cluster # 7994

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Anopheles gambiae
cluster # 7994 cluster # 7994 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7994#0 length = 599 sequences # 2

consensus_7994#1 length = 523 sequences # 1
consensus_7994#2 length = 520 sequences # 5

consensusID : consensus_7994#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 599
fasta sequence

                              [CCGCCCACGCGTCCGGAAACTGCAAATAATTTCATCAGCAGAACCGTACAATCTGTGTTAAATAGTTATTTTAATAGAAAACTCCACAAACTCCTCGCTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTGAAAACGAGCGTGCTAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTTGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTAAATACATAAGTGCAGAGCGGCATATATAATATACCTCCAAGGAAAGTGAAAATGTGGATTGATTATTGTTTAAACAGTTTTATGTTCGTCTTTACAGTTTCATATTACCCCTGGACTGA]

[+] EMBL BM632037             [CCGCCCACGCGTCCGGAAACTGCAAATAATTTCATCAGCAGAACCGTACAATCTGTGTTAAATAGTTATTTTAATAGAAAACTCCACAAACTCCTCGCTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTGAAAACGAGCGTGCTAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTTGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTAAATACATAAGTGCAGAGCGGCATATATAATATACCTCCAAGGAAAGTGAAAATGTGGATTGATTATTGTTTAAACAGTTTTATGTTCGTCTTTACAGTTTCATATTACCCCTGGACTGA]
[+] EMBL BM588412             [         ccgaacGAAACTGCAAATAATTTCATCAGCAGAACCGTACAATCTGTGTTAAATAGTTATTTTAATAGAAAACTCCACAAACTCCTCGCTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTGAAAACGAGCGTGCTAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTTGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTAAATACATAAGTGCAGAGCGGCATATATAATATACCTCCAAGGAAAGTGAAAATGTG                                                               ]




>consensus_7994#0
CCGCCCACGCGTCCGGAAACTGCAAATAATTTCATCAGCAGAACCGTACAATCTGTGTTA
AATAGTTATTTTAATAGAAAACTCCACAAACTCCTCGCTCTGCAGCCATGTCTAGCTTCG
GAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTG
AAAACGAGCGTGCTAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACA
AGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATT
GTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTTGCCCAGAGCCTAC
AGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCA
TTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTA
AATACATAAGTGCAGAGCGGCATATATAATATACCTCCAAGGAAAGTGAAAATGTGGATT
GATTATTGTTTAAACAGTTTTATGTTCGTCTTTACAGTTTCATATTACCCCTGGACTGA

consensusID : consensus_7994#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [CCGCCCACGCGTCCGCTGCGTTAAATAGTTATTTTCATAGAAAACTCCACAAATTACTCGCTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTGAAAACGAGCGTGCCAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTCGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTAAATACATAAGTGCAGAGCGGCATATATAATGTACCTCCAAGGAAAGTGAAAATGTGGATTGATTATTGTTTAAACAGTTT]

[+] EMBL BM595920             [CCGCCCACGCGTCCGCTGCGTTAAATAGTTATTTTCATAGAAAACTCCACAAATTACTCGCTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTGAAAACGAGCGTGCCAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTCGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTAAATACATAAGTGCAGAGCGGCATATATAATGTACCTCCAAGGAAAGTGAAAATGTGGATTGATTATTGTTTAAACAGTTT]




>consensus_7994#1
CCGCCCACGCGTCCGCTGCGTTAAATAGTTATTTTCATAGAAAACTCCACAAATTACTCG
CTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGA
GTTGCAGGACTTCCTGATGGCTGAAAACGAGCGTGCCAGGCTTAGCGCACAGATCCACGA
GTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCG
GACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCAC
GCAGCGTTTCGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGG
GGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTT
AATCATACCATTCTGTTCTGTTAAATACATAAGTGCAGAGCGGCATATATAATGTACCTC
CAAGGAAAGTGAAAATGTGGATTGATTATTGTTTAAACAGTTT

consensusID : consensus_7994#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 520
fasta sequence

                              [CCGCTGGTGAAACGAAACTGCAAATAATTTCATCAGCAGAACTATACAATCTGCGTTAAATAGTTATTTTCATAGAAAACTCCACAAATTACTCGCTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTGAAAACGAGCGTGCCAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTCGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTAAATACATAAGTGCAGAGCGGCATATATAATGTACCTCCAAGG]

[+] EMBL BM656342             [CCGCTGGTGAAACGAAACTGCAAATAATTTCATCAGCAGAACTATACAATCTGCGTTAAATAGTTATTTTCATAGAAAACTCCACAAATTACTCGCTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTGAAAACGAGCGTGCCAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTCGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTAAATACATAAGTGCAGAGCGGCATATATAATGTACCTCC    ]
[+] EMBL BM581370             [   ccGGTGAAACGAAACTGCAAATAATTTCATCAGCAGAACTATACAATCTGCGTTAAATAGTTATTTTCATAGAAAACTCCACAAATTACTCGCTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTGAAAACGAGCGTGCCAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTCGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTAAATAC                                     ]
[+] EMBL BM647250             [        ccgACGAAACTGCAAATAATTTCATCAGCAGAACTATACAATCTGCGTTAAATAGTTATTTTCATAGAAAACTCCACAAATTACTCGCTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTGAAAACGAGCGTGCCAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTCGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGCGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAG                                                                         ]
[+] EMBL BM577793             [                   ccgAATAATTTCATCAGCAGAACTATACAATCTGCGTTAAATAGTTATTTTCATAGAAAACTCCACAAATTACTCGCTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTTCTGATGGCTGAAAACGAGCGCGCCCGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGTACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTCGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTAAATACATAAGTGCAGAACGGCATATATAATTTACCTCCAAGG]
[+] EMBL BM600677             [                   ccgAATAATTTCATCAGCAGAACTATACAATCTGCGTTAAATAGTTATTTTCATAGAAAACTCCACAAATTACTCGCTCTGCAGCCATGTCTAGCTTCGGAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTTCTGATGGCTGAAAACGAGCGCGCCCGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGTACGGAAACGTGCTTGGCGAATTGTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTCGCCCAGAGCCTACAGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCATTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTAAATACA                                    ]




>consensus_7994#2
CCGCTGGTGAAACGAAACTGCAAATAATTTCATCAGCAGAACTATACAATCTGCGTTAAA
TAGTTATTTTCATAGAAAACTCCACAAATTACTCGCTCTGCAGCCATGTCTAGCTTCGGA
AGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTGAA
AACGAGCGTGCCAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACAAG
TGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATTGT
GTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTCGCCCAGAGCCTACAG
AAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCATT
TTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTAAA
TACATAAGTGCAGAGCGGCATATATAATGTACCTCCAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7994#0      CCGCCCACGCGTCCGGAAACTGCAAATAATTTCATCAGCAGAACCGTACAATCTGTGTTA 60
consensus_7994#1      -----------------------------------CCGCCCACGCGTCCG--CTGCGTTA 23
consensus_7994#2      --CCGCTGGTGAAACGAAACTGCAAATAATTTCATCAGCAGAACTATACAATCTGCGTTA 58
                                                         * **  *    * *   *** ****

consensus_7994#0      AATAGTTATTTTAATAGAAAACTCCACAAACTCCTCGCTCTGCAGCCATGTCTAGCTTCG 120
consensus_7994#1      AATAGTTATTTTCATAGAAAACTCCACAAATTACTCGCTCTGCAGCCATGTCTAGCTTCG 83
consensus_7994#2      AATAGTTATTTTCATAGAAAACTCCACAAATTACTCGCTCTGCAGCCATGTCTAGCTTCG 118
                      ************ ***************** * ***************************

consensus_7994#0      GAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTG 180
consensus_7994#1      GAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTG 143
consensus_7994#2      GAAGTGCGGACACGCCGAAAGCAAACGTCGATCCTGAGTTGCAGGACTTCCTGATGGCTG 178
                      ************************************************************

consensus_7994#0      AAAACGAGCGTGCTAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACA 240
consensus_7994#1      AAAACGAGCGTGCCAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACA 203
consensus_7994#2      AAAACGAGCGTGCCAGGCTTAGCGCACAGATCCACGAGTTCAATGATATCTGCTGGGACA 238
                      ************* **********************************************

consensus_7994#0      AGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATT 300
consensus_7994#1      AGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATT 263
consensus_7994#2      AGTGCGTGGAGAAGCCGAGCAACAAACTGGACAGCCGGACGGAAACGTGCTTGGCGAATT 298
                      ************************************************************

consensus_7994#0      GTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTTGCCCAGAGCCTAC 360
consensus_7994#1      GTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTCGCCCAGAGCCTAC 323
consensus_7994#2      GTGTGAACCGCTTCGTCGACACGTCGCTCCTGATCACGCAGCGTTTCGCCCAGAGCCTAC 358
                      ********************************************** *************

consensus_7994#0      AGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCA 420
consensus_7994#1      AGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCA 383
consensus_7994#2      AGAAGAGCCAGGGAATGTAAAGGGCTCTGGTTAGTGGGGTACCGTTTCAATGGGAACGCA 418
                      ************************************************************

consensus_7994#0      TTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTA 480
consensus_7994#1      TTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTA 443
consensus_7994#2      TTTTGGGATGTAGTTTTTAGTTTCAGCAGGGCCCTTTAATCATACCATTCTGTTCTGTTA 478
                      ************************************************************

consensus_7994#0      AATACATAAGTGCAGAGCGGCATATATAATATACCTCCAAGGAAAGTGAAAATGTGGATT 540
consensus_7994#1      AATACATAAGTGCAGAGCGGCATATATAATGTACCTCCAAGGAAAGTGAAAATGTGGATT 503
consensus_7994#2      AATACATAAGTGCAGAGCGGCATATATAATGTACCTCCAAGG------------------ 520
                      ****************************** ***********                  

consensus_7994#0      GATTATTGTTTAAACAGTTTTATGTTCGTCTTTACAGTTTCATATTACCCCTGGACTGA 599
consensus_7994#1      GATTATTGTTTAAACAGTTT--------------------------------------- 523
consensus_7994#2      -----------------------------------------------------------