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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1166 fasta sequence
[GTCATACAGTAAGACAAAATTATAGCCTTTTATTATCCAAACTTTAAGCTTTGATTGCGTGGAAGAACGCGTGCAAGCATGGTATTTGTTTTTTTTTTCTAAAGAAAGAATGTTGCTCTGTTGTCCCTTTCTCAAACCAGATTAAATGTTTTATTTATTTCCTTTG-TTCAGTGTATATAATTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGGCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTCACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAAAATGATGAACAGTGGCAACCAACAGCACACATACATACAGCGCAATGTCTCCATCCAGTTTA---TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGAAACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG-----AAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAAAATACCATTCAAAAACTTTGGTAGCAATTGATTGTTTTCTCTTATATAGCGCTGACTGATGCGTTGTTTAGGTAGTACATACACACACGTAGAGGTAATAACCTATTCCATCGTGTTTAATGTAGTTGCAGCT-AAAAAAAAAGCAAAGAGAAATGCATTTCGAACCATTGTGCTGTTTGTTTGCTGAGTGCGCGAGAGTTTTCGTTTGCTCCTCTTCGCGAGCGTGTTTTCATGGTAGTTAAAATTCTAAGCTGTGCGCAAAACAT-AAATGAACAAGACGACCAGATAGAGAGAGAACCGAAACC-ATCATGCNAAGCCTCGAGATCATCTCCGTACGCAGAGAGGTTCGCTAAACACCTGCTAATAAGATGTTAGTAAGTAAGCGGAATGGAGATGTGTGTAATTCGTACTAGGTAAACTTACACCATACGGTAATGTCAAAGGGCGCGTGGAGACATATACACGGGATGCGGATAAAGTAAAACAAAATATACACAAACCAACAAATCTG]
[+] EMBL BX621951 [GTCATACAGTAAGACAAAATTATAGCCTTTTATTATCCAAACTTTAAGCTTTGATTGCGTGGAAGAACGCGTGCAAGCATGGTATTTGTTTTTTTTTTCTAAAGAAAGAATGTTGCTCTGTTGTCCCTTTCTCAAACCAGATTAAATGTTTTATTTATTTCCTTTGTTTCAGTGTATATAATTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGTCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTAACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAACAAGATGAACAGTGGCAACCAACAGCACACATACATACAGCGTAATGTCTCCATCCAGTTTAGTGTGAGTGTGCATCCTAGGCATGTATCATATTTGCAAGTAAACATTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAACAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAGAAAGAAAAAAAAACGGTTAGGAAAAATAATCATTACAACATTTCTCAACTTCGAATACAAAAATACCATTCAAAAACTTTGGTAGCAATTGATTGGTTTCTCTTATATAGCGCTGACTGATGCGTTGTTTANGTAGTACATACACACACGTAGANGTAATAACATATTTCATCGGGGTTAATGTAGTTGCAGCT ]
[+] EMBL BX621745 [ aggTGATTGCGTGGAAGAACGCGTGCAAGCATGGTATTTGTTTTTTTTTTCTAAAGAAAGAATGTTGCTCTGTTGTCCCTTTCTCAAACCANATTANATGTTTTATTTATTTCCTTTG TNCNGTGTATATAATTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGTCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTAACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAACAAGATGAACAGTGGCAACCAACAGCACACATACATACAGCGTAATGTCTCCNTCCAGTTTAGTGTGAGTGTGCATCCTANGCATGTATCATATTTGCAAGTAAACATTTTCAAAGCTCAAGGCGCGACAGCNATGCATAGCAAACACACACACATAAGCAANCAGNGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG AAAGAAAA ]
[+] EMBL BX610196 [ GAATGTTGCTCTGTTGTCCCTTTCTCAAACCAGATTAAATGTTTTATTTATTTCCTTTG TTCAGTGTATATAATTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGGCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTCACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAAAATGATGAACAGTGGCAACCAACAGCACACATACATACAGCGCAATGTCTCCATCCAGTTTA TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGAAACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG AAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAAAATACCATTCAAAAACTTTGGTAGCAATTGATTGTTTTCTCTTATATAGCGCTGACTGATGCGTTGTTTAGGTAGTACATACACACACGTAGAGGTAATAACCTATTCCATCGTG ]
[+] EMBL BX625539 [ CTGCGTCGCGTGGCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTCACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAAAATGATGAACAGTGGCAACCAACAGCACACATACATACAGCGCAATGTCTCCATCCAGTTTA TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGAAACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG AAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAAAATACCATTCAAAAACTTTGGTAGCAATTGATTGTTTTCTCTTATATAGCGCTGACTGATGCGTTGTTTAGGTAGTACATACACACACGTAGAGGTAATAACCTATTCCATCGTGTTTAATGTAGTTGCAGCTAAAAAAAAAAGCAAAGAGAAATGCATTTCGAACCATTGTGCTGTTTGTTTGCTGAGTGCGCGAGAGTTTTCGTTTGCTCCTCTTCGCGAGCGTGTTTTCATGGTAGTTAAAATTCTAAGCTGTGCGCAAAACAT AAATGAACAAGACGACCAGATAGAGAGAGAACCGAAACC ATCATGCNAAGCCTCGAGATCATCTCCG ]
[+] EMBL BX614291 [ GGCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTCACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAAAATGATGAACAGTGGCAACCAACAGCACACATACATACAGCGCAATGTCTCCATCCAGTTTA TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGAAACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG AAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAAAATACCATTCAAAAACTTTGGTAGCAATTGATTGTTTTCTCTTATATAGCGCTGACTGATGCGTTGTTTAGGTAGTACATACACACACGTAGAGGTAATAACCTATTCCATCGTGTTTAATGTAGTTGCAGCT AAAAAAAAAGCAAAGAGAAATGCATTTCGAACCATTGTGCTGTTTGTTTGCTGAGTGCGCGAGAGTTT ]
[+] EMBL BX618391 [ CTCCATCCAGTTTA TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGAAACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATC ]
[+] EMBL BX611122 [ GCAAGCAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAG AAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAA ]
[+] EMBL BM591796 [ ccgAGTTAAAATTCTAAGCTGTGCGCAAAACATAAAATGAACAAGACGACAAGATAGAGAGAGAACAGAAACCAATCATGCAAAGCCTCGAGATCATCTCCGTACGCAGAGAGGTTCGCTAAACACCTGCTAATAAGATGTTAGTAAGTAAGCGGAATGGAGATGTGTGTAATTCGTACTAGGTAAACTTACACCATACGGTAATGTCAAAGGGCGCGTGGAGACATATACACGGGATGCGGATAAAGTAAAACAAAATATACACAAACCAACAAATCTG]
consensusID : consensus_8055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence
[TATATAACTTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGTCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTAACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAACAAGATGAACAGTGGCAACCAACAGCACACATACATACAGCGTAATGTCTCCATCCAGTTTAGTGTGAGTGTGCATCCTAGGCATGTATCATATTTGCAAGTAAACATTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAACAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAGAAAGAAAAGAAAAACGGTTAGGAAAAAATNCAACAAAAAGCAGCATGTG]
[-] EMBL BX466831 [TATATAACTTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTGCAACACTGCGTCGCGTGTCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGGAACTGTTCTAACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAGAAGCACCAGCAGGGAAACAAGATGAACAGTGGCAACCAACAGCACACATACATACAGCGTAATGTCTCCATCCAGTTTAGTGTGAGTGTGCATCCTAGGCATGTATCATATTTGCAAGTAAACATTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAACAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAACAAGAAAGAAAAGAAAAACGGTTAGGAAAAAATNCAACAAAAAGCAGCATGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8055#0 GTCATACAGTAAGACAAAATTATAGCCTTTTATTATCCAAACTTTAAGCTTTGATTGCGT 60
consensus_8055#1 ------------------------------------------------------------
consensus_8055#0 GGAAGAACGCGTGCAAGCATGGTATTTGTTTTTTTTTTCTAAAGAAAGAATGTTGCTCTG 120
consensus_8055#1 ------------------------------------------------------------
consensus_8055#0 TTGTCCCTTTCTCAAACCAGATTAAATGTTTTATTTATTTCCTTTGTTCAGTGTATATAA 180
consensus_8055#1 -----------------------------------------------------TATATAA 7
*******
consensus_8055#0 -TTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTG 239
consensus_8055#1 CTTAACTGGTATAACAAACACACACACAACAGCTGCTGTATGTAAAGAGTAAACGAAGTG 67
***********************************************************
consensus_8055#0 CAACACTGCGTCGCGTGGCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGG 299
consensus_8055#1 CAACACTGCGTCGCGTGTCACTAACTCTAGTTGATAGGAAAGCGAAAGGAGATTTGTTGG 127
***************** ******************************************
consensus_8055#0 AACTGTTCTCACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAG 359
consensus_8055#1 AACTGTTCTAACACAGAGTGCAGTTACGAATAGAATCAATTGCAATGTAAAGTTGTAAAG 187
********* **************************************************
consensus_8055#0 AAGCACCAGCAGGGAAAAATGATGAACAGTGGCAACCAACAGCACACATACATACAGCGC 419
consensus_8055#1 AAGCACCAGCAGGGAAACAAGATGAACAGTGGCAACCAACAGCACACATACATACAGCGT 247
***************** * ***************************************
consensus_8055#0 AATGTCTCCATCCAGTTTA---TGAGTGTGCATCCTAGGCATGTATCATATTTGCAAAGA 476
consensus_8055#1 AATGTCTCCATCCAGTTTAGTGTGAGTGTGCATCCTAGGCATGTATCATATTTGCAAGTA 307
******************* *********************************** *
consensus_8055#0 AACGTTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAG 536
consensus_8055#1 AACATTTTCAAAGCTCAAGGCGCGACAGCAATGCATAGCAAACACACACACATAAGCAAA 367
*** *******************************************************
consensus_8055#0 CAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAAC 596
consensus_8055#1 CAGTGAACGTAACTAGAGCGTAATCAAATAATTCAGCCTAATAGCAGGAAATCAAGCAAC 427
************************************************************
consensus_8055#0 AAGAAAAAAAACGGTTAGGAAAAATAATCATTAAAACATTTCTCAACTTCGAATACAAAA 656
consensus_8055#1 AAGAAAGAAAA-------GAAAAACGGTTAGGAAAAAATNCAACAAAAAGCAGCATGTG- 479
****** **** ****** * * **** ** *** * *
consensus_8055#0 ATACCATTCAAAAACTTTGGTAGCAATTGATTGTTTTCTCTTATATAGCGCTGACTGATG 716
consensus_8055#1 ------------------------------------------------------------
consensus_8055#0 CGTTGTTTAGGTAGTACATACACACACGTAGAGGTAATAACCTATTCCATCGTGTTTAAT 776
consensus_8055#1 ------------------------------------------------------------
consensus_8055#0 GTAGTTGCAGCTAAAAAAAAAGCAAAGAGAAATGCATTTCGAACCATTGTGCTGTTTGTT 836
consensus_8055#1 ------------------------------------------------------------
consensus_8055#0 TGCTGAGTGCGCGAGAGTTTTCGTTTGCTCCTCTTCGCGAGCGTGTTTTCATGGTAGTTA 896
consensus_8055#1 ------------------------------------------------------------
consensus_8055#0 AAATTCTAAGCTGTGCGCAAAACATAAATGAACAAGACGACCAGATAGAGAGAGAACCGA 956
consensus_8055#1 ------------------------------------------------------------
consensus_8055#0 AACCATCATGCNAAGCCTCGAGATCATCTCCGTACGCAGAGAGGTTCGCTAAACACCTGC 1016
consensus_8055#1 ------------------------------------------------------------
consensus_8055#0 TAATAAGATGTTAGTAAGTAAGCGGAATGGAGATGTGTGTAATTCGTACTAGGTAAACTT 1076
consensus_8055#1 ------------------------------------------------------------
consensus_8055#0 ACACCATACGGTAATGTCAAAGGGCGCGTGGAGACATATACACGGGATGCGGATAAAGTA 1136
consensus_8055#1 ------------------------------------------------------------
consensus_8055#0 AAACAAAATATACACAAACCAACAAATCTG 1166
consensus_8055#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||