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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8092#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 820 fasta sequence
[GCCCCGAGGTNNAAAAAAAAAAAAACGAGCCAAAACAGAACGAAATGCGCTGAGTACGCGAATGGTAACAGGTATTTTACCATCATACATTCAAATTTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGACGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATTGAACCCAAAATGATGAACATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGTTAGGAGCGTGGCGTACGCGATTAAACGAGGAAGAGAGCGAGAGAGATAGAGAGGGATAGAGAGAGAGAGAGAGGAAGGGATAAAGAGCGAGAGAGAGAGAGAGAGACAAAAAGAATGTGGAAAATGTAATTCTGATAAACAAGCAATTGGAGTGCCCATCTGGAATGGTGCACGGAAATAGGGATGAATAAAGAAATATATT]
[+] EMBL AL930159 [GCCCCGAGGTNNAAAAAAAAAAAAACGAGCCAAAACAGAACGAAATGCGCTGAGTACGCGAATGGTAACAGGTATTTTACCATCATACATTCAAATTTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGACGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATTGAACCCAAAATGATGAAC ]
[+] EMBL BX616124 [ ATGGTAACAGGTATTTTACCATCATACATTCAAA TTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGA GAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCA TGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGTTAGGAGCGTGGCGTACGCGATTAAACGAGGAAGAGAGCGAGAGAGATAGAGAGGGATAGAGAGAGAGAGAGAGGAAGGGATAAAGAGCGAGAGAGAGAGAGAGAGACAAAAAGAATGTGGAAAATGTAATTCTGATAAACAAGCAATTGGAGTGCCCATCTGGAATGGTGCACGGAAATAGGGATGAATAAAGAAATATATT]
consensusID : consensus_8092#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 782 fasta sequence
[AATGGTAACAGGTATTTTACCATCATACATTCAAATTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAGACAAGGAAAAACTGTATCCCCTCTCGGCTAAG-AAAATGTCGAGAAACGACAATAAAACTGTGAGA]
[+] EMBL BX616693 [AATGGTAACAGGTATTTTACCATCATACATTCAAATTTTGCTGGATGAAAACACAAGACAAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGTGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATT ]
[+] EMBL BX618121 [ CAAGACAAACAAGTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCAGGCCACGAGAGAGAACAACCCAAAATCAGTCACACTAGCCACACCGCCAAGAAAGCGCAAAACATGCCACA ]
[+] EMBL BX612762 [ AAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCATTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAGACAAGGAAAAACTGTATCCCCTCTCGGCTAAGAAAAATGTCGAGAAACGACAATAAAACTGTGAGA]
[+] EMBL BX617170 [ TAGCCACACCGTCAAGATAGTGCAAAACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTAAACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAAT ]
[+] EMBL BX618611 [ AACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCTGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATA ]
[+] EMBL BX617096 [ GATACAAGCGGATAAGGAGCGGAAATAGTAGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGAGAGATAAATAGAAAGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTGCATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATTGAACTCGTACACACAGAAGCATGAACACAAAATGATGAAGATGGAAAACAAAACATACGCTGAAAGTATGAACACATAAAAAGATAATAACACATGGTGAACGGACGACGAAGAGACTAGACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTAAAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAGACAAGGAAAAACTGTATCCCCTCTCGGCTAAG AAAATGTCGAGAAACGACAATAAAACTGTGAG ]
[+] EMBL BX615236 [ CGTGGCGTACGCGATTAAACGAGCGAAGGGTACGATCGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATCTCTATTATTATTAAAACCACATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATCAAAGACAAGGAAAAACGGTATCCCCTCTCGGCTAAG AAAAGGTCGAGAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8092#0 GCCCCGAGGTNNAAAAAAAAAAAAACGAGCCAAAACAGAACGAAATGCGCTGAGTACGCG 60
consensus_8092#1 ------------------------------------------------------------
consensus_8092#0 AATGGTAACAGGTATTTTACCATCATACATTCAAATTTTTGCTGGATGAAAACACAAGAC 120
consensus_8092#1 AATGGTAACAGGTATTTTACCATCATACATTCAAATTTT-GCTGGATGAAAACACAAGAC 59
*************************************** ********************
consensus_8092#0 AAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCA 180
consensus_8092#1 AAACAATTAACACACGTGTACTCTACCCTACACATAAGAAGCGCCATCACACAAAACTCA 119
************************************************************
consensus_8092#0 TTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAA 240
consensus_8092#1 TTCCACTAGAGAGAACAATCCAAAATCAGTCACACTAGCCACACCGTCAAGATAGTGCAA 179
************************************************************
consensus_8092#0 AACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGT 300
consensus_8092#1 AACATGTCACATGCAAATGCGGTTGTAATGCGATACAAGCGGATAAGGAGCGGAAATAGT 239
************************************************************
consensus_8092#0 AGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGACGAGATAAATAGAA 360
consensus_8092#1 AGCAACCCGATAGAGAGAATGAGAGGGTGCAAGAGAGAGAGAGAGA-GAGATAAATAGAA 298
********************************************** *************
consensus_8092#0 AGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTG 420
consensus_8092#1 AGAGACAGAAAGAGGGATAAGAAACAGGATAATACAATATACAAATGTATTGTTAAACTG 358
************************************************************
consensus_8092#0 CATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATT 480
consensus_8092#1 CATTATACTTACAGTGTCAACCGTTTACAGTAACATGCACACTATCAACGCGTATACATT 418
************************************************************
consensus_8092#0 GAACTCGTACACACAGAAGCATTGAACCCAAAATGATGAACATGGAAAACAAAACATACG 540
consensus_8092#1 GAACTCGTACACACAGAAGCAT-GAACACAAAATGATGAAGATGGAAAACAAAACATACG 477
********************** **** ************ *******************
consensus_8092#0 CTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTA 600
consensus_8092#1 CTGAAAGTATGAACACATAAAAAGATAACAACACATGGTGAACGGACGACGAAGAGACTA 537
************************************************************
consensus_8092#0 GACGCTGCTCTTGTGTGTTAGGAGCGTGGCGTACGCGATTAAACGAG-GAAGAGAGCGAG 659
consensus_8092#1 GACGCTGCTCTTGTGTGGTAGGAGCGTGGCGTACGCGATTAAACGAGCGAAGGGTACGAT 597
***************** ***************************** **** * ***
consensus_8092#0 ---AGAGATAGAGAGGGATAGAGAGA-----GAGAGAGAGGAAGGG----------ATAA 701
consensus_8092#1 CGCAAACATGAACATAATTCAAGAGAATATTGTAAAATACAAAAATTTCTATTATTATTA 657
* * ** * * * ***** * * * * ** ** *
consensus_8092#0 AGAGCG-AGAGAGAGAGAGAGAGACAAAAAGA-ATGTGGAAA---ATGTAATTCTGATAA 756
consensus_8092#1 AAACCATATATAAATATACCGCAACAAAAAAGTATATATATATATATATATATATTAAAG 717
* * * * * * * * * * ******* ** * * * ** ** * * * *
consensus_8092#0 ACAAGCAATTGGAGTGCCCATCTGGAATGGTGCACGGAAATAGGGATGAATAAAGAAATA 816
consensus_8092#1 ACAAGGAAAAACTGTATCCCCTCTCGGCTAAGAAAATGTCGAGAAACGACAATAAAACTG 777
***** ** ** ** * * ** * ** * * ** *
consensus_8092#0 TATT- 820
consensus_8092#1 TGAGA 782
*
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||