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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 898 fasta sequence
[CCAAGAATCGGCACGAGGTTATCCTACTCTCACTGGTCAGCTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGTTGGACATGCGAGAGGGAACGAAGGTGACGGAGTTCCTGCATCACGATGGAACGATAAACGCACTTGTTTTCTCGGATGATGGGAGCCACCTTTTCTCCGGTAGCAACGACGGTAGTATGACGGCGATCAATATGTCCAAATTAGCCGTCGATAAGACGTGGAAAAGCGCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTTAAAACATGGGATCTAATAACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAANAATAGCAAGTATGGACGAGTGCTTGCCCGACGGTACAGTGGTCCTCCGGATGGAGAACATTTCGCACTCCCTCGGTAACCCGGGTGGGTTGATATCATCCAGTATCCGAGAACAACGCGTTCCGTNAGGTTGGCTTAGGAGTTATTGGACTTCCGAAAGCCNTNAACCGGCCCATGGTTGGTTAGGGTAGATCCGGGCTTGAAAGNACAATTTTGCGCGGTTGGGTCTCGGGACGCCAATGGGAGCTCTTANGTTAATTGGGCCANGATCCACGAGAGAGGGANCCGGAGNAAAAGGCTGGGANANTCTACCGAT]
[+] EMBL BX468437 [CCAAGAATCGGCACGAGGTTATCCTACTCTCACTGGTCAGCTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGTTGGACATGCGAGAGGGAACGAAGGTGACGGAGTTCCTGCATCACGATGGAACGATAAACGCACTTGTTTTCTCGGATGATGGGAGCCACCTTTTCTCCGGTAGCAACGACGGTAGTATGACGGCGATCAATATGTCCAAATTAGCCGTCGATAAGACGTGGAAAAGCGCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTTAAAACATGGGATCTAATAACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAANAATAGCAAGTATGGACGAGTGCTTGCCCGACGGTACAGTGGTCCTCCGGATGGAGAACATTTCGCACTCCCTCGGTAACCCGGGTGGGTTGATATCATCCAGTATCCGAGAACAACGCGTTCCGTNAGGTTGGCTTAGGAGTTATTGGACTTCCGAAAGCCNTNAACCGGCCCATGGTTGGTTAGGGTAGATCCGGGCTTGAAAGNACAATTTTGCGCGGTTGGGTCTCGGGACGCCAATGGGAGCTCTTANGTTAATTGGGCCANGATCCACGAGAGAGGGANCCGGAGNAAAAGGCTGGGANANTCTACCGAT]
consensusID : consensus_8140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 876 fasta sequence
[CCGCCCACGCGTCCGCACAATAAATGTAAAAACGCTCGTTTTTCTATTTACGCTATAGTTAAACTTAAAATACTTGTTCGGTCAAAGCAATTTATCCTACTCCCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAATGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC-GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCT-AAT-AACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAAAAATAGCAAGTATGGACGAGTGCTTGCCGACGTACAGTGGTCTCCGGATGGAGAACATTTCGCACTCCTCGGTAACCGGGTGGTTGATATCATCAGTATCGAGACAACGCGTTCCGTTAGGTTGCTGGAGTATGATTCTAAACCTAGCGCCATGTGTTGGTTATCGGCTGAAGAAATTGCGGTTGGTTTGGAGAATGGAGCTCTAGTAATGGCCAACATCCAC]
[+] EMBL BM601026 [CCGCCCACGCGTCCGCACAATAAATGTAAAAACGCTCGTTTTTCTATTTACGCTATAGTTAAACTTAAAATACTTGTTCGGTCAAAGCAATTTATCCTACTCCCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAATGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC GCCCACAAAACTGC ]
[+] EMBL BX625163 [ tgTTTACGCTACAGTTAAACTTAAAATATTTGTTCGTCCAAAGCAATTTATCCCACTCCCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGAGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATACCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAACGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCACGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCT AAT AACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAAAAATAGCAAGTATGGACGAGTGCTTGCCGACGTACAGTGGTCTCCGGATGGAGAACA ]
[+] EMBL CNS09J6Z [ ACGCTATAGTTAAACTTAAAATACTTGTTCGGTCAAAGCAATTTATCCTACTCCCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAG TGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAATGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCT AATAAACGGGTCGTGCTCTGTTCACGACTGCGTTGAAC ]
[+] EMBL BX606278 [ AATTTATCCCACTCCCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGAGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATACCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAACGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCACGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCT AAT AACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAAAAATAGCAAGTATGGACGAGTGCTTGCCGACGTACAGTGGTCTCCGGATGGAGAACATTTCGCACTCCTCGGTAACCGGGTGGTTGATATCATCAGTATCGAGACAACGCGTTCCGTTAGGTTGCTGGAGTATGATTCTAAACCTAGCGCCATGTGTTGGTTATCGGCTGAAGAAATTGCGGTTGGTTTGGAGAATGGAGCTCTAGTAATGGCCAACATCCAC]
[+] EMBL BM606181 [ TATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGGTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGAGCTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAATGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGC GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGC ]
[+] EMBL CNS08N6M [ TAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGA CTGATGATCGAATCTGCCTGCTGGACATGCGAGAGGGAACGAAGGTAACGGAGTTCCTGCATCACGATGGGACGATCAACGCACTTGTTTTCTCGGATGATGGCAGCCACCTCTTCTCCGGTAGCAATGACGGTAGTATGACGGCGATCAATATGTCCAAATTGGCCGTCGATAAGACGTGGAAAATCTGCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCTAAAT AACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAAAAATAGCAAGTATGGACGAGTGCTTGCCGACGTACAGTGGTCTCCGGATGGAGAACATTTCGCACTCCTCGGTAACCGGGTGGTTGATATCATCAGTATCGAGACAACGCGTTCCGTTAGGTTGCT ]
[+] EMBL CNS09437 [ GCCCACAAAACTGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGATATGACGCTAAAAACATGGGATCT AAT AACGGGTCGTGCTCTGTTCACGACTGCGTTGAACAAA ]
consensusID : consensus_8140#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[CTCAGCCAGAATCNCCCACGAGGTGTAAAACGCACGTTTTTCTGTTTACGCTACAGTTAAACTTAAAATATTTGTTCGTCCAAAGCAATTTATCCGTACTCTCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGCGGCTGATGATCGAATCTGCCTGTTGGACATGCGAGAGGGAACGAAGGTAGACGGAGTTCCTGCATCACGAGTGGAACGATGAACGCACTTGTTGTTCTCGGATGATGGGAGCCACCGTTTTCGTCCGGTAGCAACGACGGTGTAGTGACGGCGATCAAATATGTCCAAATANA]
[+] EMBL BX466549 [CTCAGCCAGAATCNCCCACGAGGTGTAAAACGCACGTTTTTCTGTTTACGCTACAGTTAAACTTAAAATATTTGTTCGTCCAAAGCAATTTATCCGTACTCTCACTGTCAGTTATTCATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTGGGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAGAAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTAGCTTCCCACGGCAGATATGTAGCTACTGGCGGCGGCTGATGATCGAATCTGCCTGTTGGACATGCGAGAGGGAACGAAGGTAGACGGAGTTCCTGCATCACGAGTGGAACGATGAACGCACTTGTTGTTCTCGGATGATGGGAGCCACCGTTTTCGTCCGGTAGCAACGACGGTGTAGTGACGGCGATCAAATATGTCCAAATANA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8140#1 CCGCCCACGCGTCCGCACAATAAATGTAAAAACGCTCGTTTTTCTATTTACGCTATAGTT 60
consensus_8140#2 -CTCAGCCAGAATCNCCCACGAGGTGTAAAA-CGCACGTTTTTCTGTTTACGCTACAGTT 58
consensus_8140#0 ------------------------------------------------------------
consensus_8140#1 AAACTTAAAATACTTGTTCGGTCAAAGCAATTTATCC-TACTCCCACTG-TCAG-TTATT 117
consensus_8140#2 AAACTTAAAATATTTGTTCGTCCAAAGCAATTTATCCGTACTCTCACTG-TCAG-TTATT 116
consensus_8140#0 -------------CCAAGAATCGGCACGAGGTTATCC-TACTCTCACTGGTCAGCTTATT 46
* * ****** ***** ***** **** *****
consensus_8140#1 CATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTG 177
consensus_8140#2 CATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTG 176
consensus_8140#0 CATTATATTGTTTTCAAAGCTTAGGGCATTTGGGTTATGGCTGGTTTGGAGATTTTGGTG 106
************************************************************
consensus_8140#1 GGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAG 237
consensus_8140#2 GGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAG 236
consensus_8140#0 GGAACGTACGAAGAGTTTATCGTATGTTACCGTGCGGAACCCTTACGAACGGACCCGGAG 166
************************************************************
consensus_8140#1 AAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTA 297
consensus_8140#2 AAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTA 296
consensus_8140#0 AAGCTATATCTTAAGGAATCGTTTGCTGCTCATCTGCACACCTCGTCTGTGCGATCGGTA 226
************************************************************
consensus_8140#1 GCTTCCCACGGCAGATATGTAGCTACTGGCGG-AGCTGATGATCGAATCTGCCTGCTGGA 356
consensus_8140#2 GCTTCCCACGGCAGATATGTAGCTACTGGCGGCGGCTGATGATCGAATCTGCCTGTTGGA 356
consensus_8140#0 GCTTCCCACGGCAGATATGTAGCTACTGGCGG-AGCTGATGATCGAATCTGCCTGTTGGA 285
******************************** ********************* ****
consensus_8140#1 CATGCGAGAGGGAACGAAGGTA-ACGGAGTTCCTGCATCACGA-TGGGACGATCAACGCA 414
consensus_8140#2 CATGCGAGAGGGAACGAAGGTAGACGGAGTTCCTGCATCACGAGTGGAACGATGAACGCA 416
consensus_8140#0 CATGCGAGAGGGAACGAAGGTG-ACGGAGTTCCTGCATCACGA-TGGAACGATAAACGCA 343
********************* ******************** *** ***** ******
consensus_8140#1 CTTGTT-TTCTCGGATGATGGCAGCCACCTCTTC--TCCGGTAGCAATGACGGTAGTATG 471
consensus_8140#2 CTTGTTGTTCTCGGATGATGGGAGCCACCGTTTTCGTCCGGTAGCAACGACGGTGTAGTG 476
consensus_8140#0 CTTGTT-TTCTCGGATGATGGGAGCCACCTTTTC--TCCGGTAGCAACGACGGTAGTATG 400
****** ************** ******* ** *********** ****** **
consensus_8140#1 ACGGCGATCAA-TATGTCCAAATTGGCCGTCGATAAGACGTGGAAAAGCGCCCACAAAAC 530
consensus_8140#2 ACGGCGATCAAATATGTCCAAATANA---------------------------------- 502
consensus_8140#0 ACGGCGATCAA-TATGTCCAAATTAGCCGTCGATAAGACGTGGAAAAGCGCCCACAAAAC 459
*********** ***********
consensus_8140#1 TGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGA 590
consensus_8140#2 ------------------------------------------------------------
consensus_8140#0 TGCTGTACAAAGTATCTCCATTCACCCTCATGGTAAGATGGCACTTTCATTGGGCAGCGA 519
consensus_8140#1 TATGACGCTAAAAACATGGGATCTAATAACGGGTCGTGCTCTGTTCACGACTGCGTTGAA 650
consensus_8140#2 ------------------------------------------------------------
consensus_8140#0 TATGACGCTTAAAACATGGGATCTAATAACGGGTCGTGCTCTGTTCACGACTGCGTTGAA 579
consensus_8140#1 CAAAAATAGCAAGTATGGACGAGTGCTTGCCGAC--GTACAGTGGTC-TCCGGATGGAGA 707
consensus_8140#2 ------------------------------------------------------------
consensus_8140#0 CAANAATAGCAAGTATGGACGAGTGCTTGCCCGACGGTACAGTGGTCCTCCGGATGGAGA 639
consensus_8140#1 ACATTTCGCACTCC-TCGGTAACCGGGT--GGTTGATATCATC-AGTATC--GAGACAAC 761
consensus_8140#2 ------------------------------------------------------------
consensus_8140#0 ACATTTCGCACTCCCTCGGTAACCCGGGTGGGTTGATATCATCCAGTATCCGAGAACAAC 699
consensus_8140#1 GCGTTCCGTTAGGTTG-CTGGAGTATGATTCTAAA-CCTAGCGCCATGTGTTGGTTATCG 819
consensus_8140#2 ------------------------------------------------------------
consensus_8140#0 GCGTTCCGTNAGGTTGGCTTAGGAGTTATTGGACTTCCGAAAGCCNTNAACCGGCCCATG 759
consensus_8140#1 GCTGAAGAAATTGCGGTTGGTTTGGAGAATGGAGCTCTA-GTAATGGCCAACATCCAC-- 876
consensus_8140#2 ------------------------------------------------------------
consensus_8140#0 GTTGGTTAGGGTAGATCCGGGCTTGAAAGNACAATTTTGCGCGGTTGGGTCTCGGGACGC 819
consensus_8140#1 ------------------------------------------------------------
consensus_8140#2 ------------------------------------------------------------
consensus_8140#0 CAATGGGAGCTCTTANGTTAATTGGGCCANGATCCACGAGAGAGGGANCCGGAGNAAAAG 879
consensus_8140#1 -------------------
consensus_8140#2 -------------------
consensus_8140#0 GCTGGGANANTCTACCGAT 898
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||