cluster # 820

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Anopheles gambiae
cluster # 820 cluster # 820 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_820#0 length = 569 sequences # 1

consensus_820#1 length = 545 sequences # 1

consensusID : consensus_820#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence

                              [GGATTGTAAAACCAAAAATCTAGTTACGATAAATAAAGGTAGATTAAAGATTTTAAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCTGCTCAAAACTATTCTTGCGTACACGCAGCGCCAATCGAAAACTGCAATCGCAATGGCCCATTGGATTGGAATTGCTGCTCTGCTACTGACCGGTGGGACGTACACTACGCTCTACATTCAAGCTATCGCTCAACCTGGACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGNNAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTNCCCCCGCGAAATTTTTCCGGCGTGGCNCGCAACCGCTTGGGCCAGAATTTTGCATTTTGCTACTACCGTACATGTCAGTCCANNCGAGACACCTGAACTCAGT]

[+] EMBL BX619779             [GGATTGTAAAACCAAAAATCTAGTTACGATAAATAAAGGTAGATTAAAGATTTTAAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCTGCTCAAAACTATTCTTGCGTACACGCAGCGCCAATCGAAAACTGCAATCGCAATGGCCCATTGGATTGGAATTGCTGCTCTGCTACTGACCGGTGGGACGTACACTACGCTCTACATTCAAGCTATCGCTCAACCTGGACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGNNAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTNCCCCCGCGAAATTTTTCCGGCGTGGCNCGCAACCGCTTGGGCCAGAATTTTGCATTTTGCTACTACCGTACATGTCAGTCCANNCGAGACACCTGAACTCAGT]




>consensus_820#0
GGATTGTAAAACCAAAAATCTAGTTACGATAAATAAAGGTAGATTAAAGATTTTAAAACT
TAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAAC
AATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCA
CCGGCAAGTTGTTTCTGCTCAAAACTATTCTTGCGTACACGCAGCGCCAATCGAAAACTG
CAATCGCAATGGCCCATTGGATTGGAATTGCTGCTCTGCTACTGACCGGTGGGACGTACA
CTACGCTCTACATTCAAGCTATCGCTCAACCTGGACGCTAACAGTTGCTGTATGCTCCGT
ATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGNNAGC
GTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTNCCCCCGCGAAATTT
TTCCGGCGTGGCNCGCAACCGCTTGGGCCAGAATTTTGCATTTTGCTACTACCGTACATG
TCAGTCCANNCGAGACACCTGAACTCAGT

consensusID : consensus_820#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [GGCCGAGGGTACGATAATAAGGTAGATTACAGATTTTAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCCTGGTGGCAAGCTATCGCTCAACCTGAACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGAAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTTCCCCCGCGAAATTTTTCCGGCGTGGCCCGCAACCGCTTGGGCAAGAATTTGCATTTTGCTACTACCGTACATGTCAGTCCATTCGAGACACCTGAACTCAGTAATATTTCTCAGNCTTCAACACTTTTCTCTACTCTATTGATCAGACCATCCATCGTCANCAAACCTTATCGGTGTTTCTCTTCTATCTTGTCTTTATGCATGTTTGCG]

[+] EMBL AL933663             [GGCCGAGGGTACGATAATAAGGTAGATTACAGATTTTAAACTTAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCCTGGTGGCAAGCTATCGCTCAACCTGAACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGAAGCGTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTTCCCCCGCGAAATTTTTCCGGCGTGGCCCGCAACCGCTTGGGCAAGAATTTGCATTTTGCTACTACCGTACATGTCAGTCCATTCGAGACACCTGAACTCAGTAATATTTCTCAGNCTTCAACACTTTTCTCTACTCTATTGATCAGACCATCCATCGTCANCAAACCTTATCGGTGTTTCTCTTCTATCTTGTCTTTATGCATGTTTGCG]




>consensus_820#1
GGCCGAGGGTACGATAATAAGGTAGATTACAGATTTTAAACTTAAATCTGAGCTTAAAAC
TGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAACAATCCGGCGGAGAGGGGA
CACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCACCGGCAAGTTGTTTCCTG
GTGGCAAGCTATCGCTCAACCTGAACGCTAACAGTTGCTGTATGCTCCGTATACAGTCAG
CACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGAAGCGTCCATGAGAA
GCCCGTATGCTCTAGAACAGAGATGTCAAATTGTTCCCCCGCGAAATTTTTCCGGCGTGG
CCCGCAACCGCTTGGGCAAGAATTTGCATTTTGCTACTACCGTACATGTCAGTCCATTCG
AGACACCTGAACTCAGTAATATTTCTCAGNCTTCAACACTTTTCTCTACTCTATTGATCA
GACCATCCATCGTCANCAAACCTTATCGGTGTTTCTCTTCTATCTTGTCTTTATGCATGT
TTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_820#0      GGATTGTAAAACCAAAAATCTAGTTACGATAAATAAAGGTAGATTAAAGATTTTAAAACT 60
consensus_820#1      ---------------GGCCGAGGGTACGATAAT--AAGGTAGATTACAGATTTTAAA-CT 42
                                           * ********   *********** ********** **

consensus_820#0      TAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAAC 120
consensus_820#1      TAAATCTGAGCTTAAAACTGAGACCGCATTAAGCGCAATGTCACATTAAGCCGACAGAAC 102
                     ************************************************************

consensus_820#0      AATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCA 180
consensus_820#1      AATCCGGCGGAGAGGGGACACACATTCGAAAGCGCTTTTTCCTTAATGAACCTGGTGGCA 162
                     ************************************************************

consensus_820#0      CCGGCAAGTTGTTTCTGCTCAAAACTATTCTTGCGTACACGCAGCGCCAATCGAAAACTG 240
consensus_820#1      CCGGCAAGTTGTTTC--------------------------------------------- 177
                     ***************                                             

consensus_820#0      CAATCGCAATGGCCCATTGGATTGGAATTGCTGCTCTGCTACTGACCGGTGGGACGTACA 300
consensus_820#1      ---------------------------------------------CTGGTGG-------- 184
                                                                  * *****        

consensus_820#0      CTACGCTCTACATTCAAGCTATCGCTCAACCTGGACGCTAACAGTTGCTGTATGCTCCGT 360
consensus_820#1      --------------CAAGCTATCGCTCAACCTGAACGCTAACAGTTGCTGTATGCTCCGT 230
                                   ******************* **************************

consensus_820#0      ATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGNNAGC 420
consensus_820#1      ATACAGTCAGCACAGGCTGAATTGATGCGACATGCATCACTGTTCGTATGGAACGAA-GC 289
                     *******************************************************   **

consensus_820#0      GTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTNCCCCCGCGAAATTT 480
consensus_820#1      GTCCATGAGAAGCCCGTATGCTCTAGAACAGAGATGTCAAATTGTTCCCCCGCGAAATTT 349
                     ********************************************* **************

consensus_820#0      TTCCGGCGTGGCNCGCAACCGCTTGGGCCAGAATTTTGCATTTTGCTACTACCGTACATG 540
consensus_820#1      TTCCGGCGTGGCCCGCAACCGCTTGGGCAAGAATTT-GCATTTTGCTACTACCGTACATG 408
                     ************ *************** ******* ***********************

consensus_820#0      TCAGTCCANNCGAGACACCTGAACTCAGT------------------------------- 569
consensus_820#1      TCAGTCCATTCGAGACACCTGAACTCAGTAATATTTCTCAGNCTTCAACACTTTTCTCTA 468
                     ********  *******************                               

consensus_820#0      ------------------------------------------------------------
consensus_820#1      CTCTATTGATCAGACCATCCATCGTCANCAAACCTTATCGGTGTTTCTCTTCTATCTTGT 528
                                                                                 

consensus_820#0      -----------------
consensus_820#1      CTTTATGCATGTTTGCG 545