cluster # 8209

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Anopheles gambiae
cluster # 8209 cluster # 8209 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8209#0 length = 640 sequences # 8

consensus_8209#1 length = 128 sequences # 1

consensusID : consensus_8209#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 640
fasta sequence

                              [ATGGTGAAGGAGCAGGAGGAGATGGTCGAACGGATCGATAGCAACCTGCAGGACGTGGAGCTGAACGTGGAGGCGGCCCACGGGGAAATTCTCAAATACTTCCAATCGGTCACGAAGAACCGTTGGCTGATGATCAAGATCTTTGGCGTGCTGATACTGTTTTTCATCTTTTTCGTTATCTTCCTAGCGTAGTGTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCACGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTATTTTTAGTAACAATTTTTATCCCATCGTCCCCACACGTTGGCTTGA------TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGAGGTGAAGTACGGCCGGGCGAAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTTAAACACAAAAAAAA]

[+] EMBL AGA285095            [ATGGTGAAGGAGCAGGAGGAGATGGTCGAACGGATCGATAGCAACCTGCAGGACGTGGAGCTGAACGTGGAGGCGGCCCACGGGGAAATTCTCAAATACTTCCAATCGGTCACGAAGAACCGTTGGCTGATGATCAAGATCTTTGGCGTGCTGATACTGTTTTTCATCTTTTTCGTTATCTTCCTAGCGTAGTGTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCACGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTATTTTTAGTAACAATTTTTATCCCATCGTCCCCACACGTTGGCTTGA      TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAAAACCTAGTGGCTTTTTGGCTTAGCGA                                                                                                                                                                                                                                ]
[+] EMBL BX625770             [                                     ATAGCAACCTGCANGACGTGGAGCTGAACGTGGANGCGGCCCACGGGGAAATTCTCANATACTTCCAATCNGTCACGAANAACCGTTGGCTGATGATCAANATCTTTGGCGNGCTGATACTGTTTTTCATCTTTTTCGNTATCTTCCTAGCGTAGTGTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCACGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTAT                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM627957             [                                                   ccgGTGGAGCTGAACGTGGAGGCGGCCCACGGGGAAATTCTCAAATACTTCCAATCGGTCACGAAGAACCGTTGGCTGATGATCAAGATCTTTGGCGTGCTGATACTGTTTTTCATCTTTTTCGTTATCTTCCTAGCGTAGTGTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCACGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTATTTTTAGTAACAATTTTTATCCCATTGTCCCCACACGTTGGCTTGATGGATGTGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGTGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGTGGTGAGGTACGGCCGGGCGGAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTTAAACACcagg    ]
[-] EMBL AGA283804            [                                                                                                                                                                                                 GTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCACGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTATTTTTAGTAACAATTTTTATCCCATCGTCCCCACACGTTGGCTTGA      TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGAGGTGAAGTACGGCCGGGCGAAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTTAAAAAAAA      ]
[+] EMBL AGA283978            [                                                                                                                                                                                                                                                                                                      tttTTTTTAACCCATCGTCCCCACACGTTGGCTTGA      TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCT TTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCACAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGCCGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGA                                                                                                ]
[-] EMBL AGA285274            [                                                                                                                                                                                                                                                                                                               TCCCATCGTCCCCACACGTTGGCTTGA      TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCT TTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTA                                                                                                          ]
[-] EMBL AGA284289            [                                                                                                                                                                                                                                                                                                            gaggCCCATCGTCCCCACACGTTGGCTTGA      TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGAGGTGAAGTACGGCCGGGCGAAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTTAAACACAAAAAA  ]
[+] EMBL AGA285593            [                                                                                                                                                                                                                                                                                                                         CCCACACGTTGGCTTGA      TGAATCCCGGGGAGCGACTGCAGGCGTCCTTCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATACGAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTTGGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGGAAGAGGTGAAGTACGGCCGGGCGAAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTTAAACACAAAAAAAA]




>consensus_8209#0
ATGGTGAAGGAGCAGGAGGAGATGGTCGAACGGATCGATAGCAACCTGCAGGACGTGGAG
CTGAACGTGGAGGCGGCCCACGGGGAAATTCTCAAATACTTCCAATCGGTCACGAAGAAC
CGTTGGCTGATGATCAAGATCTTTGGCGTGCTGATACTGTTTTTCATCTTTTTCGTTATC
TTCCTAGCGTAGTGTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCA
CGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTATTTTTAGTAACAATTT
TTATCCCATCGTCCCCACACGTTGGCTTGATGAATCCCGGGGAGCGACTGCAGGCGTCCT
TCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATAC
GAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTT
GGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGG
AAGAGGTGAAGTACGGCCGGGCGAAACATGTAACACACGTTGTCCTACGGGAGCAAAACA
ATATAATATATAAATTAAATCATTTTAAACACAAAAAAAA

consensusID : consensus_8209#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 128
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGCCCGTGGAAAGGCATGAGGTGAGGTACGGCCGGGCGGAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTT]

[+] EMBL BM586166             [CCGCCCACGCGTCCGCCCACGCGTCCGGGCCCGTGGAAAGGCATGAGGTGAGGTACGGCCGGGCGGAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAAATCATTTT]




>consensus_8209#1
CCGCCCACGCGTCCGCCCACGCGTCCGGGCCCGTGGAAAGGCATGAGGTGAGGTACGGCC
GGGCGGAACATGTAACACACGTTGTCCTACGGGAGCAAAACAATATAATATATAAATTAA
ATCATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8209#0      ATGGTGAAGGAGCAGGAGGAGATGGTCGAACGGATCGATAGCAACCTGCAGGACGTGGAG 60
consensus_8209#1      ------------------------------------------------------------
                                                                                  

consensus_8209#0      CTGAACGTGGAGGCGGCCCACGGGGAAATTCTCAAATACTTCCAATCGGTCACGAAGAAC 120
consensus_8209#1      ------------------------------------------------------------
                                                                                  

consensus_8209#0      CGTTGGCTGATGATCAAGATCTTTGGCGTGCTGATACTGTTTTTCATCTTTTTCGTTATC 180
consensus_8209#1      ------------------------------------------------------------
                                                                                  

consensus_8209#0      TTCCTAGCGTAGTGTGGGTCTGAAGGGGGGGTGATGGTTTTTGGTCGATTATTGCGCTCA 240
consensus_8209#1      ------------------------------------------------------------
                                                                                  

consensus_8209#0      CGGGAGCACACACACACACCATTGTATAGTTGAATTTTGTTCTATTTTTAGTAACAATTT 300
consensus_8209#1      ------------------------------------------------------------
                                                                                  

consensus_8209#0      TTATCCCATCGTCCCCACACGTTGGCTTGATGAATCCCGGGGAGCGACTGCAGGCGTCCT 360
consensus_8209#1      ------------------------------------------------------------
                                                                                  

consensus_8209#0      TCTGTTTTATTCTGGCATATTATATCCTAGAACCTAGTGGCTTTTTGGCTTAGCGAATAC 420
consensus_8209#1      ------------------------------------------------------------
                                                                                  

consensus_8209#0      GAATACGAAGTGCTAACGAATCCGGGGCTGGGCAGAAGTAAGTGTGGAGCTGTTACATTT 480
consensus_8209#1      ------------------------------------------------------------
                                                                                  

consensus_8209#0      GGGGGGGCGAGCGGACGGACGAAGATTGTGTATTACCGAAATCAATTGTTTGTATATAGG 540
consensus_8209#1      ---------------CCGCCCACG--CGTCCGCCCACGCGTCCGG--GCCCGTGGAAAGG 41
                                     * * * * *   **       **    *    *   **  * ***

consensus_8209#0      AA-GAGGTGAAGTACGGCCGGGCGAAACATGTAACACACGTTGTCCTACGGGAGCAAAAC 599
consensus_8209#1      CATGAGGTGAGGTACGGCCGGGCGGAACATGTAACACACGTTGTCCTACGGGAGCAAAAC 101
                       * ******* ************* ***********************************

consensus_8209#0      AATATAATATATAAATTAAATCATTTTAAACACAAAAAAAA 640
consensus_8209#1      AATATAATATATAAATTAAATCATTTT-------------- 128
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