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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 976 fasta sequence
[CCACAAACAAAAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGTCAAACGGTCGGTGTGGTCGGTGTGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG-ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCC-GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC-CAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAGGCCACATTTCCCCGAGCTTTTGTTTT]
[-] EMBL CNS093X1 [CCACAAACAAAAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGTCAAACGGTCGGTGTGGTCGGTGTGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGAAACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAAAAAAAAAAAGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGTTCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGCACAGCTACAACAAAaa ]
[-] EMBL CNS09C6Z [ GCGGAATTCCTCGAGCACTGTTGGCCTACTGGTCAAACGGTCGGTGTGGTCGGTGTGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATTTTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGTTCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTTAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAAACGCT ]
[+] EMBL CNS096L9 [ CTGGTC AACGACCGGTGTGGT GGTGTGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAGCACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAGGCCACATTTCC ]
[+] EMBL CNS093X0 [ GGTGTGGTCGGTGTGGTT AAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGTTTTTTTTTTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTTTTGTTTT]
[+] EMBL CNS09C6Y [ TGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGG AAAAAAAAAAAAAAAGGCCACA ]
[-] EMBL CNS096LA [ AAGCCGGATTTAGAGAAGAAATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTTGAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGACACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCCGGGTACGTCCGGTATGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGC GTTTAA ]
[+] EMBL BM613570 [ ccgATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAACAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTAATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTTCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCC GGTACGTCCGGTGTGAGCGTGAAATTGGCAAACTGGAAGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATA ]
[+] EMBL BM651204 [ TCCGGTGTGAGCGTGAAATTGGCAAACTGGAAGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAATCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGGCATCTTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGC CAGCTACGTCAAATAAA ]
consensusID : consensus_8215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[ACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCCGGTACGTCCGGTGTGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAATTTTCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGCCAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGCCCTCCCCCCCCC]
[+] EMBL CNS08JUX [ACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGAATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCATTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCTTCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCTCCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCCGGTACGTCCGGTGTGAGCGTGAAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCGTTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGTACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTGAACCGTTCGGTGGATTCATCAACTTCCCGACGAAATTTTCCAATTCCATCTCGGTGGTGTTCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGCCAGCTACGTCAAATAAAACGCTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGCCCTCCCCCCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8215#0 CCACAAACAAAAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGTCAAACGGTC 60
consensus_8215#1 ------------------------------------------------------------
consensus_8215#0 GGTGTGGTCGGTGTGGTTAAAAGGTTGGATCGAACGTTGAGAAGCCGAATTTAGAGAAGA 120
consensus_8215#1 ------------------------------------------------------------
consensus_8215#0 AATCATTGCGATTTATAAATGATCCTAGTGTATTTTGAAACAGACTTCATCGCTTTTCTT 180
consensus_8215#1 ------------------------------------------------------------
consensus_8215#0 GAGCGTTTTGAATATTTTACGAAAACATTCAAGAATTGTCTCTAAAAATCAATAAAAAAG 240
consensus_8215#1 ------------------------------------------------------------
consensus_8215#0 ACTCTGCTCTCGTTACCCAAATGTCAAAAGGCTTCCGATTGTACAGCTCAACAGGGGCGA 300
consensus_8215#1 ------------------------------------------------------------
consensus_8215#0 CACAGCTTCCCATTTCAAAACAACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGA 360
consensus_8215#1 ----------------------ACAATCCCTCTGCCTGCATGGCAAAAATCAAAACAAGA 38
**************************************
consensus_8215#0 ATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCA 420
consensus_8215#1 ATCATATTTGCTGAATTTTCCTCGCCAGCAGACACAGAACGATGTATCTAATATTCGTCA 98
************************************************************
consensus_8215#0 TTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCT 480
consensus_8215#1 TTTCCCTGCTGTCCTTGCTGATGGCGTTTGCATCAAAGATTACGAAAATGATCCTGCCCT 158
************************************************************
consensus_8215#0 TCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCT 540
consensus_8215#1 TCATATGCCGGGATAGTGCGGAAGTGATAGCGCGGAGGAAAGAAATAGCCAAATTACGCT 218
************************************************************
consensus_8215#0 CCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCCGGTACGTCCGGTATGAGCGTG 600
consensus_8215#1 CCGATCTGGCGAAAATTTCCATGCGCGACGAGTACACCCGGTACGTCCGGTGTGAGCGTG 278
*************************************************** ********
consensus_8215#0 AAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCG 660
consensus_8215#1 AAATTGGCAAACTGGAGGTGACGCTGAACGAGGCCAAAGGACGGGATGGTGTGAAGCGCG 338
************************************************************
consensus_8215#0 TTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGT 720
consensus_8215#1 TTGCGTACGAGTACGGACTGCACTACGGCGGGATGGCCGTGGTCGGGCTGTGCATGATGT 398
************************************************************
consensus_8215#0 ACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTG 780
consensus_8215#1 ACATTTCCATTTTCTACCGCTACTCCACCGTCATCGTGTTCGGCGACAACTTTAACTTTG 458
************************************************************
consensus_8215#0 AACCGTTCGGTGGATTCATCAACTTCCCGACGAAAGTGCCCAATTCCATCTCGGTGGTGT 840
consensus_8215#1 AACCGTTCGGTGGATTCATCAACTTCCCGACGAAATTTTCCAATTCCATCTCGGTGGTGT 518
*********************************** * *********************
consensus_8215#0 TCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGCCAGCTACGTCAAATAAAACG 900
consensus_8215#1 TCTGGATCGTGGTGAACAATTTCGTCGCCCGGACCCTGGCCAGCTACGTCAAATAAAACG 578
************************************************************
consensus_8215#0 CTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAA----------- 949
consensus_8215#1 CTCTCGAAACGCTCGCGGTGTAAGCTAACCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 638
*************************************************
consensus_8215#0 -GGCCACATTTCCCCGAGCTTTTGTTTT- 976
consensus_8215#1 AGGCCACATGTGCCCGCCCTCCCCCCCCC 667
******** * **** **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||