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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1144 fasta sequence
[GCGCACATGCCTGCCTTTTNGTTGTATTTTTTTTCAATTAAACAGTATATATATTTCTTATAAGTTTTGGGTAAAAATATGCGCACTCCTACACCCTGCCTCAACTCAATCCCTCCTTTTATTGGCTTTCCAGCCACATCCCGTCCTGTGCTAGATCCTGTTAACCTTGTTCTAATACGCTCGAAGACCTGTCCATTTGTTCGCGTGTGTTCCTTACAATCCTATGACTTATGTTCCTATTTACAGTCACAAGGAAATGCCGGTCCAACCCATTCCGACGCATTATGTGGTATGAAGCAGATTGTTAAATGCCGAGTAGGACGATTCCAGATCGAACAGCAGCTGGCGAACCTGCGCCTCCGTTAGATCGTCGGACGCCTGCATCGTGTTCAGCGTGGCCAGCCAGTTCGAGACCTTCTCCTTGCCCTCGAAGTTGTCCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCGCAGCTCGGGCTGCAAATCATCCATCGCCCGTATCTCGAGCCGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA-A-TGGGACGGTCCTCCCT-GATGCGCTCCAGCGCAGCCGG-ACAGTCTAG-CCGGAACTTCTT-CACGAACGAGTCG-ATCGTCGGAAACTC-GTCGCCCTG-CACAATCTT--GAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATTTTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTTTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGAATAACCAAAAATAATAAATTTCACAGCACTGCGACGAAACTTTTGCATT]
[+] EMBL BX466710 [GCGCACATGCCTGCCTTTTNGTTGTATTTTTTTTCAATTAAACAGTATATATATTTCTTATAAGTTTTGGGTAAAAATATGCGCACTCCTACACCCTGCCTCAACTCAATCCCTCCTTTTATTGGCTTTCCAGCCACATCCCGTCCTGTGCTAGATCCTGTTAACCTTGTTCTAATACGCTCGAAGACCTGTCCATTTGTTCGCGTGTGTTCCTTACAATCCTATGACTTATGTTCCTATTTACAGTCACAAGGAAATGCCGGTCCAACCCATTCCGACGCATTATGTGGTATGAAGCAGATTGTTAAATGCCGAGTAGGACGATTCCAGATCGAACAGCAGCTGGCGAACCTGCGCCTCCGTTAGATCGTCGGACGCCTGCATCGTGTTCAGCGTGGCCAGCCAGTTCGAGACCTTCTCCTTGCCCTCGAAGTTGTCCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCGCAGCTCGGGCTGCAAATCATCCATCGCCCGTATCTCGAGCCGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTANACTGGGACGGTCCTCCCTGGATGCGCTCCAGCGCAGCCGGAACAGTCTAGCCCGGAACTTCTTCCACGAACGAGTCGAATCGTCGGAAACTCGGTCG CCTGACACAATCTTTGGAACGCAACCTTGTga ]
[-] EMBL BX612757 [ GGTAAAAATATGCGCACTCCTACACCCTGCCTCAACTCAATCCCTCCTTTTATTGGCTTTCCAGCCACATCCCGTCCTGTGCTAGATCCTGTTAACCTTGTTCTAATACGCTCGAAGACCTGTCCATTTGTTCGCGTGTGTTCCTTACAATCCTATGACTTATGTTCCTATTTACAGTCACAAGGAAATGCCGGTCCAACCCATTCCGACGCATTATGTGGTATGAAGCAGATTGTTAAATGCCGAGTAGGACGATTCCAGATCGAACAGCAGCTGGCGCACCTGTGCCTCCGTTAGATCGTCGGACGCCTGCATCGTGTTCAGCGTGGCCAGCCAGTTCGAGACCTTCTCCTTGCCCTCGAAGTTGTCCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCGCAGCTCGGGCTGC ATCATCCATCGCCCGTATCTCGAGCCGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA A TGGGACGGTCCTCCCT GATGCGCTCCAGCGCAGCCGG ACAGTCTAG CCGGAACTTCTT CACGAACGAGTCG ATCGTCGGAAACTC GTCGCCCTG CACAATCTT GAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTT ]
[-] EMBL BX615307 [ CGTGGCCAGCCAGTTCGAGACCTTCTCCTTGCCCTCGAAGTTGTCCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCGCAGCTCGGGCTGCAAATCATCCATCGCCCGTATCTCGAGCCGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA A TGGGACGGTCCTCCCT GATGCGCTCCAGCGCAGCCGG ACAGTCTAG CCGGAACTTCTT CACGAACGAGTCG ATCGTCGGAAACTC GTCGCCCTG CACAATCTT GAACGCCACCTAGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATTTTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGTCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGTGCGTTGTACAATTACTTCTCGGGTGTTGGGAGTTTCTTTGTACTTTGTGCTGCCTAGTTTTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAATGCAATTTGATCTCCGCGTGATGTAATCCGTT ]
[-] EMBL BX622648 [ CCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCGCAGCTCGGGCTGCAAATCATCCATCGCCCGTATCTCGAGCCGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA A TGGGACGGTCCTCCCT GATGCGCTCCAGCGCAGCCGG ACAGTCTAG CCGGAACTTCTT CACGAACGAGTCG ATCGTCGGAAACTC GTCGCCCTG CACAATCTT GAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATTTTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTTTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGAATAACCAAAAATAATAAATTTCACAGCACTGCGACGAAACTTTTGCATT]
[-] EMBL BX620403 [ GGAATCAGCGAGAGCCGGTTCATGGTGTCCAGCAAATCGCGCAGCTCGGGCTGCAAATCATCCATCGCCCGTATCTCGAGCNGCAGCTTGTCCATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA A TGGGACGGTCCTCCCT GATGCGCTCCAGCGCAGCCGG ACAGTCTAG CCGGAACTTCTT CACGAACGAGTCG ATCGTCGGAAACTC GTCGCCCTG CACAATCTT GAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATTTTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTTTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACG ]
[-] EMBL BX622795 [ CATGAGCGTGATGAACATGGACACAATGTCGGCAATGCACTTGCTCGTGTTGCCCTTGTCGTCCCGGATGGTA A TGGGACGGTCCTCCCT GATGCGCTCCAGCGCAGCCGG ACAGTCTAG CCGGAACTTCTT CACGAACGAGTCG ATCGTCGGAAACTC GTCGCCCTG CACAATCTT GAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATTTTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTTTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGAATAACCAAAAATAATAAATT ]
consensusID : consensus_8080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 750 fasta sequence
[GTACCGTTTATCTGTTACCACCAATGTGGCCANCTCGGCCTCCAGATTAATCCTGTCGCCGTATTTCGACCGNCACTTNGTTCCATTGANGCGTGAATGAAACANTGGAACCACAATGGTCGGCAAATGCACTATTGCTTCAGTGTTTGCCCCTTGTTCGTTTCCCGGATGNGTTTAAATGGNACNGGTTCCCTCCCCCTGGAGTGCCGCTTCCAGCGCAGCCGGGACAAGTCTAGCCCNGGAACTTGCTTCACGAACGAGTCGTATCGTCGGANACTCGTCG-CCCTGCACA-ATCTTGAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGC-TTTTTCCAGATTTTGCAGC-GTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCC-GGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCC-TGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTT-TCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGA-ATA-ACCA-AAATAATAAATTTCACAGC-CTGCGACGAAACTTTGCATTGGATTGCC----CCTCGGGGGATC]
[-] EMBL AL932201 [GTACCGTTTATCTGTTACCACCAATGTGGCCANCTCGGCCTCCAGATTAATCCTGTCGCCGTATTTCGACCGNCACTTNGTTCCATTGANGCGTGAATGAAACANTGGAACCACAATGGTCGGCAAATGCACTATTGCTTCAGTGTTTGCCCCTTGTTCGTTTCCCGGATGNGTTTAAATGGNACNGGTTCCCTCCCCCTGGAGTGCCGCTTCCAGCGCAGCCGGGACAAGTCTAGCCCNGGAACTTGCTTCACGAACGAGTCGTATCGTCGGANACTCGTCG CCCTGCACANATCTTGAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGNCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCATTTTTCCAGATTTTGCAGCAGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCCAGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCGTGCATTTTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGTTTCTTTGTACTTTGTGCTGCCTAGTTTGTCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGAGAAGGCGAGTGCAATNTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAAANATATNCCAGAAATAATAAATTTCTCAGCACTGCGACGAAACTNTGCATT GATTG ]
[-] EMBL AL930842 [ GAAACTCGTCGCCCCTGCACA ATCTTGAACGCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGC TTTTTCCAGATTTTGCAGC GTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCC GGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCC TGCATTTTTGTGCGTGGTACAATTACTTCTCGGGT TTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTT TCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGA ATA ACCA AAATAATAAATTTCACAGC CTGCGACGAACTTTTGCATTGGATTGCCATAACCTCGGGGGATC]
[-] EMBL AL931187 [ TCG CCCTGCACA ATCTTGACCCCCACCTTGTACTGTACCAGCAGCTTCGAGCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGC TTTTTCCAGATTTTGCAGC GTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCTCGCCTGCC GGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCC TGCATTCTTGTGCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTT TCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACCTCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGA ATA ACCA AAATAATAAATTTCACAGC CTGCGACG AACTTTGCATTGGATTGNC CCTCGGGCGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8080#0 GCGCACATGCCTGCCTTTTNGTTGTATTTTTTTTCAATTAAACAGTATATATATTTCTTA 60
consensus_8080#1 ------------------------------------------------------------
consensus_8080#0 TAAGTTTTGGGTAAAAATATGCGCACTCCTACACCCTGCCTCAACTCAATCCCTCCTTTT 120
consensus_8080#1 ------------------------------------------------------------
consensus_8080#0 ATTGGCTTTCCAGCCACATCCCGTCCTGTGCTAGATCCTGTTAACCTTGTTCTAATACGC 180
consensus_8080#1 ------------------------------------------------------------
consensus_8080#0 TCGAAGACCTGTCCATTTGTTCGCGTGTGTTCCTTACAATCCTATGACTTATGTTCCTAT 240
consensus_8080#1 ------------------------------------------------------------
consensus_8080#0 TTACAGTCACAAGGAAATGCCGGTCCAACCCATTCCGACGCATTATGTGGTATGAAGCAG 300
consensus_8080#1 ------------------------------------------------------------
consensus_8080#0 ATTGTTAAATGCCGAGTAGGACGATTCCAGATCGAACAGCAGCTGGCGAACCTGCGCCTC 360
consensus_8080#1 ------------------------------------------------------------
consensus_8080#0 CGTTAGATCGTCGGACGCCTGCATCGTGTTCAGCGTGGCCAGCCAGTTCGAGACCTTCTC 420
consensus_8080#1 ------------------------------------------------------------
consensus_8080#0 CTTGCCCTCGAAGTTGTCCGGAATCAGCGAGAGCCGGTTCATCGTGTCCAGCAAATCGCG 480
consensus_8080#1 ------------------------------GTACCGTTTATCTGTTACCACCAATGTGGC 30
* *** ** ** *** *** *
consensus_8080#0 CAGCTCGGGCTGCAAATCATCCATCGC-CCGTATCTCGAGCCGCAGCTTGT-CCAT--GA 536
consensus_8080#1 CANCTCGGCCTCCAGATTAATCCTGTCGCCGTATTTCGACCGNCACTTNGTTCCATTGAN 90
** ***** ** ** ** * * * * ****** **** * ** * ** ****
consensus_8080#0 GCGTGA-TGAAC--ATGGA--CACAATG-TCGGCAA-TGCACT--TGCTC--GTGTTG-- 583
consensus_8080#1 GCGTGAATGAAACANTGGAACCACAATGGTCGGCAAATGCACTATTGCTTCAGTGTTTGC 150
****** **** **** ******* ******* ****** **** *****
consensus_8080#0 CCCTTGTCG---TCCCGGATGGT----AATGGGACGG-----TCCTCCCTGATGCGC--- 628
consensus_8080#1 CCCTTGTTCGTTTCCCGGATGNGTTTAAATGGNACNGGTTCCCTCCCCCTGGAGTGCCGC 210
******* ********* ***** ** * * ***** * **
consensus_8080#0 -TCCAGCGCAGCCGGAC--AGTCTAGCC--GGAACTT-CTTCACGAACGAGTCG-ATCGT 681
consensus_8080#1 TTCCAGCGCAGCCGGGACAAGTCTAGCCCNGGAACTTGCTTCACGAACGAGTCGTATCGT 270
************** ********* ******* **************** *****
consensus_8080#0 CGGAAACTCGTCGCCCTGCACAATCTTGAACGCCACCTTGTACTGTACCAGCAGCTTCGA 741
consensus_8080#1 CGGANACTCGTCGCCCTGCACAATCTTGAACGCCACCTTGTACTGTACCAGCAGCTTCGA 330
**** *******************************************************
consensus_8080#0 GCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATT 801
consensus_8080#1 GCAGGCGGCCGTATACTCCTGCGGCGTAATGCAATCCCGGATGTATGCTTTTTCCAGATT 390
************************************************************
consensus_8080#0 TTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCT 861
consensus_8080#1 TTGCAGCGTAGAGACCAGAGCGAACAGATCGGCCATGTTGTCGTACTTCTCTCGCTCCCT 450
************************************************************
consensus_8080#0 CGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGT 921
consensus_8080#1 CGCCTGCCGGTAGAGCTTCACCTCCTCGTACAGCTCTGGTCGATTATCCTGCATTTTTGT 510
************************************************************
consensus_8080#0 GCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTT 981
consensus_8080#1 GCGTGGTACAATTACTTCTCGGGTGTTGGGAGATTCTTTGTACTTTGTGCTGCCTAGTTT 570
************************************************************
consensus_8080#0 TCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACC 1041
consensus_8080#1 TCAATCACGAACAGACTGTTTTACGCACGGCATTGAAGGGATGGCGAGTGTAATTTGACC 630
************************************************************
consensus_8080#0 TCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGAATAACC 1101
consensus_8080#1 TCCGCGTGATGTATTCCGTTTTACCGAACAGAACACACGCTTAACTTAAGAAGAATAACC 690
************************************************************
consensus_8080#0 AAAAATAATAAATTTCACAGCACTGCGACGAAACTTTTGCATT----------------- 1144
consensus_8080#1 AAAA-TAATAAATTTCACAGC-CTGCGACGAAACTTT-GCATTGGATTGCCCCTCGGGGG 747
**** **************** *************** *****
consensus_8080#0 ---
consensus_8080#1 ATC 750
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||