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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 804 fasta sequence
[CTTTGAGGTCCAGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC-ATCCTACGGG-AGCGAGAAG--CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCCTACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTGCCGCCACGCGAAATTCGTTCGATACGCATTGGACCGAAGTAGGCAGTGAAGGAGAATCGCGGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTGGCCGCCGCCGCGTACGCTACATGCGTGACAACCGATCTTAATGTAGCGCATCGTTCATGCGATAAAGAATTTAACAACTTCAAAGAGTGCATGAGGAAAGCCGCTATCGAAATGAAAACAAAGTTGTAGAAAGTTGACTTGTGTGAACGAAGCTAACAAACGTAGAAATCAGTTTAGATAACGAATG]
[+] EMBL BX619761 [CTTTGAGGTTCAGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACNAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGCNATCCTACGGGAAGCGAGAAGCCCACCCAG ]
[+] EMBL BM598411 [ CCGGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC ATCCTACGGG AGCGAGAAG CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCCTACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTGCCGCCACGCGAAATTCGTTCGATACGCATTGGACCGAAGTAGGCAGTGAAGGAGAATCGCGGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTGGCCGCCGCCGCGTACGCTACATGCGTGACAACCGATCTTAATGTAGCGCATCGTTCATGCGATAAAGAAT ]
[+] EMBL BM610804 [ CCGGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC ATCCTACGGG AGCGAGAAG CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCCTACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGG ]
[+] EMBL BM590244 [ ccgCAGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC ATCCTACGGG AGCGAGAAG CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCCTACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTGCCGCCACGCGAAATTCGTTCGATACGCATTGGACCGAAGTAGGCAGTGAAGGAGAATCGCGGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTGGCCGCCGCCGCGTACGCTACATGCGTGACAACCGATCTTAATGGAGCGCATCGTTCATGCGATAAAG ]
[+] EMBL BM642432 [ ccgCAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC ATCCTACGGG AGCGAGAAG CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTT ]
[+] EMBL BM629797 [ ccgCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGCCGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGa ]
[+] EMBL BX617953 [ GGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC ATCCTACGGG AGCGAGAAG CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACATTCAGTTCCCTTCTAACCGGCACCGCCCTACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTGCCGCCACGCGAAATTCGTTCGATACGCATTGGACCGAAGTAGGCAGTGAAGGAGAATCGCGGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTGGCCGCCGCCGCGTACGCTACATGCGTGACAACCGATCTTAATGTAGCGCATCGTTCATGCGATAAAGAATTTAACAACTTCAAAGAGTGCATGAGGAAAGCCGCTATCGAAATGAAAACAAAGTTGTAGAAAGTTGACTTGTGTGAACGAAGCTAACAAACGTAGAAATCAGTTTAGATAACGAATG]
consensusID : consensus_8139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[ATCCCCGAGGTTAGTGGAAAATTATACTTTTTCATGTCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAAACTAGATCGTGAATTTACAAAGCCGAACAAGGGAACAGCATTCTACGGGAGGCGAGAAGCAACCCAGGCAAGGGGAAATGGCACCCTGACCCGGAGACCGACCGCTTCGAGTCCGAAACGAAACTGGGTTCCAAAAGAAATCCCCGGTAACGTTTCAGTNTCCCCTTCTAAACCGGAAACGGGCCTTAACTGGCATATTCTTTTCCAAACCTCTATACGACCGCGTTTATTGCCGATCCCGTACCGGGTGCATTTGCCGACCACGCGCAAATTCGTACGATACGCATTGGACCGAANGTAANGACAGTGAAGGAGAATCGCGGNTGTACGTTAGCTCCTTTAGCGGNACCGTGCTTCGCAATG]
[+] EMBL AL695733 [ATCCCCGAGGTTAGTGGAAAATTATACTTTTTCATGTCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAAACTAGATCGTGAATTTACAAAGCCGAACAAGGGAACAGCATTCTACGGGAGGCGAGAAGCAACCCAGGCAAGGGGAAATGGCACCCTGACCCGGAGACCGACCGCTTCGAGTCCGAAACGAAACTGGGTTCCAAAAGAAATCCCCGGTAACGTTTCAGTNTCCCCTTCTAAACCGGAAACGGGCCTTAACTGGCATATTCTTTTCCAAACCTCTATACGACCGCGTTTATTGCCGATCCCGTACCGGGTGCATTTGCCGACCACGCGCAAATTCGTACGATACGCATTGGACCGAANGTAANGACAGTGAAGGAGAATCGCGGNTGTACGTTAGCTCCTTTAGCGGNACCGTGCTTCGCAATG]
consensusID : consensus_8139#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence
[CCGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGCGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGGTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGCATCCTACGGGAGCGAGAAGCAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCATACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTACCGCCACGCGAAATTCGTTCGATACGCATTGGACCAAAGTAGGCAGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTTGCCGGCGGCGCGTACGCT]
[+] EMBL BM608386 [CCGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGCGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGGTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGCATCCTACGGGAGCGAGAAGCAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCATACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTACCGCCACGCGAAATTCGTTCGATACGCATTGGACCAAAGTAGGCAGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTTGCCGGCGGCGCGTACGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8139#0 CTTTGAGGTCCAGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCC 60
consensus_8139#2 ------------------------------------------------------------
consensus_8139#1 ----------------------ATCCCCGAGGTTAGTGGAAAATTATACTTTTTCATGTC 38
consensus_8139#0 AAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGA 120
consensus_8139#2 ----------------------------------------------------------CC 2
consensus_8139#1 AAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGA 98
consensus_8139#0 GAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGT 180
consensus_8139#2 GAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGCGGCAATGCTGT 62
consensus_8139#1 GAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGT 158
************************************************ ***********
consensus_8139#0 CTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAA-CTAGATCGTGA--TTAC 237
consensus_8139#2 CTGAAGTGGCACAAGGTATCACTTTGCTGGTCCGGCATTCAA-CTAGATCGTGA--TTAC 119
consensus_8139#1 CTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAAACTAGATCGTGAATTTAC 218
***************************** ************ *********** ****
consensus_8139#0 AAAGCCGAA-AAGGAAA--GCATCCTACGGGAG-CGAGAAGCAACC--AGCAAGGGAAAT 291
consensus_8139#2 AAAGCCGAA-AAGGAAA--GCATCCTACGGGAG-CGAGAAGCAACC--AGCAAGGGAAAT 173
consensus_8139#1 AAAGCCGAACAAGGGAACAGCATTCTACGGGAGGCGAGAAGCAACCCAGGCAAGGGGAAA 278
********* **** ** **** ********* ************ ******* **
consensus_8139#0 --GCACCCTGACCCGAGA--CGACCGCTTCGAGTCCCGAAACGAAACTGGTTCC--AAAG 345
consensus_8139#2 --GCACCCTGACCCGAGA--CGACCGCTTCGAGTCCCGAAACGAAACTGGTTCC--AAAG 227
consensus_8139#1 TGGCACCCTGACCCGGAGACCGACCGCTTCGAGTCC-GAAACGAAACTGGGTTCCAAAAG 337
************* **************** ************* * * ****
consensus_8139#0 AAATCCCCGT--ACGTT-CAGTT--CCCTTCTAA-CCGGCACCG---CCCTACTG--ATA 394
consensus_8139#2 AAATCCCCGT--ACGTT-CAGTT--CCCTTCTAA-CCGGCACCG---CCATACTG--ATA 276
consensus_8139#1 AAATCCCCGGTAACGTTTCAGTNTCCCCTTCTAAACCGGAAACGGGCCTTAACTGGCATA 397
********* ***** **** ********* **** * ** * **** ***
consensus_8139#0 TTCTTTTCCAAACCTCTATACGAC-GCGTTTATTGCCGATCCCGTACCGGGTGCATT-GC 452
consensus_8139#2 TTCTTTTCCAAACCTCTATACGAC-GCGTTTATTGCCGATCCCGTACCGGGTGCATT-AC 334
consensus_8139#1 TTCTTTTCCAAACCTCTATACGACCGCGTTTATTGCCGATCCCGTACCGGGTGCATTTGC 457
************************ ******************************** *
consensus_8139#0 CG-CCACGCG-AAATTCGTTCGATACGCATTGGACCGAAGT---AGGCAGTGAAGGAGAA 507
consensus_8139#2 CG-CCACGCG-AAATTCGTTCGATACGCATTGGACCAAAGT---AGGCAGTG-------- 381
consensus_8139#1 CGACCACGCGCAAATTCGTACGATACGCATTGGACCGAANGTAANGACAGTGAAGGAGAA 517
** ******* ******** **************** ** * *****
consensus_8139#0 TCGCGGTGTT--GTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACG 565
consensus_8139#2 --------TT--GTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACG 431
consensus_8139#1 TCGCGGNTGTACGTTAGCTCCTTTAGCGGNACCGTGCTTCGCAATG-------------- 563
* ************ ** * ****************
consensus_8139#0 GGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTGGCCGCCGC 625
consensus_8139#2 GGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTTGCCGGCGG 491
consensus_8139#1 ------------------------------------------------------------
consensus_8139#0 CGCGTACGCTACATGCGTGACAACCGATCTTAATGTAGCGCATCGTTCATGCGATAAAGA 685
consensus_8139#2 CGCGTACGCT-------------------------------------------------- 501
consensus_8139#1 ------------------------------------------------------------
consensus_8139#0 ATTTAACAACTTCAAAGAGTGCATGAGGAAAGCCGCTATCGAAATGAAAACAAAGTTGTA 745
consensus_8139#2 ------------------------------------------------------------
consensus_8139#1 ------------------------------------------------------------
consensus_8139#0 GAAAGTTGACTTGTGTGAACGAAGCTAACAAACGTAGAAATCAGTTTAGATAACGAATG 804
consensus_8139#2 -----------------------------------------------------------
consensus_8139#1 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||