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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 899 fasta sequence
[CAGAATCGCGCACGAGGCCAAACGATAGACAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC-AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGGCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGCCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTTAACCAGCCCGCCTCGAACCCGACGACTGCTAACCCCGCGAAGAAGGTTTAAATCACA-CAAAAGTGGAACTGAACGAATCGAATCGATGATCGATAATTTGTGAAGAATGTGTTTAAACTCTATTTACACAATGTG-TTTTCTATTTACAACAACAATCCAAATTAAANCACCACCGTTTAATTTTGCAAATCCCAATGTTACAAAACANAACAACANAAACCGGACATTTTTTGCGGGCCACAAGCCTTATTCCCCTTTTAATGAGGNTTAATTTAAACCTTGACCATTGCCCATCGTT]
[+] EMBL BX467890 [CAGAATCGCGCACGAGGTCAAACGATAGACAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCACAAAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGGCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGCCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTTAACCAGCCCGCCTCGAACCCGACGACTGCTAACCCCGCGAAGAAGGTTTAAATCACAGCAAAAGTGGAACTGAACGAATCGAATCGATGATCGATAATTTGTGAAGAATGTGTTTAAACTCTATTTACACAATGTG TTTTCTATTTACAACAACAATCCAAATTAAANCACCACCGTTTAATTTTGCAAATCCCAATGTTACAAAACANAACAACANAAACCGGACATTTTTTGCGGGCCACAAGCCTTATTCCCCTTTTAATGAGGNTTAATTTAAACCTTGACCATTGCCCATCGTT]
[+] EMBL BM644088 [ ccgctCCAAACGATAGACAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGGCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGCCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTTAACCAGCCCGCCTCGAACCCGACGACTGCTAACCCCGCGAAGAAGGTTTAAATCACA CAAAAGTGGAACTGAACGAATCGAATCGATGATCGATAATTTGTG ]
[+] EMBL BM621569 [ ccgAAACGATAGACAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGGCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGCCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTT ]
[+] EMBL BM614456 [ ccgCGATAGACAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGGCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGGCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCTAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGGATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTTAACCAGCCCGCCTCGAACCCGACGA ]
[+] EMBL BX613911 [ CAATGAAGACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAAAACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGG ]
[+] EMBL BX613912 [ GACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCAGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCAACAAAACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGCACCCCAC AAGTATAAGCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGCTGCACCGAAGTCAACCGTCGATCCGAAACAGCCGTCCGTGCTGCCGGCCATCATCGGACAGGCCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCTCCGCGTCCTACTGCAAACAAGCAG ]
[+] EMBL BM644837 [ ccgGGAGCTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCTTCCTACTGCAAACAAGCAGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTACCGGCTACCGTTAACCAGCCCGCCTCGAACCCGACGACTGCTAACCCCGCGAAGAAGGTTTAAATCACA CAAAAGTGGAACTGAACGAATCGAATCGATGATCGATAATTTGTGAAG ATGTGTTTTTTTTTTATTTACACAATGTGTTTTTCTATT AAAAAAAAT CAAA TAAA CA CA CG TTAA TTTGC AAT CCAATGT ]
consensusID : consensus_8078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence
[CCCGGTTATTCCACGATAGAAATNCAAGATTTTGATTTTTGTATGTGTGCGGCATCGCTCTGGTTGCTGGCGAGGTAAAAGGGTCCAGCCACCATCANGATGTTAGCAGAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGACGACAGCACCAACAACACAACAAAGAGCACCAGCATCTCAGCAGACTCGCTGAAGCAAAACCAGAGACCAACAGCACAGCGGACCCACAAGTATAATCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACAACGTGACCGAAGGCAACCGTCTGATCCGAAAAGCCGTCCGTGCTTGCGGCATCATCGGACAGGGCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCGCTGCTGCCCGCCATCCACAATGCTCACCAAAGGCGCTGCTGCAGGAGCTACCAACAAGGGCAGCAGCGTAAAAACCAGTNCCGCCCGCGTCCTACTGAAACAAGGCAGCAGAGAGCCGTGATCAGGCTCGAACAAGCCCAAACGAATGGAAAATGCAAAGGTACCGGCTACGTTAACCAGCCGGCTCGAACCCGATGATTGTAACCCGGAAGAAGTTAAATCACACCACAGTGGATGAAGGATTCGATCGAGATCGNTATTGGGAACNGTNTTNTACACACTGGTTTTCTATAAACAAATCAATACACACGTTTTGCGTCATGTAAAAAAAAAAACAGTTTGGGNAGTTCTAAGNGG]
[+] EMBL AL930944 [CCCGGTTATTCCACGATAGAAATNCAAGATTTTGATTTTTGTATGTGTGCGGCATCGCTCTGGTTGCTGGCGAGGTAAAAGGGTCCAGCCACCATCANGATGTTAGCAGAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGACGACAGCACCAACAACACAACAAAGAGCACCAGCATCTCAGCAGACTCGCTGAAGCAAAACCAGAGACCAACAGCACAGCGGACCCACAAGTATAATCGTGAAGCACCAAAGGACTCGGCTGCGGGACATTCGACAACGTGACCGAAGGCAACCGTCTGATCCGAAAAGCCGTCCGTGCTTGCGGCATCATCGGACAGGGCCCGAAAAACAAGCGTGACACTGTAGCTGCTCAGCCAGCGCTGCTGCCCGCCATCCACAATGCTCACCAAAGGCGCTGCTGCAGGAGCTACCAACAAGGGCAGCAGCGTAAAAACCAGTNCCGCCCGCGTCCTACTGAAACAAGGCAGCAGAGAGCCGTGATCAGGCTCGAACAAGCCCAAACGAATGGAAAATGCAAAGGTACCGGCTACGTTAACCAGCCGGCTCGAACCCGATGATTGTAACCCGGAAGAAGTTAAATCACACCACAGTGGATGAAGGATTCGATCGAGATCGNTATTGGGAACNGTNTTNTACACACTGGTTTTCTATAAACAAATCAATACACACGTTTTGCGTCATGTAAAAAAAAAAACAGTTTGGGNAGTTCTAAGNGG]
consensusID : consensus_8078#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[CAGAATCGGCACGAGGGTACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCATGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCGAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGACCCCGACGAAGTATAAAGCGTGAAGGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGNCTGCACCGAAGGCAACCGTCGATCCGAAACAGACGTCCGTGCTGCCGGGCATCATCGGACAGGCCCCGAATAGAACAAGCGTGAACACTTGTAGGCTTGNCATCCAGGGCAGGCCAGCACGCGTGGCCCGGCCCCNAGTCGCAGCNCAAAGTGGCCTTCCCAACCCAAAATAGGCCCAGGACTTTAGCTTGGCCAAGGAGAAAGCCGTAACCAAGCGCAAAGCNGGGNCCAAGACAAGGCCGGTTAAAGAAAGCNCGCGANGATCACGCAGCACGCGGNCGGTCCATAACGTTGGCGTCAAAAGCCAANGG]
[+] EMBL BX468689 [CAGAATCGGCACGAGGGTACTTTCATGATTTTGGTACTGTGTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATGTTAAGCATGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCGAACAACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCACCAACAGCCACAGCCGGACCCCGACGAAGTATAAAGCGTGAAGGCACCAAAGGACTCGGCTGCGGGACATTCGACCACCGNCTGCACCGAAGGCAACCGTCGATCCGAAACAGACGTCCGTGCTGCCGGGCATCATCGGACAGGCCCCGAATAGAACAAGCGTGAACACTTGTAGGCTTGNCATCCAGGGCAGGCCAGCACGCGTGGCCCGGCCCCNAGTCGCAGCNCAAAGTGGCCTTCCCAACCCAAAATAGGCCCAGGACTTTAGCTTGGCCAAGGAGAAAGCCGTAACCAAGCGCAAAGCNGGGNCCAAGACAAGGCCGGTTAAAGAAAGCNCGCGANGATCACGCAGCACGCGGNCGGTCCATAACGTTGGCGTCAAAAGCCAANGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8078#0 CAGAATCGCGCACGAGGCCAAACGATAGACAATGAAG-ACTTTCATGATTTTGGTACTGT 59
consensus_8078#1 ---------CCCGGTTATTCCACGATAGAAATNCAAG-ATTTT---GATTTTTGTA-TGT 46
consensus_8078#2 --------------------CAGAATCGGCACGAGGGTACTTTCATGATTTTGGTACTGT 40
* ** * * * * *** ****** *** ***
consensus_8078#0 GTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATG 119
consensus_8078#1 GTGCGGCA-TCGCTCTGGTTGCTGGCGAGG--TAAAAGGGTCCAGCCACC-ATCANGATG 102
consensus_8078#2 GTGCGGCAATCGCTCTGGTTGCTGCCGAGGATAAGAAGGGTCCAGCCACCCATCACGATG 100
******** *************** ***** * *************** **** ****
consensus_8078#0 TTAAGCA-GCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACC-AACA 177
consensus_8078#1 TTA-GCA-G-AGGAAAGCCACGCTCCGCAGCAGCCGAAGCAG-ACGAC-AGCACC-AACA 156
consensus_8078#2 TTAAGCATGCAGGAAAGCCACGCTCCGCAGCAGCCGAAGCAGCACGACCAGCACCGAACA 160
*** *** * ******************************** ***** ****** ****
consensus_8078#0 ACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCA 237
consensus_8078#1 ACACAACAAAGAGCA----CCAGCATCTCAGCAG-ACTCGCTGAAGCAAAACCAGAG--A 209
consensus_8078#2 ACACCAACAACAGCAGCACCCAGCATCTCAGCAGCACTCGCTGAAGCAAACCCAGCAGCA 220
**** * ** **** *************** *************** **** *
consensus_8078#0 CCAACAGCCACAGCCGGCACCCCAC-AAGTATAA-GCGTGAAG-CACCAAAGGACTCGGC 294
consensus_8078#1 CCAACAGC-ACAGCGGAC---CCAC-AAGTATAA-TCGTGAAG-CACCAAAGGACTCGGC 262
consensus_8078#2 CCAACAGCCACAGCCGGACCCCGACGAAGTATAAAGCGTGAAGGCACCAAAGGACTCGGC 280
******** ***** * * ** ******** ******* ****************
consensus_8078#0 TGCGGGACATTCGACCACCGC-TGCACCGAAGGCAACCGTC-GATCCGAAACAGCCGTCC 352
consensus_8078#1 TGCGGGACATTCGACAACG---TG-ACCGAAGGCAACCGTCTGATCCGAAA-AGCCGTCC 317
consensus_8078#2 TGCGGGACATTCGACCACCGNCTGCACCGAAGGCAACCGTC-GATCCGAAACAGACGTCC 339
*************** ** ** **************** ********* ** *****
consensus_8078#0 GTGCTGCCGGCCATCATCGGACAGGCCCCGAA--AAACAAGCGTGACACTGTAGCTGCTC 410
consensus_8078#1 GTGCTTGCGGC-ATCATCGGACAGGGCCCGAA--AAACAAGCGTGACACTGTAGCTGCTC 374
consensus_8078#2 GTGCTGCCGGGCATCATCGGACAGGCCCCGAATAGAACAAGCGTGA-ACACTTGTAGGCT 398
***** *** ************* ****** *********** ** * * *
consensus_8078#0 AGCCAGCCGCCGCTGCCCGCCCATCCACCAATGCTCCACCAAAGGCCGCTGCTGCAGGAG 470
consensus_8078#1 AGCCAGC-GCTGCTGCCCGCC-ATCCAC-AATGCTC-ACCAAAGGC-GCTGCTGCAGGAG 429
consensus_8078#2 TGNCATCCAGGGCAGGCCAGC-ACGCGT---GGCCCGGCCCCNAGTCGCAGCNCAAAGTG 454
* ** * ** * ** * * * ** * ** * ** ** * * *
consensus_8078#0 CTACCACCAACGGCCAGCAGCGTAAAACCCAGTCCGCCCCGCGTCCTACTGCAAACAAGC 530
consensus_8078#1 CTACCAACAAGGGC-AGCAGCGTAAAAACCAGTNCCGCCCGCGTCCTACTGAAACAAGGC 488
consensus_8078#2 GCCTTCCCAA----------CCCAAAA-----TAGGCCCAGGACTTTAGCTTGGCCAAGG 499
*** * **** * ** * ** * *
consensus_8078#0 AGCAGCAGAGCCGTGATCAGGCATCGAACAAGCCCCAAACGACTGGAAATGCAAAGGTAC 590
consensus_8078#1 AGCAG-AGAGCCGTGATCAGGC-TCGAACAAGCCCAAACGAATGGAAAATGCAAAGGTAC 546
consensus_8078#2 AG----AAAGCCGTAACCAAGCGCAAAGCNGGGNCCAAGACAAGGCCGGTTAAAGAAAGC 555
** * ****** * ** ** * * * * ** * * * ** *
consensus_8078#0 CGGCTACCGTTAACCAGCCCG-CCTCGAACCCGACGACTGCTAACCCCGCGAAGAAGGTT 649
consensus_8078#1 CGGCTAC-GTTAACCAGCC-G-GCTCGAACCCGATGATTG-TAACCCGG--AAGAAG--T 598
consensus_8078#2 NCGCGANGATCACGCAGCACGCGGNCGGTCCATAACGTTGGCGTCAAAAGCCAANGG--- 612
** * * * **** * ** ** * ** * * *
consensus_8078#0 TAAATCACACAAAAGTGGAACTGAACGAATCGAATCGATGATCGATAATTTGTGAAGAAT 709
consensus_8078#1 TAAATCACACCACAGTGGA--TGAAGGATTCGA-TCGA-GATCGNTA--TTGGGAACNGT 652
consensus_8078#2 ------------------------------------------------------------
consensus_8078#0 GTGTTTAAACTCTATTTACACAATGTGTTTTCTATTTACAACAACAATCCAAATTAAANC 769
consensus_8078#1 NT------------TNTACACACTG-GTTTTCTATAAA-----------CAAATCAATAC 688
consensus_8078#2 ------------------------------------------------------------
consensus_8078#0 ACCACCGTTTAATTTTGCAAATCCCAATGTTACAAAACANAACAACANAAACCGGACATT 829
consensus_8078#1 AC-AC------GTTTTGC----------GTCATGTAAAAAAAAAA-ACAGTTTGGGNAGT 730
consensus_8078#2 ------------------------------------------------------------
consensus_8078#0 TTTTGCGGGCCACAAGCCTTATTCCCCTTTTAATGAGGNTTAATTTAAACCTTGACCATT 889
consensus_8078#1 TCTAAGNGG--------------------------------------------------- 739
consensus_8078#2 ------------------------------------------------------------
consensus_8078#0 GCCCATCGTT 899
consensus_8078#1 ----------
consensus_8078#2 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||