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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 813 fasta sequence
[CCGCGAGGTTAAACACACTCCCTCCATTTTTCGGCCAACCGCGGCATGTAAAATCAGGAAGTGCTGCGAGGAAGGAAAAGCGTTTGGGAAAAGCATCCGTGAACCACGATGGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGTCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAAGACGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATAAGGAGGTGCGCATGTTTCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGGCTGAACAAGACCAAGCGGGAGGAGACGGTCGACTTCCGGGCGGAGCGGGAAAAGCGGGACGCTCTGGAGCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCAGCGGGAGCT-GGAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCAGAACTCAAGAGCTACAATTCGCTGATGAAGCCGGAAAACATGACCTCCAACTATGACGCCGGCAACGATTCGGATGAGTTTATGTAAGGCGACGGAGGTGGCGCGGAGAGGAGAGAGATAACGAAACTGGGTCAAGCGGGGCGGAAGATTGCGGATTACGAATAA]
[+] EMBL BM612424 [CCGCGAGGTTAAACACACTCCCTCCATTTTTCGGCCAACCGCGGCATGTAAAATCAGGAAGTGCTGCGAGGAAGGAAAAGCGTTTGGGAAAAGCATCCGTGAACCACGATGGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGTCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGAC ]
[+] EMBL BM615111 [ ccgCGCGGCATGTAAAATCAGGAAGTGCTGCGAGGAAGGAAAAGCGTTTGGGAAAAGCATCCGTGAACCACGATGGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGTCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAAGACGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATTGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATAAGGAGGTGCGCATGTTCCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGACTGAACAAGACCAAGCGGGAGGAGACGGTCGACTTCCGGGCAGAGCGGGAAAAGCGGGACGCACTGGAGCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCAGCGGGAGCT GGAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCAGAACTCAAGAGCTACAATTCGCTGATGAAGCCGGAAAACATGACCT ]
[+] EMBL CNS08JBS [ ccGAAAAGCATCCGTGAACCACGATGGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGTCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAAGACGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATAAGGAGGTGCGCATGTTTCGGGTGGAAAAGCGCA CAACGAGATAGTGAACCGGCTGAACAAGACCAAGCGGGAGGAGACGGTCGACTTCCGGGCGGA CGGGAAAAGCGGGACGCTCTGGAGCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCAGCGGGA CTGGGAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCAGAACTCAAGAGCTACAATTCGCTaaaa ]
[-] EMBL CNS08JBT [ TCGTCGGCCCACGTGTA CTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAAGACGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATAAGGAGGTGCGCATGTTTCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGGCTGAACAAGACCAAGCGGGAGGAGACGGTCGACTTCCGGGCGGAGCGGGAAAAGCGGGACGCTCTGGAGCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCAGCGGGAGCT GGAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCAGTACTCAAGAGCTACAATTCGCTGATGAAGCCGGAAAACATGACCTCCAACTATGACGCCGGCAACGATTCGGATGAGTTTATGTAAGGCGACGGAGGTGGCGCGGAGAGGAGAGAGATAACGAAACTGGGTCAAGCGGGGCGGAAGATTGCGGATTACGAATAA]
[+] EMBL BX616568 [ CCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAAGACGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATTTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATAAGGAGGTGCGCATGTTTCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGGCTGAACAAGACCCAGCGGGAGGAGACGGTCGACTTCCGGGCGGAGCGGGAAAAGCGGGACGCTCT ]
consensusID : consensus_8156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence
[AGAATNGCCCGACGGTTTATACAGTACGAAAGTGAGTGTTTGTTGCTGCGCCCCCGGGGGTGTTCCGAATCGGTGACCACAAATTATTCACCGTTTTCTCTCTTCTCCAATCCACACACACACACACACACACACACACACACACACACACAGATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGATCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCTGTGCTGGAAGACAGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATANAGGACGGTGCGCATGTTTCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGGCTGAACAAGACCAAGCGGGAGGAGACGGTCGACATTCCGGGCGGAGCGGGAAAAGCGGGACGCTCTGGAGCGGGCCGACAAGAAGCGGATGGCCCGGGAGCAGACGGGAGCTGGCAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCCAGAACTCAAGAGCTAC]
[+] EMBL AL694297 [AGAATNGCCCGACGGTTTATACAGTACGAAAGTGAGTGTTTGTTGCTGCGCCCCCGGGGGTGTTCCGAATCGGTGACCACAAATTATTCACCGTTTTCTCTCTTCTCCAATCCACACACACACACACACACACACACACACACACACACACAGATGAGGACCTGATTCGATGGGGCTGGCCGGAGGATGTGTGGTTTCACGTGAACAAGGTCTCGATCGGCCCACGTGTACCTGCGGCTCGAGCCGGGCCAAACGCTGGACGACATACCGTCGGCCTGTGCTGGAAGACAGCCTGCCAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCGTGTACACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTGGGCCAGGTGGCGTTCCACCGCGATANAGGACGGTGCGCATGTTTCGGGTGGAAAAGCGCAGCAACGAGATAGTGAACCGGCTGAACAAGACCAAGCGGGAGGAGACGGTCGACATTCCGGGCGGAGCGGGAAAAGCGGGACGCTCTGGAGCGGGCCGACAAGAAGCGGATGGCCCGGGAGCAGACGGGAGCTGGCAGAAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCCAGAACTCAAGAGCTAC]
consensusID : consensus_8156#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[CCGAGGTTATCAGCGATTCCGAAAAGCATCCGTGAACACGATGTGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGTGTTGGACAAGTACGAAAATAGAGTGACCTGATTCGATGGGNGCTGGCCGGAGGATGTGTGGTTTCACTGTGAACAAGGTCTCGTCGTGCCCACGTGTACCTGCGGCTCTGAGCCTGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAACGACTGCCTGACAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCCGTGTACCACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTTGGGCCAGGTGGCTGTTCCACCGCGATAAGGAGGTGCGCATGTTCGGGTGGANAAAGCGCAGCCAACGAGATAGTGAACCGGCTGAACAAGGACCCAAGCCGGGAGGAGACAGGTCGACTTCCGGGCGGAGCGGGGAAAAGCGGGACGCTCTTGGAGCCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCCAGCGGGAGCTTGGCAGCAAAGAGGATCTGCAACGGCGGCAGGAAG]
[+] EMBL AL693104 [CCGAGGTTATCAGCGATTCCGAAAAGCATCCGTGAACACGATGTGTATTTTACTTCACCAGCAATGTCGTTCAGCCACCGGTGACCCTGTTCATGGGTGTTGGACAAGTACGAAAATAGAGTGACCTGATTCGATGGGNGCTGGCCGGAGGATGTGTGGTTTCACTGTGAACAAGGTCTCGTCGTGCCCACGTGTACCTGCGGCTCTGAGCCTGGGCCAAACGCTGGACGACATACCGTCGGCCGTGCTGGAACGACTGCCTGACAGCTGGTGAAGGCGAACAGCATCAACGGCAACAAGATGAACAACATCGACATCCGTGTACCACGATGTGGGACAATCTGAAGAAGACGCCCGCGATGGAGGTTGGGCCAGGTGGCTGTTCCACCGCGATAAGGAGGTGCGCATGTTCGGGTGGANAAAGCGCAGCCAACGAGATAGTGAACCGGCTGAACAAGGACCCAAGCCGGGAGGAGACAGGTCGACTTCCGGGCGGAGCGGGGAAAAGCGGGACGCTCTTGGAGCCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCCAGCGGGAGCTTGGCAGCAAAGAGGATCTGCAACGGCGGCAGGAAG]
consensusID : consensus_8156#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 497 fasta sequence
[TCACGGCAGAATCCGACGAGTGNATACAAAAACTAAACAACGTTTCCCCGATTCCTGACAAAGCATCCGTGAACACGATGGTATTTTACTTCACCAGCAATGTCGTTACAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAG-GACCTGATACGATGGGGCTGGCCTGGAGGATGTGTGGTTTCACGTGAACAAAGGGTCTCGTCGGCCACGTGTACCTGCGGCTCGAGCCGGGCAAACGCTGGACTGACTACTGTCGGCCCGTGCCTGGAAGACCTGCCCTGCAGGCTGGGTGAAGGGCGAACAGGCATCAACTGGCCAACAAGATTGAACCAAACAATCCGAAACATCCGTTGGTAACCACGGAATTGGTTNGTGGAACCAAAATCCTTGGAAAGGAAAAGAACCGGCCCCCGGCCGGAATTGGGGAAGGGTTGGGGCCCNAAGGGTTGGGGGCTGGTTTCCCCAACCCCGGGGGAATTAAA]
[+] EMBL BX466143 [TCACGGCAGAATCCGACGAGTGNATACAAAAACTAAACAACGTTTCCCCGATTCCTGACAAAGCATCCGTGAACACGATGGTATTTTACTTCACCAGCAATGTCGTTACAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAG GACCTGATACGATGGGGCTGG ]
[+] EMBL AL931053 [ gccgaggCTGA AAAGCAT CGTGAACACGATGGTATTTTACTTCACCAGCAATGTCGTT CAGCCACCGGTGACCCTGTTCATGGGGTTGGACAAGTACGAAAATGAGTGACCTGATTCGATGGGGCTGGCCTGGAGGATGTGTGGTTTCACGTGAACAAAGGGTCTCGTCGGCCACGTGTACCTGCGGCTCGAGCCGGGCAAACGCTGGACTGACTACTGTCGGCCCGTGCCTGGAAGACCTGCCCTGCAGGCTGGGTGAAGGGCGAACAGGCATCAACTGGCCAACAAGATTGAACCAAACAATCCGAAACATCCGTTGGTAACCACGGAATTGGTTNGTGGAACCAAAATCCTTGGAAAGGAAAAGAACCGGCCCCCGGCCGGAATTGGGGAAGGGTTGGGGCCCNAAGGGTTGGGGGCTGGTTTCCCCAACCCCGGGGGAATTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8156#0 CCGCGAGGTTAAACACACTCCCTCCATTTTTCGGCCAACCGCGGCATGTAAAATCAGGAA 60
consensus_8156#1 --------------AGAATNGCCCGACGGTTTA------TACAGTACG-AAAGTGAGTGT 39
consensus_8156#2 ------------------------------------------------------------
consensus_8156#3 -----------------------TCACGGCAGAA-----TCCGACGAGTGNATACAAAAA 32
consensus_8156#0 GTGCTGC-GAGGAAGGAAAAGCGTTTGGGAAAAGCATCCGTGAACCACGATGGTATTTTA 119
consensus_8156#1 TTGTTGCTGCGCCCCCGGGGGTGTTCCGAATCGGTGACCACAAATTATT-CACCGTTTTC 98
consensus_8156#2 --------CCGAGGTTATCAGCGATTCCGAAAAGCATCCGTGAACACGATGTGTATTTTA 52
consensus_8156#3 CTAA-ACAACGTTTCCCCGAT--TCCTGACAAAGCATCCGTGAAC-ACGATGGTATTTTA 88
* * ** ** ****
consensus_8156#0 CTTCACCAGCAATGTCGT-TCAGCCACCGGTGACCCTGTTCATGGGGTT-GGACAAGTAC 177
consensus_8156#1 TCTCTTCTCCAAT-CCAC-ACACACACA------CACACACACACACAC-ACACACACAC 149
consensus_8156#2 CTTCACCAGCAATGTCGT-TCAGCCACCGGTGACCCTGTTCATGGGTGTTGGACAAGTAC 111
consensus_8156#3 CTTCACCAGCAATGTCGTTACAGCCACCGGTGACCCTGTTCATGGGGTT-GGACAAGTAC 147
** * **** * ** *** * ** *** **
consensus_8156#0 GAAAATGAGG--ACCTGATTCGATGGGG-CTGGCCGGAGGATGTGTGGTTTCAC-GTGAA 233
consensus_8156#1 ACAGATGAGG--ACCTGATTCGATGGGG-CTGGCCGGAGGATGTGTGGTTTCAC-GTGAA 205
consensus_8156#2 GAAAATAGAGTGACCTGATTCGATGGGNGCTGGCCGGAGGATGTGTGGTTTCACTGTGAA 171
consensus_8156#3 GAAAATGAGG--ACCTGATACGATGGGGCTGGCCTGGAGGATGTGTGGTTTCAC-GTGAA 204
* ** * ******* ******* * * ******************* *****
consensus_8156#0 CAAGGTCTCG-TCGGCCCACGTGTACCTGCGGCTC-GAGCC-GGGCCAAACGCTGGACGA 290
consensus_8156#1 CAAGGTCTCGATCGGCCCACGTGTACCTGCGGCTC-GAGCC-GGGCCAAACGCTGGACGA 263
consensus_8156#2 CAAGGTCTCGTCGTGCCCACGTGTACCTGCGGCTCTGAGCCTGGGCCAAACGCTGGACGA 231
consensus_8156#3 CAAAGGGTCTCGTCGGCCACGTGTACCTGCGGCTC-GAGCC--GGGCAAACGCTGGACTG 261
*** * ** * ******************* ***** ** ************
consensus_8156#0 CATACCGTCGGCC-GTGCTGGAA-GAC---GCCTGCCAGCTGG-TGAAGG-CGAACAG-C 342
consensus_8156#1 CATACCGTCGGCCTGTGCTGGAA-GACA--GCCTGCCAGCTGG-TGAAGG-CGAACAG-C 317
consensus_8156#2 CATACCGTCGGCC-GTGCTGGAACGACT--GCCTGACAGCTGG-TGAAGG-CGAACAG-C 285
consensus_8156#3 ACTACTGTCGGCCCGTGCCTGGAAGACCTGCCCTGCAGGCTGGGTGAAGGGCGAACAGGC 321
*** ******* **** * * *** **** ***** ****** ******* *
consensus_8156#0 ATCAACGG--CAACAAGAT-GAAC--AACATC----GACATC-GT--GTA-C-ACGATGT 388
consensus_8156#1 ATCAACGG--CAACAAGAT-GAAC--AACATC----GACATC-GT--GTA-C-ACGATGT 363
consensus_8156#2 ATCAACGG--CAACAAGAT-GAAC--AACATC----GACATCCGT--GTA-CCACGATGT 333
consensus_8156#3 ATCAACTGGCCAACAAGATTGAACCAAACAATCCGAAACATCCGTTGGTAACCACGGAAT 381
****** * ********* **** **** ***** ** *** * *** *
consensus_8156#0 GGGACAATCTGAAGAAGACGCCCGCGATGGAGGT-GGGCCAGGTGGC-GTTCCACCGCGA 446
consensus_8156#1 GGGACAATCTGAAGAAGACGCCCGCGATGGAGGT-GGGCCAGGTGGC-GTTCCACCGCGA 421
consensus_8156#2 GGGACAATCTGAAGAAGACGCCCGCGATGGAGGTTGGGCCAGGTGGCTGTTCCACCGCGA 393
consensus_8156#3 TGGTTNGTGGAACCAAAATCCTTGGAAAGGAAAA-GAACCGGCCCCCGGCCGGAATTGGG 440
** * * ** * * * * *** * ** * * * * *
consensus_8156#0 TAAGGA--GGTGCGCAT---GTTTCGGGTGGAAAAGCGCAGC-AACGAGATAGTGAACCG 500
consensus_8156#1 TANAGGACGGTGCGCAT---GTTTCGGGTGGAAAAGCGCAGC-AACGAGATAGTGAACCG 477
consensus_8156#2 TAAGGA--GGTGCGCAT---GTTCGGGTGGANAAAGCGCAGCCAACGAGATAGTGAACCG 448
consensus_8156#3 GAAGGGTTGGGGCCCNAAGGGTTGGGGGCTGGTTTCCCCAACCCCGGGGGAATTAAA--- 497
* * ** ** * *** ** * ** * * * * * **
consensus_8156#0 GCTGAACAAGA--CCAAGC-GGGAGGAGAC-GGTCGAC-TTCCGGGCGGAGCGGG-AAAA 554
consensus_8156#1 GCTGAACAAGA--CCAAGC-GGGAGGAGAC-GGTCGACATTCCGGGCGGAGCGGG-AAAA 532
consensus_8156#2 GCTGAACAAGGACCCAAGCCGGGAGGAGACAGGTCGAC-TTCCGGGCGGAGCGGGGAAAA 507
consensus_8156#3 ------------------------------------------------------------
consensus_8156#0 GCGGGACGCTCT-GGAGC-GGGCCGACAAGAAGCGGCTGGCCCGGGAGCAG-CGGGAGCT 611
consensus_8156#1 GCGGGACGCTCT-GGAGC-GGGCCGACAAGAAGCGGATGGCCCGGGAGCAGACGGGAGCT 590
consensus_8156#2 GCGGGACGCTCTTGGAGCCGGGCCGACAAGAAGCGGCTGGCCCGGGAGCCAGCGGGAGCT 567
consensus_8156#3 ------------------------------------------------------------
consensus_8156#0 -GG-AG-AAGGAGGATCTGAAGCGGCGGCAGGAGGAGGC-AGAACTCAAGAGCTACAATT 667
consensus_8156#1 -GGCAG-AAGGAGGATCTGAAGCGGCGGCAGGAGGAGGCCAGAACTCAAGAGCTAC---- 644
consensus_8156#2 TGGCAGCAAAGAGGATCTGCAACGGCGGCAGGAAG------------------------- 602
consensus_8156#3 ------------------------------------------------------------
consensus_8156#0 CGCTGATGAAGCCGGAAAACATGACCTCCAACTATGACGCCGGCAACGATTCGGATGAGT 727
consensus_8156#1 ------------------------------------------------------------
consensus_8156#2 ------------------------------------------------------------
consensus_8156#3 ------------------------------------------------------------
consensus_8156#0 TTATGTAAGGCGACGGAGGTGGCGCGGAGAGGAGAGAGATAACGAAACTGGGTCAAGCGG 787
consensus_8156#1 ------------------------------------------------------------
consensus_8156#2 ------------------------------------------------------------
consensus_8156#3 ------------------------------------------------------------
consensus_8156#0 GGCGGAAGATTGCGGATTACGAATAA 813
consensus_8156#1 --------------------------
consensus_8156#2 --------------------------
consensus_8156#3 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||