cluster # 81

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Anopheles gambiae
cluster # 81 cluster # 81 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_81#0 length = 637 sequences # 1

consensus_81#1 length = 438 sequences # 1

consensusID : consensus_81#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [GGCAGAATCGCGCACGAGGGTTTTTGCGTAGTAAAAGTGTACAAAAGCAAAGGTGTGAGCGTAGCAATCGCTTCACTTTGATGTGAGCAAGTGGATTGAAAGTTTAATGAAAAAATGTGTAAAATGGTGAAAAGTGTACGATTAGGTTGAGCTGTAGCATAAACACTGTAGCATAAAGTGCGAAGGGCGGACGAAGCGGCGGGTGGTAAAGATACAGTTTAGTGTTAGGAGTGTGCTTACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTTCGTGACATGACGTGGTGGGTGTGAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGCGATTTAAGGTGTTTCGGTGCGAAAATCCTCTCTTTGTGTCCTCTAATATAATTGATTCGGTCTCGGTGGTTGCAAAGTGTGTGTGCGTGTAGAAACGATTCGCGCGAGTAAAGCAAAGGACGCCCCGAAAACGGAAAACAAAGTGTTGGCGAATGGAATGAACCGCTTCGGAACAAGTGTNTTGCTGGTGCTGTGTGAGTGAGGTGTGTGCGTGGTAANGATCAGTGTNTCGAANAGGAAGGATATCAAAGGTGTCTAAAACNAGGCGNAGTTTCTCACC]

[+] EMBL BX467417             [GGCAGAATCGCGCACGAGGGTTTTTGCGTAGTAAAAGTGTACAAAAGCAAAGGTGTGAGCGTAGCAATCGCTTCACTTTGATGTGAGCAAGTGGATTGAAAGTTTAATGAAAAAATGTGTAAAATGGTGAAAAGTGTACGATTAGGTTGAGCTGTAGCATAAACACTGTAGCATAAAGTGCGAAGGGCGGACGAAGCGGCGGGTGGTAAAGATACAGTTTAGTGTTAGGAGTGTGCTTACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTTCGTGACATGACGTGGTGGGTGTGAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGCGATTTAAGGTGTTTCGGTGCGAAAATCCTCTCTTTGTGTCCTCTAATATAATTGATTCGGTCTCGGTGGTTGCAAAGTGTGTGTGCGTGTAGAAACGATTCGCGCGAGTAAAGCAAAGGACGCCCCGAAAACGGAAAACAAAGTGTTGGCGAATGGAATGAACCGCTTCGGAACAAGTGTNTTGCTGGTGCTGTGTGAGTGAGGTGTGTGCGTGGTAANGATCAGTGTNTCGAANAGGAAGGATATCAAAGGTGTCTAAAACNAGGCGNAGTTTCTCACC]




>consensus_81#0
GGCAGAATCGCGCACGAGGGTTTTTGCGTAGTAAAAGTGTACAAAAGCAAAGGTGTGAGC
GTAGCAATCGCTTCACTTTGATGTGAGCAAGTGGATTGAAAGTTTAATGAAAAAATGTGT
AAAATGGTGAAAAGTGTACGATTAGGTTGAGCTGTAGCATAAACACTGTAGCATAAAGTG
CGAAGGGCGGACGAAGCGGCGGGTGGTAAAGATACAGTTTAGTGTTAGGAGTGTGCTTAC
CCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTTCGTGACATGACGTGGTGGGTGTGAA
AAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGCGAT
TTAAGGTGTTTCGGTGCGAAAATCCTCTCTTTGTGTCCTCTAATATAATTGATTCGGTCT
CGGTGGTTGCAAAGTGTGTGTGCGTGTAGAAACGATTCGCGCGAGTAAAGCAAAGGACGC
CCCGAAAACGGAAAACAAAGTGTTGGCGAATGGAATGAACCGCTTCGGAACAAGTGTNTT
GCTGGTGCTGTGTGAGTGAGGTGTGTGCGTGGTAANGATCAGTGTNTCGAANAGGAAGGA
TATCAAAGGTGTCTAAAACNAGGCGNAGTTTCTCACC

consensusID : consensus_81#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [CACGCGTCCGCATCCGCGGTGTGTTGTTGGCGTTAGATGTTTGTGTCCCATACTTCTTCATTCGATCGGTTTATTTCGACTGTTTTTGCGTAGTAAAAGTATACAAAAGCAAAGGTGTGAGCGTACTAATCGCTTCACTTTGATGTGAGTAAGTGGATTGAAAGTTTAATGAAAAAATGTGTAAAATGGTGAAAAGTGTACGATTAGGTCGAGCTGTAGCATAAACACTGTAGCATAAAGTGCGAAGGGCGGACGAAGCGGCGAGTGGTAAAGATACAGTTTGGTGTTAGGAGTGTGCTTACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTCCGTGACATGACGTGGTGGGTGTGAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGCGATTTAAGGTGTTTCGGTG]

[+] EMBL BM628996             [CACGCGTCCGCATCCGCGGTGTGTTGTTGGCGTTAGATGTTTGTGTCCCATACTTCTTCATTCGATCGGTTTATTTCGACTGTTTTTGCGTAGTAAAAGTATACAAAAGCAAAGGTGTGAGCGTACTAATCGCTTCACTTTGATGTGAGTAAGTGGATTGAAAGTTTAATGAAAAAATGTGTAAAATGGTGAAAAGTGTACGATTAGGTCGAGCTGTAGCATAAACACTGTAGCATAAAGTGCGAAGGGCGGACGAAGCGGCGAGTGGTAAAGATACAGTTTGGTGTTAGGAGTGTGCTTACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTCCGTGACATGACGTGGTGGGTGTGAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGCGATTTAAGGTGTTTCGGTG]




>consensus_81#1
CACGCGTCCGCATCCGCGGTGTGTTGTTGGCGTTAGATGTTTGTGTCCCATACTTCTTCA
TTCGATCGGTTTATTTCGACTGTTTTTGCGTAGTAAAAGTATACAAAAGCAAAGGTGTGA
GCGTACTAATCGCTTCACTTTGATGTGAGTAAGTGGATTGAAAGTTTAATGAAAAAATGT
GTAAAATGGTGAAAAGTGTACGATTAGGTCGAGCTGTAGCATAAACACTGTAGCATAAAG
TGCGAAGGGCGGACGAAGCGGCGAGTGGTAAAGATACAGTTTGGTGTTAGGAGTGTGCTT
ACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTCCGTGACATGACGTGGTGGGTGTG
AAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGCG
ATTTAAGGTGTTTCGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_81#0      ------------------------------------------------------------
consensus_81#1      CACGCGTCCGCATCCGCGGTGTGTTGTTGGCGTTAGATGTTTGTGTCCCATACTTCTTCA 60
                                                                                

consensus_81#0      ---GGCAGAATCGCGCACGAGGGTTTTTGCGTAGTAAAAGTGTACAAAAGCAAAGGTGTG 57
consensus_81#1      TTCGATCGGTTTAT-TTCGACTGTTTTTGCGTAGTAAAAGTATACAAAAGCAAAGGTGTG 119
                       *   *  *      ***  ******************* ******************

consensus_81#0      AGCGTAGCAATCGCTTCACTTTGATGTGAGCAAGTGGATTGAAAGTTTAATGAAAAAATG 117
consensus_81#1      AGCGTACTAATCGCTTCACTTTGATGTGAGTAAGTGGATTGAAAGTTTAATGAAAAAATG 179
                    ******  ********************** *****************************

consensus_81#0      TGTAAAATGGTGAAAAGTGTACGATTAGGTTGAGCTGTAGCATAAACACTGTAGCATAAA 177
consensus_81#1      TGTAAAATGGTGAAAAGTGTACGATTAGGTCGAGCTGTAGCATAAACACTGTAGCATAAA 239
                    ****************************** *****************************

consensus_81#0      GTGCGAAGGGCGGACGAAGCGGCGGGTGGTAAAGATACAGTTTAGTGTTAGGAGTGTGCT 237
consensus_81#1      GTGCGAAGGGCGGACGAAGCGGCGAGTGGTAAAGATACAGTTTGGTGTTAGGAGTGTGCT 299
                    ************************ ****************** ****************

consensus_81#0      TACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTTCGTGACATGACGTGGTGGGTGT 297
consensus_81#1      TACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTCCGTGACATGACGTGGTGGGTGT 359
                    ************************************* **********************

consensus_81#0      GAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGC 357
consensus_81#1      GAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGC 419
                    ************************************************************

consensus_81#0      GATTTAAGGTGTTTCGGTGCGAAAATCCTCTCTTTGTGTCCTCTAATATAATTGATTCGG 417
consensus_81#1      GATTTAAGGTGTTTCGGTG----------------------------------------- 438
                    *******************                                         

consensus_81#0      TCTCGGTGGTTGCAAAGTGTGTGTGCGTGTAGAAACGATTCGCGCGAGTAAAGCAAAGGA 477
consensus_81#1      ------------------------------------------------------------
                                                                                

consensus_81#0      CGCCCCGAAAACGGAAAACAAAGTGTTGGCGAATGGAATGAACCGCTTCGGAACAAGTGT 537
consensus_81#1      ------------------------------------------------------------
                                                                                

consensus_81#0      NTTGCTGGTGCTGTGTGAGTGAGGTGTGTGCGTGGTAANGATCAGTGTNTCGAANAGGAA 597
consensus_81#1      ------------------------------------------------------------
                                                                                

consensus_81#0      GGATATCAAAGGTGTCTAAAACNAGGCGNAGTTTCTCACC 637
consensus_81#1      ----------------------------------------