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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 836 fasta sequence
[GAGGCAGATCGGC-C-NGGATTCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGAAAG-GCAATCCATCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCG-GAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAACGAGCCAACGCCGGGCAACGTGAACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA-TACGGGTGAAAA-TTGAGC-GAAACATTACGCACAGCCTGAAGCTGGACATCTAC-ATCAAGAAAGGTGCCCAC-GCGACGGAAGACGAAATTAA--C-AAGCAGATCA-ATGATAA-GGAACGA-ATAGC-AGCGGCTATGGAGAATCCAAA-CCTCAG-ACA-GTTGGT-GGAGAA-CT-GCATC-A-AAG-ATG-AA-GATTGA--AAGACTGAACGCTATT-GGTG-CAATAAATCA-TTTTTTTGTGGTCATGGAAGGTGTGTGCTCACGGGGTAAGCAGTTGAAGGTAATCAATTGTTGGTAAAATAAATAGTTTCCTATATAAGTACGAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCCGCCCC]
[+] EMBL BX468407 [GAGGCAGATCGGCACGTGGATTCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGAAAG GCAATCCATCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCG GAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAACGAGCCAACGCCGGGCAACGTGAACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCAGTACGGGTGAAAATTTGAGCGGAAACATTACGCACAGCCTGAAGCTGGACATCTACGATCAAGAAAGGTGCCCACAGCGACGGAAGACGAAATTAAAGCAAAGCAGATCACATGATAAGGGAACGAGATAGCAAGCGGCTATGGAGAATCCAAAGCCTCAGNACAGGTTGGTGGGAGAACCTGGGNTCGANANGCATGNAAGGATGGANNAGGACTGAACGCTATTGGGTGNCAATAnn ]
[+] EMBL AL934574 [ ATNGGC C NAGCATCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGAAAG GCAATCCATCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCG GAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAACGAGCCAACGCCGGGCAACGTGAACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA TACGGGTGAAAA TTGAGC GAAACATTACGCACAGCCTGAAGCTGGACATCTAC ATCAAGAAAGGTGCCCAC GCGACGGAAGACGAAATTAA C AA ]
[+] EMBL BM637041 [ ccGATTCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCA TCACACTCCTTGCCTCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGGGGATCCGCACCGTCGGCCGCGAAAG GCAATCCGTCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCG GAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAACGAGCCGACGCCGGGCAACGTGAACGTGGTGCGGGTCGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA TACGGGTGAAAA TAGAGC GAAACATTACGCACAGTCTGAAGCTGGACATCTAC ATCAAGAAAGGTGCCCAC GCGACGGAAGACGAAATTAA C AAGCAGATCA ATGATAA GGAACGA ATAGC AGCGGCTATGGAGAATCCAAA CCTCAG ACA GTTGGT GGAGAA CT GCATC A AAG ATG AA GATTGA AAGACT ]
[+] EMBL CNS090K8 [ cATTCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAG ATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGAAAGCGCAATCCATCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCGCGAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAAAAAACCAACGCCGGGCAACGTGAACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA TACGGGTGAAAA TTGAGC GAAACATTACGCACAGCCTGAAGCTGGACATCTAC ATCAAGAAAGGTGCCCAC GCGACGGAAGACGAAATTAA C AAGCAGATCA ATGATAA GGAACGA ATAGC AGCGGCTATGGAGAATCCAAA CCTCAG ACA GTTGGT GGAGAA CT GCATC A AAG ATG AA GATTGA AAGACTGAACGCTATT GGTG CAATAAATCA TTTTTTTGTGGTCATGGAAGGTGTGTGCTCACGGGGTAAGCAGTTGAAGGTAATCAATTGTTGGTAAAATAAATAGTTTCCTATATAAGTACGAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCCGCCCC]
[+] EMBL BM599799 [ ccgGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCA TCACACTCCTTGCCTCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGGGGATCCGCACCGTCGGCCGCGAAAG GCAATCCGTCAATCGGTGGAACAACAGCAAATGGTGAAGTGCCTCCACGACCGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACTTTCTGCGCACAATACGCGACCCG GAAAAGCCCAGCACGCTGGAAGATCTGCACGTCGTGTACGAGGAGGGAATATTCGTGAACGAGCCGACGCCGGGCAACGTGAACGTGGTGCGGGTCGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA TACGGGTGAAAA TAGAGC GAAACATTACGCACAGCCTGAAGCTGGACATCTAC ATCAAGAAAGGTGCCCAC GCGACGGAAGACGAAATTAA C AAGCAGATCA ATGATAA GGAACGA ATAGC AGCGGCTATGGAGAATCCAAA CCTCAG ACA GTTGGT GGAGAA CT GCATC A AAG ATG AA GATTGA AAGACTGAACGCTATC GGTG CAATAAATCATTTTTTTTGTGGTCATGGAAGGTGTG ]
[+] EMBL BX612222 [ AACGCCGGGCAACGTGAACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTGTTCGCTGGCAACGCTGATAGGGCTGTGCA TACGGGTGAAAA TTGAGC GAAACATTACGCACAGCCTGAAGCTGGACATCTAC ATCAAGAAAGGTGCCCAC GCGACGGAAGACGAAATTAA C AAGCAGATCA ATGATAA GGAACGA ATAGC AGCGGCTATGGAGAATCCAAA CCTCAG ACA GTTGGT GGAGAA CT GCATC A AAG ATG AA GATTGA AAGACTGAACGCTATT GGTG CAATAAATCA TTTTTTTGTGGT ATGGAAGGTGTGTGCTCACGGGGTAAGCAGTTGAAGGTAATCAATTGTTGGTAAAATAAATAGTTTCCTA ]
consensusID : consensus_8132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence
[GTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGGATGCTTTCGTTTTTCCGCNAGGAAAACCTCCGGACGGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGGAAAGGCAATCCATCAATCGGTGGNAACAACAGCAAATGGTGAAGTGCCTCCACGGANNCGGAGCCTGCAAGGAGCTGGGCTACCGNAAATGCGGAACGGATTTGCGTGAAACCATCTACGGACTTTCTGCGCACAATNACGCGGACCCGGGAAAAGCCCAGCNACGCTGGGAAGGATCTGCNACGTCGTGTACGGAGGGAGGGGAANNTTCGTGGAACGGAGCCAACGCCGGGCAACGTGCAACGTGGTGCGGGTTCGCAGTTTAATCNCGGA]
[+] EMBL BX619830 [GTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGGATGCTTTCGTTTTTCCGCNAGGAAAACCTCCGGACGGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCCGCGGAAAGGCAATCCATCAATCGGTGGNAACAACAGCAAATGGTGAAGTGCCTCCACGGANNCGGAGCCTGCAAGGAGCTGGGCTACCGNAAATGCGGAACGGATTTGCGTGAAACCATCTACGGACTTTCTGCGCACAATNACGCGGACCCGGGAAAAGCCCAGCNACGCTGGGAAGGATCTGCNACGTCGTGTACGGAGGGAGGGGAANNTTCGTGGAACGGAGCCAACGCCGGGCAACGTGCAACGTGGTGCGGGTTCGCAGTTTAATCNCGGA]
consensusID : consensus_8132#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 365 fasta sequence
[GGCAAGAATCGCCACGAGGTGAAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCGCGAAAGGCAATCCATCAATCGGTGGAACAACAGCCAATGGTGAAGTGCCTCCACGACGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACATTTCTGGCGCACAATTACGCGAACCGGAAAAGCCCAGCACGCTGGAAGATCTCGCACGTCGTGT]
[+] EMBL AL696327 [GGCAAGAATCGCCACGAGGTGAAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACCTCCGACGAGTTGCCCACCGGTGGCTCCGCACCGTCGGCGCGAAAGGCAATCCATCAATCGGTGGAACAACAGCCAATGGTGAAGTGCCTCCACGACGAGCCTGCAAGAGCTGGGCTACCGAAATGCGAACGATTTGCGTGAAACCATCTACGACATTTCTGGCGCACAATTACGCGAACCGGAAAAGCCCAGCACGCTGGAAGATCTCGCACGTCGTGT]
[-] EMBL CNS090K9 [ TTTCTCCGCTCTTTCCCGTGATGAAAATTGTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACAAAAAAAACACCTTCCATCGTGATGCTTTCGTTTTTCCGCAAGAAAACC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8132#0 GAGGCAGATCGGCCNGGATTCAGTGCAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATT 60
consensus_8132#2 -GGCAAGAATCGCCACGA---GGTGAAGTCGTTTCTCCGCTCTTTCCCGTGATGAAAATT 56
consensus_8132#1 ------------------------------GTTTCTCCGCTCTTTCCCGTGATGAAAATT 30
******************************
consensus_8132#0 GTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATC 120
consensus_8132#2 GTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATC 116
consensus_8132#1 GTACGCAGTATTTAAATTGTGTTCTGATATTCCTCATCCACCACACACACACCTTCCATC 90
************************************************************
consensus_8132#0 GTG-ATGCTTTCGTTTTTCCGCAAG-AAAACCTCCGAC--GAGTTGCCCACCGGTGGCTC 176
consensus_8132#2 GTG-ATGCTTTCGTTTTTCCGCAAG-AAAACCTCCGAC--GAGTTGCCCACCGGTGGCTC 172
consensus_8132#1 GTGGATGCTTTCGTTTTTCCGCNAGGAAAACCTCCGGACGGAGTTGCCCACCGGTGGCTC 150
*** ****************** ** ********** ********************
consensus_8132#0 CGCACCGTCGGCCGCG-AAAGGCAATCCATCAATCGGTGGAA-CAACAGCAAATGGTGAA 234
consensus_8132#2 CGCACCGTCGGC-GCG-AAAGGCAATCCATCAATCGGTGGAA-CAACAGCCAATGGTGAA 229
consensus_8132#1 CGCACCGTCGGCCGCGGAAAGGCAATCCATCAATCGGTGGNAACAACAGCAAATGGTGAA 210
************ *** *********************** * ******* *********
consensus_8132#0 GTGCCTCCACG---ACCGAGCCTGCAAG-AGCTGGGCTACCGAAA-TGCGAAC--GATTT 287
consensus_8132#2 GTGCCTCCACG---AC-GAGCCTGCAAG-AGCTGGGCTACCGAAA-TGCGAAC--GATTT 281
consensus_8132#1 GTGCCTCCACGGANNCGGAGCCTGCAAGGAGCTGGGCTACCGNAAATGCGGAACGGATTT 270
*********** * *********** ************* ** **** * *****
consensus_8132#0 GCGTGAAACCATCTACGAC-TTTCTG-CGCACAAT-ACGCGACCC--GGAAAAGCCCAGC 342
consensus_8132#2 GCGTGAAACCATCTACGACATTTCTGGCGCACAATTACGCGAACC--GGAAAAGCCCAGC 339
consensus_8132#1 GCGTGAAACCATCTACGGACTTTCTG-CGCACAATNACGCGGACCCGGGAAAAGCCCAGC 329
***************** ****** ******** ***** ** *************
consensus_8132#0 A-CGCTGGAA--GATCT-GCACGTCGTGTACGAGGAG---GGAATATTCGTGAAC--GAG 393
consensus_8132#2 A-CGCTGGAA--GATCTCGCACGTCGTGT------------------------------- 365
consensus_8132#1 NACGCTGGGAAGGATCTGCNACGTCGTGTACGGAGGGAGGGGAANNTTCGTGGAACGGAG 389
****** * ***** *********
consensus_8132#0 CCAACGCCGGGCAACGTG-AACGTGGTGCGGGTTGAGTTTAATCCGACCGTACCGCACTG 452
consensus_8132#2 ------------------------------------------------------------
consensus_8132#1 CCAACGCCGGGCAACGTGCAACGTGGTGCGGGTTCGCAGTTTAATCNCGGA--------- 440
consensus_8132#0 TTCGCTGGCAACGCTGATAGGGCTGTGCATACGGGTGAAAATTGAGCGAAACATTACGCA 512
consensus_8132#2 ------------------------------------------------------------
consensus_8132#1 ------------------------------------------------------------
consensus_8132#0 CAGCCTGAAGCTGGACATCTACATCAAGAAAGGTGCCCACGCGACGGAAGACGAAATTAA 572
consensus_8132#2 ------------------------------------------------------------
consensus_8132#1 ------------------------------------------------------------
consensus_8132#0 CAAGCAGATCAATGATAAGGAACGAATAGCAGCGGCTATGGAGAATCCAAACCTCAGACA 632
consensus_8132#2 ------------------------------------------------------------
consensus_8132#1 ------------------------------------------------------------
consensus_8132#0 GTTGGTGGAGAACTGCATCAAAGATGAAGATTGAAAGACTGAACGCTATTGGTGCAATAA 692
consensus_8132#2 ------------------------------------------------------------
consensus_8132#1 ------------------------------------------------------------
consensus_8132#0 ATCATTTTTTTGTGGTCATGGAAGGTGTGTGCTCACGGGGTAAGCAGTTGAAGGTAATCA 752
consensus_8132#2 ------------------------------------------------------------
consensus_8132#1 ------------------------------------------------------------
consensus_8132#0 ATTGTTGGTAAAATAAATAGTTTCCTATATAAGTACGAAAAAAAAAAAAAAAAAAAAAAA 812
consensus_8132#2 ------------------------------------------------------------
consensus_8132#1 ------------------------------------------------------------
consensus_8132#0 GGCCAAATGTGCCCGAGCCGCCCC 836
consensus_8132#2 ------------------------
consensus_8132#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||