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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1501 fasta sequence
[CCGCTGCAAAACAATATCAAAACATTACGTGCCCAAAATCACACACC-AATAAAAAAAATATCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGC-CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAAAGAGAGAGTGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA-TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC-AAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG-CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCTGTCCCACTGCCACTGGCTCACGATCGGGGCGATGGAGGCGCTGACGCTGCACCACACCAAACTGCAGGAGCTGGACGTGTCGCACTGTGCCGCGCTGAACGAGCGCTGCATCTCGGTGTTTCTGCTCAGCTGCCGCATGCTGAAGACGCTCTCCCTATAAAAAGTGCACGCGGTCACGGACAATTTGCTGTTTGCGATAGCGAAGCATTCAAAATTCATCAAAAACCTTAACCTAGTCGGTTGTTACCTTATTACGGATCGGGGTGTTTTAGCGCTTGCCTTTTGCTGTAAGGAGCTGGAATCGCTTATGGTGCGCGAGTGTCCCCATGTGACGGAGCGAAGCCTGGCGGTGCTGCGCGGCCGTGTATTCATCGACC-GACCGCGCGTCTACCAGCAGGACATGAACATGGTGCCGAACATGGGCTTCCCTCGGATGTTTCTGCAGGTCTGATTTGGTGGCCCAGCCACCGTTTCCCCCCGCTTCCCGCGCTTCTCCCCACTTAGGTCACCCGCCCTCCCCGCGGGATTCGTTACGCAAGCCATAACTGGGATAATATTTTACGGATAATACATGGAAAAAGGGTGTGATAGTTATCGTAATAGTTAACAAACGTGACATACAATGGAGCACGGAGCGCTGTAAATAATAGTGCGTAGCGCGCACACACAAACACACACAGACACATATATATACAGGAGACATACCTATAGGCTATACTTACCACGCTATATATGTACCATTTATCTTGTTGTATACATACAGGGTCGTAAATTTAAATTAAAAGAAAAACTAAATACACATAATTTATTTGATTTCGTCTTATCGGCAAAATCGACGACT]
[+] EMBL BM586774 [CCGCTGCAAAACAATATCAAAACATTACGTGCCCAAAATCACACACC AATAAAAAAAATATCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGC CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAAAGAGAGAGTGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC AAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTC ]
[+] EMBL BM656565 [ ccgAAACAATATCAAAACATTACGTGCCCAAAATCACACACC AATAAAAAAAATATCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGC CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAGAGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC AAAACCTTCGTCGACAATGGACTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGA ]
[+] EMBL BX627870 [ AATCACACACCAAAAAAAAAAAATATCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGC CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGACAG AGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC AAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCTGTCCCACTGCCACTGGCTCACGATCGGGGCGATGGANGCGCTGACGCTGCACCACACCAAACTGCANGAGCTGGACGTGTCNCACTGTGCCGCGCTGAACGAGCGCTGCATCTCGGNGTTTCTGCTCAGCTGCCGCATGCTGAAAACct ]
[+] EMBL CNS0991I [ ccatAAAATATCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAA GCATATTGCAAATGCTGC CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAAAGAGAGAGTGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGAGTGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC AAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCTGTCCCACTGCCACTGGCTCACGATCGGGGCGATGGAGGCGCTGACGCTGCACCACACCAAACTGCAGGAGCTGGACGTGTCGCACTGTGCCGCGCTGAACGAGCGCTGCATCTCGGTGTTTCTGCTCAGCTGCCGCATGCTGAAGACGCTCTCCCTATAAAAAGTGCA ]
[+] EMBL BX619748 [ ATTCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGCGCCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAAAGAGAGAGTGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC AAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCTG ]
[+] EMBL BX625448 [ GCCGTGTGAAACGCATATTGCAAATGCTGC CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGACAG AGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCCAAAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCGCCCCCACCTCGACC ]
[+] EMBL BX612046 [ TGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCTGTCCCACTGCCACTGGCTCACGATCGGGGCGATGGAGGCGCTGACGCTGCACCACACCAAACTGCAGGAGCTGGACGTGTCGCACTGTGCCGCGCTGAACGAGCGCTGCATCTCGGTGTTTCTGCTCAGCTGCCGCATGCTGAAGACGCTCTCCCTGTCCAACGTGCCCGCGGTCACGGACAATTTGCTGTTTGCGATAGCGAAGCATTCAAAATTCATCAAAAACCTTAACCTAGTCGGTTGTTACCTTATTACGGATCGGGGTGTTTTAGCGCTTGCCTTTTGCTGTAAGGAGCTGGAATCGCTTATGGTGCGCGAGTGTCCCCATGTGACGGAGCGAAGCCTGGCGGTGCTGCGCGGCCGTGTATTCATCGACC GACCGCGCGTCTACCAGCAGGACATGAACATGGTGCCGAACATGGGCTTCCCTCGGATGTTTCTGCAGGTCTGATTTGGTGGCCCAGCCACCGTTTCCCCCCGCTTCCCGCGCTTCTCCCCACTTAGGTCACCCGCCCTCCCCGCGGGATTCGTTACGCAAGCCATAACTGGGATAATATTTTACGGATAATACATGGAAAAAGGGTGTGATAGTTATCGTAATAGTTAACAAACGTGACATACAATGG ]
[-] EMBL CNS0991J [ TGTTTTAGAGCTTGCCTTTTGCTGTAAGGAGCTGGAATCGCTTATGGTGCGCGAGTGTCCCCATGTGACGGAGCGAAGCCTGGCGGTG TGCGCGGCCGTGTATTCATCGACCGGACCGCGCGTCTACCAGCAGGACATGAACATGGTGCCGAACATGGGCTTCCCCCGGATGTTTCTGCAGGTCTGATTT GTGGCCCAGCCACCGTTTCCCCCCGCTTCCCGCGCTTCTCCCCACTTAGGTCACCCGCCCTCCCCGCGGGATTCGTTACGCAAGCCATAACTGGGATAATATTTTACGGATAATACATGGAAAAAGGGTGTGATAGTTATCGTAATAGTTAACAAACGTGACATACAATGGAGCACGGAGCGCTGTAAATAATAGTGCGTAGCGCGCACACACAAACACACACAGACACATATATATACAGGAGACATACCTATAGGCTATACTTACCACGCTATATATGTACCATTTATCTTGTTGTATACATACAGGGTCGTAAATTTAAATTAAAAGAAAAACTAAATACACATAATTTATTTGATTTCGTCTTATCGGCAAAATCGACGACT]
consensusID : consensus_8077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[AATCGCCCGAGGNNAAATATCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATTTTGCAAATGCTGCCCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAGAGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGATGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCCAAAACCTTCGTCGACAATGGACTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCGCCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTG]
[+] EMBL AL931092 [AATCGCCCGAGGNNAAATATCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATTTTGCAAATGCTGCCCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAGAGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGATGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCCAAAACCTTCGTCGACAATGGACTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCGCCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8077#0 CCGCTGCAAAACAATATCAAAACATTACGTGCCCAAAATCACACACCAATAAAAAAAATA 60
consensus_8077#1 ------------------------------------AATCGCCCG-----AGGNNAAATA 19
**** * * * *****
consensus_8077#0 TCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGCCCCA 120
consensus_8077#1 TC-AACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATTTTGCAAATGCTGCCCCA 78
** *************************************** *****************
consensus_8077#0 GGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGA 180
consensus_8077#1 GGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGA 138
************************************************************
consensus_8077#0 AAGAGAGAGTGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGATGTGCACCAAT 240
consensus_8077#1 GAGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGATGTGCACCAAT 198
******** **************************************************
consensus_8077#0 GGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGA 300
consensus_8077#1 GGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGA 258
************************************************************
consensus_8077#0 CGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTG 360
consensus_8077#1 CGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTG 318
************************************************************
consensus_8077#0 CTGCTCGCACCTGGCCAAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAA 420
consensus_8077#1 CTGCTCGCACCTGGCCAAAACCTTCGTCGACAATGGACTGCGTCGGCTGCAGGAGATCAA 378
************************************ ***********************
consensus_8077#0 CCTGTCCGGGAACAACTCGCCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTG 480
consensus_8077#1 CCTGTCCGGGAACAACTCGCCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTG 438
************************************************************
consensus_8077#0 CCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTG 540
consensus_8077#1 CCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTG 498
************************************************************
consensus_8077#0 CCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACAT 600
consensus_8077#1 CCCGCTGCTCAAGCACAACCGCCGGCTG-------------------------------- 526
****************************
consensus_8077#0 CACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCT 660
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 GTCCCACTGCCACTGGCTCACGATCGGGGCGATGGAGGCGCTGACGCTGCACCACACCAA 720
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 ACTGCAGGAGCTGGACGTGTCGCACTGTGCCGCGCTGAACGAGCGCTGCATCTCGGTGTT 780
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 TCTGCTCAGCTGCCGCATGCTGAAGACGCTCTCCCTATAAAAAGTGCACGCGGTCACGGA 840
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 CAATTTGCTGTTTGCGATAGCGAAGCATTCAAAATTCATCAAAAACCTTAACCTAGTCGG 900
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 TTGTTACCTTATTACGGATCGGGGTGTTTTAGCGCTTGCCTTTTGCTGTAAGGAGCTGGA 960
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 ATCGCTTATGGTGCGCGAGTGTCCCCATGTGACGGAGCGAAGCCTGGCGGTGCTGCGCGG 1020
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 CCGTGTATTCATCGACCGACCGCGCGTCTACCAGCAGGACATGAACATGGTGCCGAACAT 1080
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 GGGCTTCCCTCGGATGTTTCTGCAGGTCTGATTTGGTGGCCCAGCCACCGTTTCCCCCCG 1140
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 CTTCCCGCGCTTCTCCCCACTTAGGTCACCCGCCCTCCCCGCGGGATTCGTTACGCAAGC 1200
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 CATAACTGGGATAATATTTTACGGATAATACATGGAAAAAGGGTGTGATAGTTATCGTAA 1260
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 TAGTTAACAAACGTGACATACAATGGAGCACGGAGCGCTGTAAATAATAGTGCGTAGCGC 1320
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 GCACACACAAACACACACAGACACATATATATACAGGAGACATACCTATAGGCTATACTT 1380
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 ACCACGCTATATATGTACCATTTATCTTGTTGTATACATACAGGGTCGTAAATTTAAATT 1440
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 AAAAGAAAAACTAAATACACATAATTTATTTGATTTCGTCTTATCGGCAAAATCGACGAC 1500
consensus_8077#1 ------------------------------------------------------------
consensus_8077#0 T 1501
consensus_8077#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||