cluster # 8127

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Anopheles gambiae
cluster # 8127 cluster # 8127 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8127#0 length = 780 sequences # 8

consensus_8127#1 length = 710 sequences # 1

consensusID : consensus_8127#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 780
fasta sequence

                              [GTCCGAGGAGCTAGCTAGGCGCCACAAAAATTTAATCGGAAATTGTAACAAGAAAAAAAGTAAACTTTTAGAAGAAGAAAAGATACGAAACACAACACACAAAAAACTAACCAACGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG-AAACAAAGGGCGGTTGCGAATAGTTAGAA-TAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGACGTTCTGTTTTT-AATCGAGTCTTATAGGTTGTTGATGTTACTTGTTGTAATGTTGCTGCGGTACATTAA-GGTGTGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTCCCTGCTGCTGCAAATTCGAGCAACCGCAGTGGGACGTAATGGTCGGGAAGGAAGCGTATACCTTTACACATATCAC]

[+] EMBL BX603329             [GTCCGAGGAGCTAGCTAGGCGCCACAAAAATTTAATCGGAAATTGTAACAAGAAAAAAAGTAAACTTTTAGAAGAAGAAAAGATACGAAACACAACACACAAAAAACTAACCAACGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGGGAA                                                                                                                                                                                                                      ]
[+] EMBL BX601655             [                                                      AAAAAGTAAACTTTTAGAAGAAGAAAAGATACGAAACACAACACACAAAAAACTAACCAACGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGACGTTCTGTTTTT A                                                                                                                                                                                ]
[+] EMBL BX626268             [                                                                  TTTAGAAGAAGAAAAGATACGAAACACAACACACAAAAAACTAACCANCGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGACGTTCTGTTTTT AATCGAGTCTTATAGGTTGTTGATGTTACTTGTTGTAATGTTGCTGCGGTACATTAA GGTGTGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTCCCTGCTGCTGCAAATTCGAGCAACCGCAGTGGGACGTAATGGTCGGGAAGGAAGCGTATACCTTTACACATATCAC]
[+] EMBL BX623869             [                                                                                           ACAACACACAAAAAACTAACCAACGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGA                                                                                                                                                                                              ]
[+] EMBL BX616576             [                                                                                            CAACACACAAAAAACTAACCAACGAAGCAAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGG                                                                                                                                                                                                                         ]
[+] EMBL BX628776             [                                                                                                                        AAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGGGAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAG AAACAAAGGGCGGTTGCGAATAGTTAGAA TAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGACGTTCTGTTTTT AATCGAGTCTTATAGGTTGTTGATGTTACTTGTTGTAATGTTGCTGCGGTACATTAA GGTGTGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTCCCTGCTGCTGCAAATTCGAGCAACCGCAGTGGGA                                          ]
[+] EMBL AL929649             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAGCAAACAAAGGGCGGTTGCGAATAGTTAGAACTAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGACGTTCTGTTTTTAAATCGAGTCTTATAGGTTGTTGATGTTACTTGTTGTAATGTTGCTGCGGTACATTAACGGTGTGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTCCCTGCTGCTGCAAA                                                              ]
[+] EMBL BM655652             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTCCCTGCTGCTGCAAATTCTAGCAACCGCAGTGGGACGTAATGGTCGGGAAGGAAGCGTATACCTTTACACA      ]




>consensus_8127#0
GTCCGAGGAGCTAGCTAGGCGCCACAAAAATTTAATCGGAAATTGTAACAAGAAAAAAAG
TAAACTTTTAGAAGAAGAAAAGATACGAAACACAACACACAAAAAACTAACCAACGAAGC
AAGCAGAAGCAAACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAAATGAAAAGG
TAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTTTTAGGATAG
CAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCAATGGATTAGTGCTTTCGG
GAGGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTTACTAGTTCATGTT
TCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCGTGCTGGAAAGTCC
TAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGAC
AGCCAAAACAGACAAGCAGAGAAACCATTTTCAGAAACAAAGGGCGGTTGCGAATAGTTA
GAATAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGAACGCGAGACGTTCTGT
TTTTAATCGAGTCTTATAGGTTGTTGATGTTACTTGTTGTAATGTTGCTGCGGTACATTA
AGGTGTGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTCCCTGCTGCTGCAAATT
CGAGCAACCGCAGTGGGACGTAATGGTCGGGAAGGAAGCGTATACCTTTACACATATCAC

consensusID : consensus_8127#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [CCCCACCCAGATGCGNNNNCTTANCTCGAGGCAGAATTGTCCCGACGGTGTACAGATAGTGTAACTTCATTCTAGTGGCCGTGCTGGAAAGTCCTAAAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCAAAACAGACAAGCAGAGAAACCATTTTCAGAAACANCAGGGCGGCTTGCGAACTAGTTACGCCATAACTTACGCGTACGTTAGTTGGGCAACATCGCGGACTGNTGGCGAACGCGAGACGTNCTGTCTTCTATAACTCCGCACGGTCTTTATAAGAGGTTCGTNCGCACTGGCTTACCTACGCTCATGNAANCAGGTTATCGCCTGCCGTGCTAACATTTTAACGGGCTGTTNGCCGCTGCNGTACATCGTGNTAACTTTNTTNAAACTTGCCTTGGNGGACTNCTCGGGTTTACCCCATGACCTTGGTCGCTTGGGCCACAAAAGTTTTCCCGGAAGGACTAAAATCCCCCGGGCCAAANGGTCGGGNGCACCACCNGCTTAAANACTTGGGGGATNCCCAGGCTGGCACAACACGGGGACAAAGGCCCGGTTTTACTTTACACCGCCTTTTTGTTAAAAGCCCAACCATTTANTTCTCNCAANGCACCCTTTTTTATGGGAGCCACCCCTCCGGGCGACCAAAGTTTACCAACCAACATTCTACNCCAACG]

[+] EMBL AL696616             [CCCCACCCAGATGCGNNNNCTTANCTCGAGGCAGAATTGTCCCGACGGTGTACAGATAGTGTAACTTCATTCTAGTGGCCGTGCTGGAAAGTCCTAAAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCAAAACAGACAAGCAGAGAAACCATTTTCAGAAACANCAGGGCGGCTTGCGAACTAGTTACGCCATAACTTACGCGTACGTTAGTTGGGCAACATCGCGGACTGNTGGCGAACGCGAGACGTNCTGTCTTCTATAACTCCGCACGGTCTTTATAAGAGGTTCGTNCGCACTGGCTTACCTACGCTCATGNAANCAGGTTATCGCCTGCCGTGCTAACATTTTAACGGGCTGTTNGCCGCTGCNGTACATCGTGNTAACTTTNTTNAAACTTGCCTTGGNGGACTNCTCGGGTTTACCCCATGACCTTGGTCGCTTGGGCCACAAAAGTTTTCCCGGAAGGACTAAAATCCCCCGGGCCAAANGGTCGGGNGCACCACCNGCTTAAANACTTGGGGGATNCCCAGGCTGGCACAACACGGGGACAAAGGCCCGGTTTTACTTTACACCGCCTTTTTGTTAAAAGCCCAACCATTTANTTCTCNCAANGCACCCTTTTTTATGGGAGCCACCCCTCCGGGCGACCAAAGTTTACCAACCAACATTCTACNCCAACG]




>consensus_8127#1
CCCCACCCAGATGCGNNNNCTTANCTCGAGGCAGAATTGTCCCGACGGTGTACAGATAGT
GTAACTTCATTCTAGTGGCCGTGCTGGAAAGTCCTAAAGGCGTGCGCGCGAAAGTTGTAC
ATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCAAAACAGACAAGCAGAGAAACCA
TTTTCAGAAACANCAGGGCGGCTTGCGAACTAGTTACGCCATAACTTACGCGTACGTTAG
TTGGGCAACATCGCGGACTGNTGGCGAACGCGAGACGTNCTGTCTTCTATAACTCCGCAC
GGTCTTTATAAGAGGTTCGTNCGCACTGGCTTACCTACGCTCATGNAANCAGGTTATCGC
CTGCCGTGCTAACATTTTAACGGGCTGTTNGCCGCTGCNGTACATCGTGNTAACTTTNTT
NAAACTTGCCTTGGNGGACTNCTCGGGTTTACCCCATGACCTTGGTCGCTTGGGCCACAA
AAGTTTTCCCGGAAGGACTAAAATCCCCCGGGCCAAANGGTCGGGNGCACCACCNGCTTA
AANACTTGGGGGATNCCCAGGCTGGCACAACACGGGGACAAAGGCCCGGTTTTACTTTAC
ACCGCCTTTTTGTTAAAAGCCCAACCATTTANTTCTCNCAANGCACCCTTTTTTATGGGA
GCCACCCCTCCGGGCGACCAAAGTTTACCAACCAACATTCTACNCCAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8127#0      -----GTCCGAGGAGCTAGCTAGGCGCCACAAAAATTTAATCGGAAATTGTAACAAGAAA 55
consensus_8127#1      CCCCACCCAGATGCGNNNNCTTANCTCGAGGCAGAATTGTCCCGACGGTGTACAGATAGT 60
                             * ** * *    **   * * *   * * **   * **   ****   * *  

consensus_8127#0      AAAAGTAAACTTT--TAGAAGAAGAAAAGATACGAAACACAACACACAAAAAACTAACCA 113
consensus_8127#1      GTAACTTCATTCTAGTGGCCGTGCTGGAAAGTCCTAAAGGCGTGCGCGCGAAAGTTGTAC 120
                        ** *  * * *  * *  *      * *  *  **       * *   *** *     

consensus_8127#0      ACGAAGCAAG-CAGAAGCA-AACCATTAGTGTGTAAAAGAGGAAAGAGAAGAAAACGCAA 171
consensus_8127#1      ATTAAGTGTGTCGGGATCATAAGCAACACAGGACAGCAAAACAGACAAGCAGAGAAACCA 180
                      *  ***   * * * * ** ** **  *  *   *  * *  * * *     * *  * *

consensus_8127#0      ATGAAAAGGTAAACTGTAGCGTAAATCGCGTAATCGTATTCGATAAGGTATCAGCTCGTT 231
consensus_8127#1      TTTTCAG---AAACANCAGGGCGGCTTGCGAACTAGT-TACGCCATAACTTACGCGTACG 236
                       *   *    ****   ** *    * *** * * ** * **  *     *  **     

consensus_8127#0      TTAGGATAGCAAACTACCCCAAGTTGGAAGAAAATCCGCTGCAAAGAACCA---ATGGAT 288
consensus_8127#1      TTAGTTGGGCAA--CATCGCGGACTGNTGGCGAACGCGAGACGTNCTGTCTTCTATAACT 294
                      ****    ****   * * *    **   *  **  **   *       *    **   *

consensus_8127#0      TAGTGCTTTCGGGA-GGGAAATAAGTTTACAAAGGCAGATAAACTACGGTCAGGAAGGTT 347
consensus_8127#1      CCGCACGGTCTTTATAAGAGGTTCGTNCGCACTGGC---TTACCTACGCTCATGNA---- 347
                        *  *  **   *   **  *  **   **  ***   * * ***** *** * *    

consensus_8127#0      ACTAGTTCATGTTTCGTCAGTCGTTCATCGTAGAGATAGTGTAACTTCATTCTAGTGGCG 407
consensus_8127#1      ANCAGGTTATCGCCTGCCGTGCTAACATTTTAACGGGCTGTTNGCCGCTGCNGTACATCG 407
                      *  ** * **     * *   *   ***  **  *      *  *  *          **

consensus_8127#0      TGCTGGAAAGTCCTAGAGGCGTGCGCGCGAAAGTTGTACATTAAGTGTGTCGGGATCATA 467
consensus_8127#1      TGNT--AACTTTNTTNAAACTTGCCTTGGNGGACTNCTCGG-GTTTACCCCATGACC-TT 463
                      ** *  **  *  *  *  * ***    *     *   *      *    *  ** * * 

consensus_8127#0      AGCAACACAGGACAGCCAAAACAGACAAGCAGAGAAACCATTTTCAGAAACAAAGGG-CG 526
consensus_8127#1      GGTCGCTTGGGCCACAAAAGTTTTCCCGGAAGGACTAAAATCCCCCGGGCCAAANGGTCG 523
                       *   *   ** **   **      *  * **    *  **   * *   **** ** **

consensus_8127#0      GTTGCG--AATAGTTAGAATAATTACGCGTACGTTAGTTGGGAAATCGGGATGATGGCGA 584
consensus_8127#1      GGNGCACCACCNGCTTAAANACTTGGGGGATNCCCAGGCTGGCA--CAACACGGGGACAA 581
                      *  **   *   * *  ** * **  * *      **   ** *  *   * *  * * *

consensus_8127#0      ACGCGAGACGTTCTGTTTTTAATCGAGTCTTATAGGTTGTTGATGTTACTTGTTGTAATG 644
consensus_8127#1      AGGCCCG--GTTTTACTTTACACCGCCTTTT------TGTTAAAAGC-CCAACCATTTAN 632
                      * **  *  *** *  ***  * **  * **      **** *     *      *    

consensus_8127#0      TTGCTGCGGTACATTAAGGTGTGCGTGTGTTTGTGTATTTTAATGCTGGATTTTGGTTTC 704
consensus_8127#1      TTCTCNCAANGCACCCTTTTTTATGGGAGCCACCCCTCCGGGCGACCAAAGTTTACCAAC 692
                      **    *    **      * *  * * *                *   * ***     *

consensus_8127#0      CCTGCTGCTGCAAATTCGAGCAACCGCAGTGGGACGTAATGGTCGGGAAGGAAGCGTATA 764
consensus_8127#1      CAACATTCTACNCCAACG------------------------------------------ 710
                      *    * ** *     **                                          

consensus_8127#0      CCTTTACACATATCAC 780
consensus_8127#1      ----------------