|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1400 fasta sequence
[CCGCCCACGCGTCCGATCCTACAAACCTGCTAAACACTTAAGTTAAACTTAGTTAACCTTTAACGTAGTGCTCTAAGCTATCGTATAGTATTTTGAGGACAAAGGATCAAGTCAAATTTGCGTAGTAGTGAAGGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGTTGTACTATAGCGGAAAACTGCACACAAAAGGTGCCTCAAAGAGAAACTATAAAAGAGAAACTAGCGAAGATAAAGGGGCGAATGCGGATCACAGTTTTGGCACACAGAGAAAGAACCAAACCAAACAGAAAAAAGTGCGTGTTAAAGCAGACGGGTTGCCGTACTTTCTGCGTTCTAGGCTTAGAATGATAAGAATCCGTTCCGTTGTTTTTTTTT----TTATTT----TTTTAATAAAACAACAAACACAAACAGCTGCTCCGAAGTACGGTGCTATATAGAGACAAACATTTACACAATTTTTATCC--CACACACACACACACACAGACATCAAGTTCATGTACCAAATGCAATAAACACAAGATAAAACAATGGATAAAATTTAAAATGCATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGTCAAAAAAGGGTTAAAA-------CAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGGCAAGTAGACGTAGCCATCCCCATAAGAAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCGTTTTGTTTGTTTGAAATGTATTG-TTTGTTTTTTTCTTATCGT-TTT-TGTCTACGGGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTA-TGAA-AAGGGTTTAACA-A-AAAACCCTCCAATCGGTACATTAA-AAAAAAACTATTTAAATGCAGAAGTATTTGC-TAGAGCACCATA-TTGATCGGTAGGTAAAC-AGT---AAAAGCG-ATAAAACAGCAAGAANAGAACCACAGAGCAAGGCACAGGCANGGTATAAATANACAGTATTGAAAAACATACAAAACAAGCACAAGCTTTTGATCTGGGAGCAGCACNCACCCCCACCAANACAACTCAAAATCAACACCTTACACACTAGTACTAATCTAAACATATTGAGCTATGTCGGTATCATTANTGAATGTNCGNATAGGAATTGGGTGAACACTTAACCTAGNATACTGTGCAAANATTAACCGACACAACTACACAACGCAAAAACTAAAACCCGGTGGTGGCAACCGGTAGCAGGTTGACAGGCACCGAANTNTACCGCCACACANACGCCAGGGAAACACAA]
[+] EMBL BM654332 [CCGCCCACGCGTCCGATCCTACAAACCTGCTAAACACTTAAGTTAAACTTAGTTAACCTTTAACGTAGTGCTCTAAGCTATCGTATAGTATTTTGAGGACAAAGGATCAAGTCAAATTTGCGTAGTAGTGAAGGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGTTGTACTATAGCGGAAAACTGCACACAAAAGGTGCCTCAAAGAGAAACTATAAAAGAGAAACTAGCGAAGATAAAGGGGCGAATGCGGATCACAGTTTTGGCACACAGAGAAAGAACCAAACCAAGCAGAAAAAAGTGCGTGTTAAAGCAGACGGGTTGCCGTACTTTCTGCGTTCTAGGCTTATAATGATAAGAATCCGTT ]
[+] EMBL BM643912 [ ccGAGGGAGAAAGAGAGAGAGAGACGGTTGTACTATAGAGGAAAACTGCACACAAAAGGTGCAACAAAGAGAAACTAGAAAAGAGAAACTAGCGAAGAGAAAGGGGCGAATGTGGATCACAGTTTTGGCACACAGAGAAAGAACCAAACCAAACAGAAAAAAGTGCGTGTTAAAGCAGACGGGTTGCCGTACTTTCTGCGTTCTAGGCTTAGAATGATAAGAATCCGTTCCGTTGTTTTTTTTTATTCTTATTTTTACTTTTAATAAAACAACAAACACAAACAGCTGCTCCGAAGTACGGTGCTATATAGAGACAAACATTTACACAATTTTTATCC CACACACACACACACACAGACATCAAGTTCATGTACCAAATGCAATAAACACAAGATAAAACAATGGATAAAATTTAAAATGCATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGCCAAAAAAGGGTTAAAACAACTTGCAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGACAAGCAAACGTAGCCCTTAAGA AACCAAACAAAAAAACAACAACAACAACCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCGTTTTGTTTGTTTGAAATGTATTGTTTTTTTTTTTTCTTATCG ]
[+] EMBL BX624791 [ AGAAAGAACCAAACCAAACAGAAAAAAGTGCGTGTTAAAGCAGACGGGTTGCCGTACTTTCTGCGTTCTAGGCTTAGAATGATAAGAATCCGTTCCGTTGTTTTTTTTT TTGTTT TTTTAATAAAACAACAAACACAAACAGCTGCTCCGAAGTACGGTGCTATATAGAGACAAACATTTATACAATTTTTATCCCACACACACACACACACACAGACATCAAGTTCATGTACCAAATGCAATAAACACAAGATAAAACAATGGATAAAATTTAAAATGCATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGTCAAAAAAGGGTTAAAA CAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGGCAAGTAGACGTAGCCATCCCCATAAGAAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCGTTTTGTTTGTTTGAAATGTATTG TTTGTTTTTTTCTTATCGT TTT TGTCTACGGGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTA TGAA AAGGGTTTAACA A AAAACCCTCCAATCGGTACATTAA AAAAAAACTATTTAAATGCAGAAGTATTTGC TAGAG A CATA TTGATCGGTAGGTAAAC AGT AAAAGCG ATAA ]
[+] EMBL BM646526 [ ccgCAGACATCAAGTTCATGTACCAAATGCAATAAACACAAGATAAAACAATGGATAAAATTTAAAATGCATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGTCAAAAAAGGGTTAAAA CAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGGCAAGTAGACGTAGCCATCCCCATAAGAAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCGTTTTGTTTGTTTGAAATGTATTG TTTGTTTTTTTCTTATCGT TTT TGTCTACGGGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTA TGAA AAGGGTTTAACA A AAAACCCTCCAATCGGTACATTAA AAAAAAACTATTTAAA ]
[+] EMBL AL692842 [ cccganngTTTAAATGCATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGTCAAAAAAGGGTTAAAA CAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGGCAAGTAGACGTAGCCATCCCCATAAGAAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCG TTTG TTGTTTGAAATGTATTG TG TTTTTTCTTATCGTATTTNTGTCTACGGGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTATTGAACAAGGGTTTAACANACAAAACCCTCCAATCGGTACATTAACAAAAAAACTATTTAAATGCAGAAGTATTTGCGTAGAGCACCATATTTGATCGGTAGGTAAACNAGTCANAACAGCGCATAAAACAGCAAGAANAGAACCACAGAGCAAGGCACAGGCANGGTATAAATANACAGTATTGAAAAACATACAAAACAAGCACAAGCTTTTGATCTGGGAGCAGCACNCACCCCCACCAANACAACTCAAAATCAACACCTTACACACTAGTACTAATCTAAACATATTGAGCTATGTCGGTATCATTANTGAATGTNCGNATAGGAATTGGGTGAACACTTAACCTAGNATACTGTGCAAANATTAACCGACACAACTACACAACGCAAAAACTAAAACCCGGTGGTGGCAACCGGTAGCAGGTTGACAGGCACCGAANTNTACCGCCACACANACGCCAGGGAAACACAA]
[+] EMBL BX619018 [ CATTATATGCTTATAGAAAATTACTAAAACCGTATTATTCGTCAAAAAAGGGTTAAAA CAAAACTTGCAAATATGAAGATACAAAAACATACATGTAGCAAATCATATACCTTTTGTGTCGTAAGGGGCAAGTAGACGTAGCCATCCCCATA AAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAATGTTCGTTTTGTTTGTTTGAAATGTATTG TTTGTTTTTTTCTTATCGT TTT TGTCTTCGGGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTA TGAA AAGGGTTTAACA A AAAACCCTCCAATCGGTACATT A AAAAAAACTATTTAAATGCAGAAGTATTTGC TAGAGacat ]
consensusID : consensus_8179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 689 fasta sequence
[CCGCGACCAGTGAACACGGACAGTCGCTGCGTATCGAGCCGTTGTGCCGGGTGGCGTGAAATTTTGCAATCACCAGTCTCAACCTGTGTGTCTA--TGTCT--GT--ATGTGTGTGCGAGTGTAAGTGTGCGTGAAAGTTTTCCCAACAAGTGTTGAAAGTTGAAAAATCATTTCAGTATAAAAAATCAAAAAAGTGCTTGAAAAGAATCTGCTCCCCAAACATCACACAGGTGCAGTGCAGTGTGAAAAGAAGTGTTTCCCTTTACCTCCCCTGCTCCTACCCTGGTGTGTGTGTGTGTGCCAGGGCTGAAGAGCTTTTTTCTCTGTTCGGGTGTGCTGTTCTGCATCTTCCAGCGTCTTCCAGCTTCTAACAAGCGACGAACCGACCGCGCCAAACGATGAATCTTCGCGGCTGGGGTGCGGTGCAGCTTGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTATGAAAAGGGTTTAACAAAAAACCCTCCAATCGGTACATTAAAAAAAAACTATTTAAATGCAGAAGTATTTGCTAGAGACATATTGATCGGTAGGTAAACAGTAAAAGCGATAAAACAGCAAGAAAGAACCACAGAGCAAGGAAGGAAGGGATA]
[+] EMBL BM637647 [CCGCGACCAGTGAACACGGACAGTCGCTGCGTATCGAGCCGTTGTGCCGGGTGGCGTGAAATTTTGCAATCACCAGTCTCAACCTGTGTGTCTA TGTCT GT ATGTGTGTGCGAGTGTAAGTGTGCGTGAAAGTTTTCCCAACAAGTGTTGAAAGTTGAAAAATCATTTCAGTATAAAAAATCAAAAAAGTGCTTGAAAAGAATCTGCTCCCCAAACATCACACAGGTGCAGTGCAGTGTGAAAAGAAGTGTTTCCCTTTACCTCCCCTGCTCCTACCCTGGTGTGTGTGTGTGTGCCAGGGCTGAAGAGCTTTTTTCTCTGTTCGGGTGTGCTGTT ]
[+] EMBL BM649182 [ ACACGGACAGTCGCTGCGTATCGTGCCGTTGTGCCGGGTGGCGTGAAATTTTGCAATCACCAGTCTCAGCCTGTGTGTTTACGTGTCTACGTGGCTGTGTGTGCGAGTGTAAGTGTGCGTGAAAGTTTTCCCAACAAGTGTTGAAAGTTGAAAAATCATTTCAGTATAAAAAATCAAAAAAGTGCTTGAAAAGAATCTGCTCCCCAAACATCACACAGGTGCAGTGCAGTGTGAAAAGAAGTGTTTCCCTTTACCTCCCCTGCTCCTACCCTGGTGTGTGTGTGTGTGCCAGGGCTGAAGAGCTTTTTTCTCTGTTCGGTTGTGCTGTTCTGCATCTTCCAGCGTCTTCCAGCTTCTAACAAGCGACGAACCGACCGCGCCAAACGATGAATCTTCGCGGCTGGGGTGCGGTGCAGCTTGCACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCGCGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTATGAAAAGGGTTTAACAAAAAACCCTCCAATCGGTACATTAAAAAAAAACTATTTAAATGCAGAAGTATTTGCTAGAGACATATTGATCGGTAGGTAAACAGTAAAAGCGATAAAACAGCAAGAAAGAACCACAGA ]
[+] EMBL BX609904 [ GCGTATGAAAAGGGTGAAACAAAAAACCCTCCAACCGGTACATGAAAAAAAAACTATTTAAATGCAGAAGTATTTGCTAGAGACATATGGATCGGTAGGTAAACAGTAAAAGCGATAAAACAGCAAGAAAGAACCACAGAGCAAGGAAGGAAGGGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8179#0 CCGCCCACGCGTCCGATCCTACAAACCTGCTAAACACTTAAGTTAAACTTAGTTAACCTT 60
consensus_8179#1 ------------------------------------------------------------
consensus_8179#0 TAACGTAGTGCTCTAAGCTATCGTATAGTATTTTGAGGACAAAGGATCAAGTCAAATTTG 120
consensus_8179#1 ------------------------------------------------------------
consensus_8179#0 CGTAGTAGTGAAGGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGTTGTACTAT 180
consensus_8179#1 ------------------------------------------------------------
consensus_8179#0 AGCGGAAAACTGCACACAAAAGGTGCCTCAAAGAGAAACTATAAAAGAGAAACTAGCGAA 240
consensus_8179#1 ------------------------------------------------------------
consensus_8179#0 GATAAAGGGGCGAATGCGGATCACAGTTTTGGCACACAGAGAAAGAACCAAACCAAACAG 300
consensus_8179#1 ------------------------------------------------------------
consensus_8179#0 AAAAAAGTGCGTGTTAAAGCAGACGGGTTGCCGTACTTTCTGCGTTCTAGGCTTAGAATG 360
consensus_8179#1 ------------------------------------------------------------
consensus_8179#0 ATAAGAATCCGTTCCGTTGTTTTTTTTTTTATTTTTTTAATAAAACAACAAACACAAACA 420
consensus_8179#1 --------------------------------------CCGCGACCAGTGAACACGGACA 22
* ** ***** ***
consensus_8179#0 GCTGCTCCGAAGTACGGTGCTATATAGAG--ACAAACATTTACACAATTTTTATCCCACA 478
consensus_8179#1 GTCGCTGCGTATCGAGCCGTTGTGCCGGGTGGCGTGAAATTTTGCAATCACCAGTCTCAA 82
* *** ** * * * * * * * * * ** **** * * *
consensus_8179#0 CACACACACACACAGACAT-CAAGTTCATGTAC-CAAATGCAATAAACACAAGATAAAAC 536
consensus_8179#1 CCTGTGTGTCTATGTCTGTATGTGTGTGCGAGTGTAAGTGTGCGTGAAAGTTTTCCCAAC 142
* * * ** * ** ** * * ***
consensus_8179#0 AATGGATAAAATTTAAAA------TGCATTATATGCTTATAGAAAATTACTAAAACCGTA 590
consensus_8179#1 AAGTGTTGAAAGTTGAAAAATCATTTCAGTATAAAAAATCAAAAAAGTGCTTGAAAAGAA 202
** * * *** ** *** * ** **** * **** * ** ** * *
consensus_8179#0 TTATTCGTCAAAAAAGGGTTAAAACAAAACTTGCAA-ATATGAAGATACAAAAACATACA 649
consensus_8179#1 TCTGCTCCCCAAACATCACACAGGTGCAG--TGCAGTGTGAAAAGAAGTGTTTCCCTTTA 260
* * *** * * * **** * **** * * *
consensus_8179#0 TGTAGCAAATCATATACCTTTTGTGT-CGTAAGGGGCAAGTAGACGTAGCCATCCCCATA 708
consensus_8179#1 CCTCCCCTGCTCCTACCCTGGTGTGTGTGTGTGTGCCAGGGCTGAAGAGCTTTTTTC-TC 319
* * *** ***** ** * * ** * *** * * *
consensus_8179#0 AGAAAACAAAAAAACAACAACAACACCCAGAGCCTTTATCCTAACAGCCAGAGCAGAAAT 768
consensus_8179#1 TGTTCGGGTGTGCTGTTCTGCATCTTCCAGCGTCTTCCAGCTTCTAACAAGCGACGAACC 379
* * ** * **** * *** ** * * ** * ***
consensus_8179#0 GTTCGTTTTGTTTGTTTGAAATGTATTGTTTGTTTTTTTCTTATCGTTTTTGTCTACGGG 828
consensus_8179#1 GACCGCGCCAAACGATGAATCTTCGCGGCTGGGGTG--------CGGTGCAGCTT----G 427
* ** * * * * * * * * ** * * * *
consensus_8179#0 CACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCG 888
consensus_8179#1 CACAACCGATTCGCCATCTAAATGTTAACCAATGTAATCATGTTTTTACTGTGTGCAGCG 487
************************************************************
consensus_8179#0 CGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTATGAAAAGGGTT 948
consensus_8179#1 CGTGTAACAGAACGGTGCATCGCAAAACAAATTGTGCTATAGGTGCGTATGAAAAGGGTT 547
************************************************************
consensus_8179#0 TAACAAAAAACCCTCCAATCGGTACATTAAAAAAAAACTATTTAAATGCAGAAGTATTTG 1008
consensus_8179#1 TAACAAAAAACCCTCCAATCGGTACATTAAAAAAAAACTATTTAAATGCAGAAGTATTTG 607
************************************************************
consensus_8179#0 CTAGAGCACCATATTGATCGGTAGGTAAACAGTAAAAGCGATAAAACAGCAAGAANAGAA 1068
consensus_8179#1 CTAGAGA--CATATTGATCGGTAGGTAAACAGTAAAAGCGATAAAACAGCAAGAAA-GAA 664
****** ********************************************** ***
consensus_8179#0 CCACAGAGCAAGGCACAGGCANGGTATAAATANACAGTATTGAAAAACATACAAAACAAG 1128
consensus_8179#1 CCACAGAGCAAGG---AAGGAAGGGATA-------------------------------- 689
************* * * * ** ***
consensus_8179#0 CACAAGCTTTTGATCTGGGAGCAGCACNCACCCCCACCAANACAACTCAAAATCAACACC 1188
consensus_8179#1 ------------------------------------------------------------
consensus_8179#0 TTACACACTAGTACTAATCTAAACATATTGAGCTATGTCGGTATCATTANTGAATGTNCG 1248
consensus_8179#1 ------------------------------------------------------------
consensus_8179#0 NATAGGAATTGGGTGAACACTTAACCTAGNATACTGTGCAAANATTAACCGACACAACTA 1308
consensus_8179#1 ------------------------------------------------------------
consensus_8179#0 CACAACGCAAAAACTAAAACCCGGTGGTGGCAACCGGTAGCAGGTTGACAGGCACCGAAN 1368
consensus_8179#1 ------------------------------------------------------------
consensus_8179#0 TNTACCGCCACACANACGCCAGGGAAACACAA 1400
consensus_8179#1 --------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||