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGA ]
[+] EMBL BM655511 [ ccgCTCTCACACCCGAGTCGGTGGCTGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT CCGTGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTC TGTGTGATTGA GTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATATCATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACAAGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCGTCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAGGCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACT GGTCGTCGGTGTCGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCGAGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAA TCTGGTCGTGATC GGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTT CCGGCAGGAGT GGGGCAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTACAAGAGCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7977#0 ------------------------------------------------------------
consensus_7977#1 CCGGTCACCTTGAGATGTCACGGATCACCTTTGGGAAGCCCGTCCACTAGCGAGAAAAAA 60
consensus_7977#0 -----------------------------------------------CCG---CGGACGC 10
consensus_7977#1 GGAACCGCCGTTTGTGTTCGCCTCTTGCAGTTGCGTTTCTCTCACAACCGAGTCGGTGGC 120
*** *** **
consensus_7977#0 GTGGGCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGTGTGCCCG 70
consensus_7977#1 TGATTCGCGGACTCCGAGACACCCCTCTATCGTAGCACCTCCCAGCAGCGTGT----CCG 176
************************************************ ***
consensus_7977#0 TGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTCTGTGTTTGTGT 130
consensus_7977#1 TGTGTGTGGTACAGTTCGGTGGATTAACGCAGCTAGAGAACAGCGCGTCTGTGT--GATT 234
****************************************************** * *
consensus_7977#0 GATTGAGTGTGTGTCGATCTCTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATAT 190
consensus_7977#1 GAGTGTGTCGATCTCTGAGTGTGTGTGTGTAGGTTGTTGCATCAGCAGACAAAAGGATAT 294
** ** ** * ** * ***************************************
consensus_7977#0 CATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACA 250
consensus_7977#1 CATCGTCCGTGGAAATGTCGAGCGCACCGGTACAACGGTTTATTCAGTTCGGGGCCCACA 354
************************************************************
consensus_7977#0 AGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCG 310
consensus_7977#1 AGGGCAAGGGCATCGCCGTCTTCACCAGCGGCGGTGACTCCCAGGGCATGAATGCGGCCG 414
************************************************************
consensus_7977#0 TCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAG 370
consensus_7977#1 TCCGTGCGGTGGTACGCATGGGTATCTACGTCGGATGCAAGGTGTACTTCATCCGCGAAG 474
************************************************************
consensus_7977#0 GCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGT 430
consensus_7977#1 GCTACCAGGGCATGGTGGACGGTGGTGACAACATCGTCGAGGCAAACTGGTCGTCGGTGT 534
************************************************************
consensus_7977#0 CGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCG 490
consensus_7977#1 CGAGCATTATCCATCGCGGTGGTACCGTAATCGGTTCCGCCCGTTGTAAGGACTTCCGCG 594
************************************************************
consensus_7977#0 AGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGG 550
consensus_7977#1 AGCGGGCCGGACGGCTGCAGGCCGCCCACAATCTCGTGTCCCGCGGCATCACCAATCTGG 654
************************************************************
consensus_7977#0 TCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCC-GGCAGGAGTGGGG- 608
consensus_7977#1 TCGTGATCGGTGGTGACGGTTCGCTGACCGGTGCCAACCTGTTCCCGGCAGGAGTGGGGG 714
********************************************* *************
consensus_7977#0 CAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTA 668
consensus_7977#1 CAGCCTGCTGGACGAGCTGCTGGCCAGCAATCGGATCACGCAGGACCAGCGCATCAAGTA 774
************************************************************
consensus_7977#0 CAAGAGCCTGCACATTGCCGGCATGGTCGGTTCGATCGATAACGATTTCTGCGGCACGGA 728
consensus_7977#1 CAAGAGCCTG-------------------------------------------------- 784
**********
consensus_7977#0 CATGACCATCGGTACGGATTCGGCGCTGCACCGTATCATCGAGGCGATCGACGCGATCGT 788
consensus_7977#1 ------------------------------------------------------------
consensus_7977#0 CAGTACGGCGTACTCGCACCAGCGTACCTTCATCATGGAAGGTAATGGGTCGTCACTGTG 848
consensus_7977#1 ------------------------------------------------------------
consensus_7977#0 GCTATCTAGCGGTCGTTGCCGGCGTCATTTCTGAGGCCGACTACGTCTTCATTCCCGAGT 908
consensus_7977#1 ------------------------------------------------------------
consensus_7977#0 CTCCGCCGCCCCGCGACTGGGAGACCAAAATCTGCGACAAACTCGAACAGGAACGTTCGG 968
consensus_7977#1 ------------------------------------------------------------
consensus_7977#0 CTGGCCAGCGTCTGAACATTATCA 992
consensus_7977#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||