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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 947 fasta sequence
[TCGACCCACG-GTCCGCATTTCCGCACCGAAAAACACGCACCGACGA-GAAAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACCGAGTGTATTCTGCTCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCATTAGCTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTG-AAGAAAGGGTTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAACAGCCTGTTCCTGAGCGATCTCTACCCGGAGCGCGTCATACCGAATGCGGTCGAAAAGCAAAACATGACGGTCAAGCTGGACGCGTCCACGGTGGAGATTGAGGAGCGTGGCGTCAAGCTGCGGCTGACCGTCGTCGATACGCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTCAGCGCGATCCTCGAGTACATCGACGAACAGTACGAGCGGTTTCTGCGCGACGAAAGTGGCCTGAATCGGCGCAACATTGTCGACAACAGGATACACTGCTGCTTCTACTTCATCTCGCCGGTCGGCCATGGTATGAA]
[+] EMBL BM657123 [TCGACCCACGCGTCCGCATTTCCGCACCGAAAAACACGCACCGACGATTAAAGACGGACAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACCGAGTGTATTCTGCTCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGGGTGTC ]
[+] EMBL BM648042 [ CCGCATTTCCGCACCGAAAAACACGCACCGACGA GAAAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACCGAGTGTATTCTGCTCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTATCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCATTAACTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTGCAAGAAAGGGTTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAACAGCCTGGTCCTGAGCGATCTCTACCCG ]
[+] EMBL BM633596 [ CCG ATTTCCGCACCGAAAAACACGCACCGACGA GAAAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACCGAGTGTATTCTGCCCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTATGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCATTAGCTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGACCGTCG ]
[+] EMBL BM587780 [ ccgCGCGAAACGGAAAACCTCAAGCCGACCGAGTGTATTCTGCTCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCATTAGCTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTG AAGAAAGGGTTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAACAGCCTGTTCCTGAGCGATCTCTACCCGGAGCGCGTCATACCGAATGCGGTCGAAAAGCAAAACATGACGGTCAAGCTGGACGCGTCCACGGTGGAGAT ]
[+] EMBL BM577602 [ CCATTAGCCATTATCTATCCCTCTATGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTG AAGAAAGGGTTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAACAGCCTGTTCCTGAGCGATCTCTACCCGGAGCGCGTCATACCGAATGCGGTCGAAAAGCAAAACATGACGGTCAAGCTGGACGCGTCCACGGTGGAGATTGAGGAGCGTGGCGTCAAGCTGCGGCTGACCGTCGTCGATACGCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTCAGCGCGATCCTCGAGTACATCGACGAACAGTACGAGCGGTTTCTGCGCGACGAAAGTGGCCTGAATCGGCGCAACATTGTCGACAACAGGATACACTGCTGCTTCTACTTCATCTCGCCGGTCGGCCATGGTATGAA]
[+] EMBL AGA284780 [ CTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTG AAGAAAGGGTTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAACAGCCTGTTCCTGAGCGATCTCTACCCGGAGCGCGTCATACCGAATGCGGTCGAAAAGCAAAACATGACGGTCAAGCTGG ]
consensusID : consensus_8201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[CGCCCCGAGGNNNACATTTCCGCACCGAAAAACACGCACCGACGAGAAAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACGGAGTGTATTCTGCCCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCACTTAACTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTGAAGAAAGGGTTCGAGTTCACGCTGATGGT]
[+] EMBL AL930619 [CGCCCCGAGGNNNACATTTCCGCACCGAAAAACACGCACCGACGAGAAAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACGGAGTGTATTCTGCCCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTCTAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTGTCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACCCTGTTCGGAAGCCTTTTCCTGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCTGTTACGGCAAGGATTGACCATTAGCCACTTAACTAGCCCTCTAGGAGTGTGGTGTGACACACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCACAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTGAAGAAAGGGTTCGAGTTCACGCTGATGGT]
consensusID : consensus_8201#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence
[AATGCCGAGNNGAGATTGACATTAGCATTACTAACCTCTATGATGTTGTGTGCACACAGTGCTGCGAGCGTCTTGCGTTATTTGTTTGTTCGTGCGCCANTGGCACAAACAACGTCTCGACGATGTNCGATTCCGGCAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTTGGCAAACTGGCGAACAGTGNACCGGAAGTCGGTGAAAAAGGGTTCGAGTTCACGCTGATNGTCGTCGGGTGAGTCTGGNCTCGGTAAATCTACCCTGGTGTTGAACAGCCTGTTCCTNAGCTGATCTCTACCCGGAGCTGCGTCATACCGAATGCGGTCGAAAAGCCAAAACATGACGGTCAAGCTGGACGCGTCCACCGGTGGAGATTGAGTGAGCGTGGCGTCAAGCTGCTGTGCTTGACCGTCGTCGATACGCCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTCAGC]
[+] EMBL AL931202 [AATGCCGAGNNGAGATTGACATTAGCATTACTAACCTCTATGATGTTGTGTGCACACAGTGCTGCGAGCGTCTTGCGTTATTTGTTTGTTCGTGCGCCANTGGCACAAACAACGTCTCGACGATGTNCGATTCCGGCAGTCCTTTTCCAACGTGGAAACGTCCGGCTATGTCGGGTTTTGGCAAACTGGCGAACAGTGNACCGGAAGTCGGTGAAAAAGGGTTCGAGTTCACGCTGATNGTCGTCGGGTGAGTCTGGNCTCGGTAAATCTACCCTGGTGTTGAACAGCCTGTTCCTNAGCTGATCTCTACCCGGAGCTGCGTCATACCGAATGCGGTCGAAAAGCCAAAACATGACGGTCAAGCTGGACGCGTCCACCGGTGGAGATTGAGTGAGCGTGGCGTCAAGCTGCTGTGCTTGACCGTCGTCGATACGCCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTCAGC]
consensusID : consensus_8201#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 147 fasta sequence
[GGCCCCCAGGANTTTTGACATTTCCGCACCGAAAAACACGCAACCGGTACCGCACGAATAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACGGACTGTATTCTGGCCCATAGAAAAAGACAACAAGTCGAA]
[+] EMBL AL697598 [GGCCCCCAGGANTTTTGACATTTCCGCACCGAAAAACACGCAACCGGTACCGCACGAATAGACGGTCAATCGGTGCTGTGCCGCGAAACGGAAAACCTCAAGCCGACGGACTGTATTCTGGCCCATAGAAAAAGACAACAAGTCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8201#1 ----------------CGCCCCGAGGNNN----ACATTTCCGCACCGAAAAACACGCA-- 38
consensus_8201#3 ----------------GGCCCCCAGGANTTTTGACATTTCCGCACCGAAAAACACGCAAC 44
consensus_8201#0 ---------------TCGACCCACGGTCC----GCATTTCCGCACCGAAAAACACGCA-- 39
consensus_8201#2 AATGCCGAGNNGAGATTGACATTAGCATTACTAACCTCTATGATGTTGTGTGCACACAGT 60
* * * * * * * *** **
consensus_8201#1 -----CCGACGAGAAAGACGGTCAATCGGTGCTGTGCCGC-GAAACGGAAAACCTCAAGC 92
consensus_8201#3 CGGTACCGCACGAATAGACGGTCAATCGGTGCTGTGCCGC-GAAACGGAAAACCTCAAGC 103
consensus_8201#0 -----CCGACGAGAAAGACGGTCAATCGGTGCTGTGCCGC-GAAACGGAAAACCTCAAGC 93
consensus_8201#2 GCTGCGAGCGTCTTGCGTTATTTGTTTGTTCGTGCGCCANTGGCACAAACAACGTCTCGA 120
* * * * * * ** *** * ** * *** ** *
consensus_8201#1 CGACGGAGTGTATTC-TGCCCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTC 151
consensus_8201#3 CGACGGACTGTATTC-TGGCCCATAGAAAAAGACAA--CAAGTCGAA------------- 147
consensus_8201#0 CGACCGAGTGTATTC-TGCTCCAAAGAAAAAGACCAACCAAGTCGAAAACTGTGTGCGTC 152
consensus_8201#2 CGATGTNCGATTCCGGCAGTCCTTTTCCAACGTGGAAACGT-CCGGCTATGTCGGGTTTT 179
*** * ** ** * * * **
consensus_8201#1 TAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTG 211
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 TAACAAATATCTGTGCGCGTGTGTGTGTTTCCGGTGTGTGAGCGTGTGTGTCAGTGTGTG 212
consensus_8201#2 GGCAAACTGGCGAACAGTGNACCGGAAGTCGGTGAAAAAGGGTTCGAGTTCACGCTGATN 239
consensus_8201#1 TCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACC 271
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 TCCTTCGTCTCCCTTTAAACGGGGAACAATTTAGCTGTAAACTACCTACCTCCTCCCACC 272
consensus_8201#2 GTCGTCGGGTGAGTCTGGNCTCGGTAAATCTACCCTGGTGTTGAACAGCCTGTTCCTNAG 299
consensus_8201#1 CTGTTCGGAAGCCTTTTCC-TGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCT 330
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 CTGTTCGGAAGCCTTTTCC-TGCATGACCTTTTGTGAATCGTCGGAATCGTTGCGTTGCT 331
consensus_8201#2 CTGATCTCTACCCGGAGCTGCGTCATACCGAATGCGGTCGAAAAGCCAAAACATGACGGT 359
consensus_8201#1 GTTACGGCAAGGATTGACCATTAGCCACTTAACTAGCCCTCTAGGAGTGTGGTGTGACAC 390
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 GTTACGGCAAGGATTGACCATTAGCCA-TTAGCTAGCCCTCTAGGAGTGTGGTGTGACAC 390
consensus_8201#2 CAAGCTGGACGCGTCCACCGGTGGAGATTGAGTGAGCGTGGCGTCAAGCTGCTGTGCTTG 419
consensus_8201#1 ACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCA 450
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 ACAGTGCCTGCCGAGCGTCGTTGCCGCTTATTTGTTTTTGTTTCGTGCCGCCCACTGCCA 450
consensus_8201#2 ACCGTCGTCGATACGCCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTCAGC-- 477
consensus_8201#1 CAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCC 510
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 CAAACAACGTCGTCGACGATGTCCGATTCCGGCAAGTCCTTTTCCAACGTGGAAACGTCC 510
consensus_8201#2 ------------------------------------------------------------
consensus_8201#1 GGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTGAAGAAAGGG 570
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 GGCTATGTCGGGTTTGCCAACCTGCCGAACCAGGTGCACCGGAAGTCGGTGAAGAAAGGG 570
consensus_8201#2 ------------------------------------------------------------
consensus_8201#1 TTCGAGTTCACGCTGATGGT---------------------------------------- 590
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 TTCGAGTTCACGCTGATGGTCGTCGGTGAGTCTGGCCTCGGTAAATCTACCCTGGTGAAC 630
consensus_8201#2 ------------------------------------------------------------
consensus_8201#1 ------------------------------------------------------------
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 AGCCTGTTCCTGAGCGATCTCTACCCGGAGCGCGTCATACCGAATGCGGTCGAAAAGCAA 690
consensus_8201#2 ------------------------------------------------------------
consensus_8201#1 ------------------------------------------------------------
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 AACATGACGGTCAAGCTGGACGCGTCCACGGTGGAGATTGAGGAGCGTGGCGTCAAGCTG 750
consensus_8201#2 ------------------------------------------------------------
consensus_8201#1 ------------------------------------------------------------
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 CGGCTGACCGTCGTCGATACGCCCGGGTTCGGCGATGCCATCGATAACAGCGATAGCTTC 810
consensus_8201#2 ------------------------------------------------------------
consensus_8201#1 ------------------------------------------------------------
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 AGCGCGATCCTCGAGTACATCGACGAACAGTACGAGCGGTTTCTGCGCGACGAAAGTGGC 870
consensus_8201#2 ------------------------------------------------------------
consensus_8201#1 ------------------------------------------------------------
consensus_8201#3 ------------------------------------------------------------
consensus_8201#0 CTGAATCGGCGCAACATTGTCGACAACAGGATACACTGCTGCTTCTACTTCATCTCGCCG 930
consensus_8201#2 ------------------------------------------------------------
consensus_8201#1 -----------------
consensus_8201#3 -----------------
consensus_8201#0 GTCGGCCATGGTATGAA 947
consensus_8201#2 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||