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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1483 fasta sequence
[CGGTGGTCGATGATTTGGATATGGATATGCCGAGCGACATTAGCTCGGAGCAAAAC-ACGA----ACCAGAATGTGGCGAACTTTA-TCAATAGCTACGTCCTCGACACGACCACGAATGCTGCCGGCGAGCTGGAACCGATCCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGCTCGACATTGGCCGGGAAGCGA-TAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCGGCGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCGCCTCGAAACCGATCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAACCTGGATGCACTGATCGCCCGCAGCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCACCTGTCGCCGTACTGGGCCTCCGATGAGGTGTTGAGTCAATTTCCCCCGACCAAGATACTGACCGTCGTGCTCGAT-CCCTGTCTGGATGAT-TGTGTGATGTTTGCCAAAAGACTGAAGAGCTTACACCGGTCCG-TTGCGCTTGACATTCTGCCCGGGCTGCCGCATGGA-TTCTTAAACTTTGCAACTATCTCCAAAGAA-GCGCACGATGGTTCGAAG-CTGTGCGTGAA-G-CGTATTGCCGAGCTGCTCGAAATACCGACCACGCTGGACGATCC-GGGCACGAAGCAGGGCTGCTGTTAGCGAAAATGCTGGTAAGGCAGTAGGGCGTCGTCGTCGGCTGCCAGGCATTGCCGCCACTCGACTGAAAACTGTTGTTCCGTAAAGCCAAACCAAAATTTGGAACCAAAACCAAGTAAACAACAGGCTCTAGAGGCTTTTATTTAGCTCAAATGAAACAAACAAGAGGCTCATACTCCTGGTGCATTACCGAACAACTCCAGAAAGTGTCCAGCGACGGAACCGAGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAACACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGCACCAACAAAACCAAAAGAAAAAGAAAAAACACTCAACCAAAACGCTCTGGCGTAGTTAACACGCGAGCATACATATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATATATACACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTACTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGCGTCGCGTTAGGAGAAGTTTGGAGAACAAGCGATAATCCACCGAAACCACCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTATCCTTTTACTTTTGNTATCCGTGCAACACGGGTGTTTTGTTAC]
[+] EMBL BX625663 [CGGTGGTCGATGATTTGGATATGGATATGCCGAGCGACATTAGCTCGGAGCAAAAC ACGA ACCAGAATGTGGCGAACTTTA TCAATAGCTACGTCCTCGACACGACCACGAATGCTGCCGGCGAGCTGGAACCGATCCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGCTCGACATTGGCCGGGAAGCGA TAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCGGCGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCGCCTCGAAACCGATCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAACCTGGATGCACTGATCGCCCGCAGCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCACCTGTCGCCGTACTGGGCCTCCGATGAGGTGTTGAGTCAATTTCCCCCGACCAAGATACTGACCGTCGTGCTCGAT CCCTGTCTGGATGAT TGTGTGATGTTTGCCAAAAGACTGAAGAGCTTACACCGGTCCG TTGCGCTTGACATTCTGCCCGGGCTGCCGCATGGA TTCTTAAACTTTGCAACTATCTCCAAAG ]
[+] EMBL AL697258 [ GCTC GAGCAGATCGCCGAGGTTAACAGAATGTGGCGAACTTTACTCAATAGCTACGTCCTCGACACGACCACGAATGCTGCCGGCGAGCTGGAACCGATCCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGCTCGACATTGGCCGGGAAGCGACTAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCGGCGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCG CTCGAAACCGATCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAA CTGGATGCACTGATCGCCCGCAGCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCA CTGTCGCCGTACTGGGCCTCCGATGAGGTGTTGAGTCAATTTCCCCCGA CAAGATACTGACCGTCGTGCTCGATACCCTGTCTGGATGATATGTGTGATGTTTG CAAAAGACTGAAGAGCTTACACCGGTCCGATTGCGCTTGACATTCTGGCCGGGCTGCCGCATGGACTTCTTAAACTTTGCAANTATCTCCAAAGAAGGCGCACGATGGTTCGAAGCCTGTGCGTGAACGCCGTATTGCCGAGCTGCTCGAAATACCGACCAAGCTGGACGATCCNGGGCACGAAa ]
[+] EMBL BX627104 [ CTGGAACCGATCCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGCTCGACATTGGCCGGGAAGCGA TAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCGGCGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCGCCTCGAAACCGATCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAACCTGGATGCACTGATCGCCCGCAGCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCACCTGTCGCCGTACTGGGCCTCCGATGAGGTGTTGAGTCAATTTCCCCCGACCAAGATACTGACCGTCGTGCTCGAT CCCTGTCTGGATGAT TGTGTGATGTTTGCCAAAAGACTGAAGAGCTTACACCGGTCCG TTGCGCTTGACATTCTGCCCGGGCTGCCGCATGGA TTCTTAAACTTTGCAACTATCTCCAAAGAA GCGCACGATGGTTCGAAG CTGTGCGTGAA G CGTATTGCCGAGCTGCTCGAAATACCGACCACGCTGGACGATCC GGGCACGAAGCAGGGCTGCTGTTAGCGAAAATGCTGGTAAGGCAGTAGGGCGTCGTCGTCGGCTGCCAGGCATTGCCGCCACTCGACTGAAAACTGTTGTTCCGTAAAGCCAA ]
[+] EMBL BX617684 [ GATTCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGCTCGACATTGGCCGGGAAGCGA TAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCTGCGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCGCCTCGAAACCGATCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAACCTGGATGCACTGATCGCCCGCAGCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCACCTGTCGCCGTACTGGGCCTCCGATGAGGTGTTGAGTCAATTTCCCCCGACCAAGATACTGACCGTCGTGCTCGAT CCCTGTCTGGATGAT TGTGTGATGTTTGCCAAAAGACTGAAGAGCTTACACCGGTCCG TTGCGCTTGACATTTTGCCCGGGCTGCCGCATGGA TTCTTAAACTTTGCTACTATCTCCAAAGAA GCGCACGATGGTTCGAAG CTGTGCGTGAA G CGTATTGCCGAGCTGCTCGAAATACCGACCACGCTGGACGATCC GGGCACGAAGCAAGGCTGCTGTTAGCGAAAATGCTGGTAAGGCAGTAGGGCGTCGTCGTCGGCTGCCAGGCATTGCCGC ]
[+] EMBL BX620642 [ GCAGTAGGGCGTCGTCGTCGGCTGCCAGGCATTGCCGCCACTCGACTGAAAACTGTTGTTCCGTAAAGCCCAACCAAAATTTGGAACCAAAACCAAGTAAACAACAGGCTCTAGAGGCTTTTATTTAGCTCAAATGAAACAAACAAGAGGCTCATACTCCTGGTGCATTACCGAACAACTCCAGAAAGTGTCCAGCGACGGAACCGAGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAACACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGCACCAACAAAACCAAAAGAAAAAGAAAAAACACTCAACCAAAACGCTCTGGCGTAGTTAACACGCGAGCATACATATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATATATACACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTACTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGCGTCGCGTTAGGAGAAGTTTGGAGAACAAGCGATAATCCACCGAAACCACCGGTGCTTGGGT ]
[+] EMBL BX628517 [ TTTAGCTCAAATGAAACAAACAAGAGGCTCATACTCCTGGTGCATTACCGAACAACTCCAGAAAGTGTCCAGCGACGGAACCGAGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAACACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGCACCAACAAAACCAAAAGAAAAAGAAAAAACACTCAACCAAAACGCTCTGGCGTAGTTAACACGCGAGCATACATATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATATATACACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTACTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGCGTCGCGTTAGGAGAAGTTTGGAGAACAAGCGATAATCCACCGAAACCACCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTATCCTTTTACTTTTGNTATCCGTGCAACACGGGTGTTTTGTTA ]
[+] EMBL AGA283189 [ ATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATATATACACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTACTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGCGTCGCGTTAGGAGAAGTTTGGAGAACAAGCGATAATCCACCGAAACCACCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTATCCTTTTACTTTTGTTATCCGTGCAACACGGTTGTTTTGTTAC]
consensusID : consensus_8222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence
[CCGCCCACGCGTCCGGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAAACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGTACCAACAAAACCAAAAGAAAAGGAAAAAATACTCAACCAAAACGCTCTGGCGTAGTGAACACGCGAGCATACTATGCATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTGCTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGTTGGAGAACAAGCGATAATCCACCGAAACCTGCCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTTTACTTTTGGTATCCGTGCAACACGGGTGTTTTGTTACAACAGAGTCTCGCTTTGTTGTGCCCCCTTTAC-AATACTATAATACTCCAACTGAATTGTGAACAAACAAGCAAACAATTGTCTCATTGTGGCTAGTGCAAGGA]
[+] EMBL BM585784 [CCGCCCACGCGTCCGGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAAACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGTACCAACAAAACCAAAAGAAAAGGAAAAAATACTCAACCAAAACGCTCTGGCGTAGTGAACACGCGAGCATACTATGCATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTGCTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGTTGGAGAACAAGCGATAATCCACCGAAACCTGCCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTTTACTTTTGGTATCCGTGCAACACGGGTGTTTTGTTACAACAGAGTCTCGCTTTGTTGTGCCCCCTTTAC AATACTATAATACTC ]
[+] EMBL BM645976 [ ccGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAAACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGTACCAACAAAACCAA AAAAGGAAAAAATACTCAACCAAAACGCTCTGGCGTAGTGAACACGCGAGCATACTATGCATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTGCTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGTTGGAGAACAAGCGATAATCCACCGAAACCTGCCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTTTACTTTTGTTATCCGTGCAACACGGTTGTTTTGTTACAACAGAGTCTCGCTTTGTTGTG CCCCTTTACAAATACTATAATACTCCAACTGAATTGTGAACAAACAAGCAAACAATTGTCTCATTGTGGCTAGTGCAAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8222#0 CGGTGGTCGATGATTTGGATATGGATATGCCGAGCGACATTAGCTCGGAGCAAAACACGA 60
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 ACCAGAATGTGGCGAACTTTATCAATAGCTACGTCCTCGACACGACCACGAATGCTGCCG 120
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 GCGAGCTGGAACCGATCCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGC 180
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 TCGACATTGGCCGGGAAGCGATAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCGG 240
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 CGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCGCCTCGAAACCGA 300
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 TCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAACCTGGATGCACTGATCGCCCGCA 360
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 GCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCACCTGTCGCCGTACTGGG 420
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 CCTCCGATGAGGTGTTGAGTCAATTTCCCCCGACCAAGATACTGACCGTCGTGCTCGATC 480
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 CCTGTCTGGATGATTGTGTGATGTTTGCCAAAAGACTGAAGAGCTTACACCGGTCCGTTG 540
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 CGCTTGACATTCTGCCCGGGCTGCCGCATGGATTCTTAAACTTTGCAACTATCTCCAAAG 600
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 AAGCGCACGATGGTTCGAAGCTGTGCGTGAAGCGTATTGCCGAGCTGCTCGAAATACCGA 660
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 CCACGCTGGACGATCCGGGCACGAAGCAGGGCTGCTGTTAGCGAAAATGCTGGTAAGGCA 720
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 GTAGGGCGTCGTCGTCGGCTGCCAGGCATTGCCGCCACTCGACTGAAAACTGTTGTTCCG 780
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 TAAAGCCAAACCAAAATTTGGAACCAAAACCAAGTAAACAACAGGCTCTAGAGGCTTTTA 840
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 TTTAGCTCAAATGAAACAAACAAGAGGCTCATACTCCTGGTGCATTACCGAACAACTCCA 900
consensus_8222#1 ------------------------------------------------------------
consensus_8222#0 GAAAGTGTCCAGCGACGGAACCGAGTGGACCCAAAGCACGTGCATAGAATGCGCAATACA 960
consensus_8222#1 --------CCGCCCACGCGTCCG-GTGGACCCAAAGCACGTGCATAGAATGCGCAATACA 51
** * *** *** ************************************
consensus_8222#0 CGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAACACAAACCGATTGGCCTTTGAT 1020
consensus_8222#1 CGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAA-ACAAACCGATTGGCCTTTGAT 110
************************************** *********************
consensus_8222#0 GCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTA 1080
consensus_8222#1 GCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTA 170
************************************************************
consensus_8222#0 CTATTATTGATGCACCTTTTTGCAATCAGCACCAACAAAACCAAAAGAAAAAGAAAAAAC 1140
consensus_8222#1 CTATTATTGATGCACCTTTTTGCAATCAGTACCAACAAAACCAAAAGAAAAGGAAAAAAT 230
***************************** ********************* *******
consensus_8222#0 ACTCAACCAAAACGCTCTGGCGTAGTTAACACGCGAGCATAC---ATATGGTGGGGCGTA 1197
consensus_8222#1 ACTCAACCAAAACGCTCTGGCGTAGTGAACACGCGAGCATACTATGCATGGTGGGGCGTA 290
************************** *************** *************
consensus_8222#0 ATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATATATAC 1257
consensus_8222#1 ATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATA----- 345
*******************************************************
consensus_8222#0 ACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTACTCTACGCGTTACCGATAT 1317
consensus_8222#1 -CAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTGCTCTACGCGTTACCGATAT 404
*************************************** *******************
consensus_8222#0 TCAAACTTAGTATGATTAATGTAAGAGCGTCGCGTTAGGAGAAGTTTGGAGAACAAGCGA 1377
consensus_8222#1 TCAAACTTAGTATGATTAATGTAAGAG------------------TTGGAGAACAAGCGA 446
*************************** ***************
consensus_8222#0 TAATCCACCGAAACC-ACCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTAT 1436
consensus_8222#1 TAATCCACCGAAACCTGCCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTAT 506
*************** *******************************************
consensus_8222#0 GTTATCCTTTTACTTTTGNTATCCGTGCAACACGGGTGTTTTGTTAC------------- 1483
consensus_8222#1 GTT------TTACTTTTGGTATCCGTGCAACACGGGTGTTTTGTTACAACAGAGTCTCGC 560
*** ********* ****************************
consensus_8222#0 ------------------------------------------------------------
consensus_8222#1 TTTGTTGTGCCCCCTTTACAATACTATAATACTCCAACTGAATTGTGAACAAACAAGCAA 620
consensus_8222#0 ------------------------------
consensus_8222#1 ACAATTGTCTCATTGTGGCTAGTGCAAGGA 650
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||