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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 853 fasta sequence
[AGATCGCCCGAGGNCAGCAAGTGGAAGAAGGAAACCAAAAACACGCACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG-AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG-TTCTGG---ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT-GGTCCGAG---GGTGG-CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGANGAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCAACCCGAACCTGCGCATCT-AAGAGATNTNGAGAGAGATAGAGAGAGAGAGTAACCCCAAGGGGGATGCATACNACCAACCAACTGACTGCTGCTGGNGATGCAACCCTTTTCTTANTTTCA]
[+] EMBL AL932885 [AGATCGCCCGAGGNCAGCAAGTGGAAGAAGGAAACCAAAAACACGCACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGGGAAACGGCCGA ]
[+] EMBL AL694829 [ ttGCCCGAGG TTCAAGTGGAAGAAGGAAA CAAAAACACGCACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGA CCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCGCAGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGNTTCTGG ACGGCCGAGCTGCAGAAGCTCG CCCGACGACCGTGCGCAA CAGAACGACTGGGTCCGAGCGCGTTGGNCGGCATCGGT AGCCGCAn ]
[+] EMBL BX621632 [ AAGAAGGAAACCAAAAACACGCACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGG ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT GGTCCGAG GGTGG CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGANGAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCAACCCGAACCTGCGCATCT AAGAGATNTNGAGAGAGATAGAGAGAGAGA ]
[+] EMBL BX624597 [ AAACACGCACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGG ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT GGTCCGAG GGTGG CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGT GGTGTGCGA GAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCA ]
[+] EMBL BX627275 [ CACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGG ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT GGTCCGAG GGTGG CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGANGAGAACGACGCCCTGCTG ]
[+] EMBL BX628581 [ TACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGG ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT GGTCCGAG GGTGG CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGANGAGAACGACGCCCT ]
[+] EMBL BX622092 [ ACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGG ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT GGTCCGAG GGTGG CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGAGAGTAACCCCAAGGGGGATGCATACNACCAACCAACTGACTGCTGCTGGNGATGCAACCCTTTTCTTANTTTCA]
consensusID : consensus_8182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[CATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCNGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCAAAAGTACATCTGGACCANCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTCTGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCCGAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTACNTCAAGTACAGNAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGAGAGTAACCCCAAGGGGGATGCATACAACCAAACCAACTGACTGCTGCTGGTGATGCAACCCTTTTCTTATTTCCACT]
[+] EMBL BX628073 [CATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCNGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCAAAAGTACATCTGGACCANCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTCTGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCCGAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTACNTCAAGTACAGNAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGAGAGTAACCCCAAGGGGGATGCATACAACCAAACCAACTGACTGCTGCTGGTGATGCAACCCTTTTCTTATTTCCACT]
consensusID : consensus_8182#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[CCACGAGTTAAGGGCCGGCAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTCTGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCCGAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGAGAGTAACCCAAGGGGGATGCATACAACCAACCAACTGACTGCTGCTGGTGATGCAACCCTTTTCTTATTTCCACTTGCGTTGGCGCATGGTTACACTGACATGATACATATTTATTTGAATTACCGTTTCG]
[+] EMBL AL692670 [CCACGAGTTAAGGGCCGGCAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTCTGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCCGAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGAGAGTAACCCAAGGGGGATGCATACAACCAACCAACTGACTGCTGCTGGTGATGCAACCCTTTTCTTATTTCCACTTGCGTTGGCGCATGGTTACACTGACATGATACATATTTATTTGAATTACCGTTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8182#0 AGATCGCCCGAGGNCAGCAAGTGGAAGAAGGAAACCAAAAACACGCACACACATTTTTCG 60
consensus_8182#1 ---------------------------------------------------CATTTTTCG 9
consensus_8182#2 ------------------------------------------------------------
consensus_8182#0 ATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCG 120
consensus_8182#1 ATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCG 69
consensus_8182#2 ------------------------------------------------------------
consensus_8182#0 GTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCG 180
consensus_8182#1 GTGGCCCTCGTCNGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCG 129
consensus_8182#2 ------------------------------------------------------------
consensus_8182#0 AATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTAC 240
consensus_8182#1 AATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGC--- 186
consensus_8182#2 ------------------------------------------------------------
consensus_8182#0 TTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGC 300
consensus_8182#1 ------------------------------------------------------------
consensus_8182#2 ------------------------------------------------------------
consensus_8182#0 AACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAG 360
consensus_8182#1 ------------------------------------------------------------
consensus_8182#2 ------------------------------------------------------------
consensus_8182#0 TGGATCAAGCAGAGAATCGTCGAGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTG 420
consensus_8182#1 -------------------------------AAAAGTACATCTGGACCANCGGACGGCTG 215
consensus_8182#2 -------------CCACGAGTTAAGGGCCGGCAAAGTACATCTGGACCAGCGGACGGCTG 47
***************** **********
consensus_8182#0 TGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTC 480
consensus_8182#1 TGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTC 275
consensus_8182#2 TGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTC 107
************************************************************
consensus_8182#0 TGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCC 540
consensus_8182#1 TGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCC 335
consensus_8182#2 TGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCC 167
************************************************************
consensus_8182#0 GAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCC 600
consensus_8182#1 GAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCC 395
consensus_8182#2 GAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCC 227
************************************************************
consensus_8182#0 TCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGAC 660
consensus_8182#1 TCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGAC 455
consensus_8182#2 TCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGAC 287
************************************************************
consensus_8182#0 GTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGANGAGAACGACGCCCTGCTGAAGTAC 720
consensus_8182#1 GTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTAC 515
consensus_8182#2 GTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTAC 347
*********************************** ************************
consensus_8182#0 GTCAAGTACAGCAACCCGAACCTGCGCATCTAA-GAGATNTNGAGAGAGATAGAGAGAGA 779
consensus_8182#1 NTCAAGTACAGNAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGA 575
consensus_8182#2 GTCAAGTACAGCAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGA 407
********** ********************* ***** * ******************
consensus_8182#0 GAGTAACCCCAAGGGGGATGCATACNACCAA-CCAACTGACTGCTGCTGGNGATGCAACC 838
consensus_8182#1 GAGTAACCCCAAGGGGGATGCATACAACCAAACCAACTGACTGCTGCTGGTGATGCAACC 635
consensus_8182#2 GAGTAACCC-AAGGGGGATGCATACAACCAA-CCAACTGACTGCTGCTGGTGATGCAACC 465
********* *************** ***** ****************** *********
consensus_8182#0 CTTTTCTTANTTTCA--------------------------------------------- 853
consensus_8182#1 CTTTTCTTATTTCCACT------------------------------------------- 652
consensus_8182#2 CTTTTCTTATTTCCACTTGCGTTGGCGCATGGTTACACTGACATGATACATATTTATTTG 525
********* ** **
consensus_8182#0 -------------
consensus_8182#1 -------------
consensus_8182#2 AATTACCGTTTCG 538
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||