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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1582 fasta sequence
[AATTNCAGAGCCAGTTTATGAGCANCTCGATCGTGCGGGACGCGGCCGCCGGTGCCGCCCGTGCCTCCGTCTCGAGCACCCTGAACAGGTACTAGA------GGAGTGGCGCATTAGATATGCGTACGCCAATTTCCTCTTCCTCCTCCTCACTACTTTCATTGCTACTTCTACTTCTGAATTGCCAACACA---CCCCCCCCCCCCCCTCACACACACACAAACGCAATACGAACTGTTACGTTATTATTACTATTACTACTTACATCCCTATTACTCCCCTACAAAACAACTCGACATCAAGATCTACCGTGTTTAATTATCAGCACTACCACCTTCCTTTACCTCTTTTGCGAAACTCGTATGCTTCGAATGCTTCCATCCCGAAGCTTGTGTTGGGACATTACTTTCCATTATTATTCCCTGTTTCCCTTTTGCCGATGGACAGGCGGTGCGGCATAGATCTATGATGTCTCTATGATGTCCCCAAGCATACGAAAAAGTAAAAAAATCGATCAAAAATAGAACGTTTCGCAATTCGTGCTGCTTTAGCAGAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGACCTTATTTCCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATCCGTTATATTGTAGTGCCTTACATATTTTGTTTCGGGGGAAGCGCGACTTTCTTTTTCTTTGTTATGTTTAATCGTTGCTTTTTGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCCTTTTTTCATTCGATGTTTTGATTTACCGTTCTATTGTGACCTGTCTGTGGTGCGGTTCTCCAACACTTTTGTCTGGTGTTTGGTGTTACTACGGCCGTACGTAATATAACTAACAGGCAGATAAAAAATGGAGTAAAATGTAAATGGCAATGCACGATAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGCGGAACGGAGTAAGGAAGTGGCGTTTAACGATGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAGTTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTAGCTCCCGAGCGCATTAAAGATTGATTCATTAGTTTAGGCAAAGCAGACAGAAAAACAAATCCATCAATAAATAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGGAAAGTGACTGTTTAAGTATGTTTAAATTAAAAAAAAAACAACAACTATTTGAGCTAATAGTGTGCAAAATTGGGACGCCGCGGCACGGAATGACGGGTGCGGATGAGATAAAAGCCACGCTGCACGAATCATTATCATGGAAAACTTTACTTATGATTTATATTTATCTTAGATTTACGATGACGTGACCGAGAGATAAAACCGAAAACACTATTACACGAA]
[+] EMBL BX627803 [AATTNCAGAGCCAGTTTATGAGCANCTCGATCGTGCGGGACGCGGCCGCCGGTGCCGCCCGTGCCTCCGTCTCGAGCACCCTGAACAGGTACTAGAGGAGTGGGAGTGGCGCATTAGATATGCGTACGCCAATTTCCTCTTCCTCCTCCTCACTACTTTCATTGCTACTTCTACTTCTGAATTGCCAACACA CCCCCCCCCCCCCCTCACACACACACAAACGCAATACGAACTGTTACGTTATTATTACTATTACTACTTACATCCCTATTACTCCCCTACAAAACAACTCGACATCAAGATCTACCGTGTTTAATTATCAGCACTACCACCTTCCTTTACCTCTTTTGCGAAACTCGTATGCTTCGAATGCTTCCATCCCGAAGCTTGTGTTGGGACATTACTTTCCATTATTATTCCCTGTTTCCCTTTTGCCGATGGACAGGCGGTGCGGCATAGATCTATGATGTCTCTATGATGTCCCCAAGCATACGAAAAAGTAAAAAAATCGATCAAAAATAGAACGTTTCGCAATTCGTGCTGCTTTAGCAGAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGACCTTATTTCCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATC ]
[+] EMBL BX607194 [ ATCGTGCGGGACGCGGCCGCCGGTGCCGCCCGTGCCTCCGTCTCGAGCACCCTGAACAGGTACTAGA GGAGTGGCGCATTAGATATGCGTACGCCAATTTCCTCTTCCTCCTCCTCACTACTTTCATTGCTACTTCTACTTCTGAATTGCCAACACACCCCCCCCCCCCCCCCCTCACACACACACAAACGCAATACGAACTGTTACGTTATTATTACTATTACTACTTACATCCCTATTACTCCCCTACAAAACAACTCGACATCAAGATCTACCGTGTTTAATTATCAGCACTACCACCTTCCTTTACCTCTTTTGCGAAACTCGTATGCTTCGAATGCTTCCATCCCGAAGCTTGTGTTGGGACATTACTTTCCATTATTATTCCCTGTTTCCCTTTTGCCGATGGACAGGCGGTGCGGCATAGATCTATGATGTCTCTATGATGTCCCCAAGCATACGAAAAAGTAAAAAAATCGATCAAAAATAGAACGTTTCGCAATTCGTGCTGCTTTAGCAAAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGACCTTATTTTCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATCCGTTATATTGTAGTGCCTTACATATTTTGTTTCGGGGGAAGCGCGACT ]
[+] EMBL BX626926 [ TTGCGAAACTCGTATGCTTCGAATGCTTCCATCCCGAAGCTTGTGTTGGGACATTACTTTCCATTATTATTCCCTGTTTCCCTTTTGCCGATGGACAGGCGGTGCGGCATAGATCTATGATGTCTCTATGATGTCCCCAAGCATACGAAAAAGTAAAAAAATCGATCAAAAATAGAACGTTTCGCAATTCGTGCTGCTTTAGCAAAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGACCTTATTTTCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATCCGTTATATTGTAGTGCCTTACATATTTTGTTTCGGGGGAAGCGCGACTTTCTTTTTCTTTGTTATGTTTAATCGTTGCTTTTTGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCCTTTTTTCATTCGATGTTTTGATTTACCGTTCTATTGTGACCTGTCTGTGGTGCGGTTCTCCAACACTTTTGTCTGGTGTTTGGTGTTACTACGGCCGTACGTAATATAACTCACAGGCAAATAAAAAATGGAGTAAAATGTAAATGGCAATGCACGCTAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGCGGAACGGAGTAAGGAAGTGGCGTTTAACGATGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAA ]
[+] EMBL BM638646 [ ccgTCAAAAATAGAACGTTTCGCAATTCGTGCTGCTTTAGCAGAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGACCTTATTTCCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATCCGTTATATTGTAGTGCCTTACATATTTTGTTTCGGGGGAAGCGCGACTTTCT TTTGTTATGTTTAATCGTT C GATAGGAAAAAGGTAGTGCACGGTGGTGACCACCTATCCTTTTTTCATTCGATGTTTTGATTTACCGTTCTATTGTGACCTGTCTGTGGTGCGGTTCTCCAACACTTTTGTCTGGTGTTTGGTGTTACTACGGCCGTACGTAATATAACTAACAGGCAGAT AAAAATGGAGTAAAATGTAAATGGCAATGCACGATAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGCGGAACGGAGTAAGGAAGTGGCGTTTAACGATGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAGTTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGT ]
[+] EMBL BX623979 [ GGTGTTACTACGGCCGTACGTAATATAACTAACAGGCAGATAAAAAATGGAGTAAAATGTAAATGGCAATGCACGATAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGCGGAACGGAGTAAGGAAGTGGCGTTTAACGATGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAG TTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTAGCTCCCGAGCGCATTAAAGATTGATTCATTAGTTTAGGCAAAGCAGACAGAAAAACAAATCCATCAATAAATAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGGAAAGTGACTGTTTAAGTATGTTTAAATTAAAAAAAAAACAACAACTATTTGAGCTAATAGTGTGCAAAATTGGGACGCCGCGGCACGGAATGACGGGTGCGGATGAGATAAAAGCCACGCTGCACGAATCATTATCATGGAAAACTTTACTTATGATTTATATTTATCTTAGATTTACGATGACGTGACCGAGAGATAAAACCGAAAACACTATTACACGAA]
[+] EMBL BX628043 [ ATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAGTTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTAGCTCCCGAGCGCATTAAAGATTGATTCATTAGTTTAGGCAAAGCAGACAGAAAAACAAATCCATCAATAAATAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGGAAAGTGACTGTTTAAGTATGTTTAAATTAAAAAAAAAACAACAACTATTTGAGCTAATAGTGTGCAAAATTGGGACGCCGCGGCACGGAATGACGGGTGCGGATGAGATAAAAGCCACGCTGCACGAATCATTATCATGGAAAACTTTACTTATGATTTATATTTATCTTAGATTTACGATGACGTGACCGAGAGATAAAACCGAAAACACTATTA ]
[+] EMBL AGA281600 [ tTTTTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTAGCTCCCGAGCGCATTAAAGATTGATTCATTAGTTTAGGCAAAGCAGACAGAAAAACAAATCCATCAATAAATAAAGCGGCAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGGAAAGTGACTGTTTAAGTATGTTTAAATTAAAAAAAAAACAACAACTATTTGAGCTAATAGTGTGCAAAATTGGGACGCCGCGGCACGGAATGACGGGTGCGGATGAGATAAAAGCCACGCTGCACGAATCATTATCATGGAAAACTTTACTTATGATTTATATTTATCTTAGATTTACGAT ]
[-] EMBL AGA283192 [ TTATNATTTATATTTATWTTAGATTTACGATGACGTGACCGAGAGATAAAAaaaaaa ]
consensusID : consensus_8232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[ATCGTTGCTTTTCGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCCTTTTTTCATTCGATGTTTTGATTTACCGTTCTATTATGACCTGTCTGTGGTGCGGTTCTCCAACACTTTTGTCTGGTGTTTGGCGTTACTACGGCCGTACGTAATATAACTAACAGGCAGATAAAAAAGGAGTAAAATGTAGATGTCAATGCACGCTAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGGCATTGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAGTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTCCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTTGCTCCCGAGCGCATAAAAGATTGATTCATTCGTTTAGGCAAAGCAGACAGAAATACAAATCCATCAGTAAATAGCGTTTTAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGTAGAGTGACTGTTTAAGTATGTTTAAAAAAAAA]
[-] EMBL BX622335 [ATCGTTGCTTTTCGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCCTTTTTTCATTCGATGTTTTGATTTACCGTTCTATTATGACCTGTCTGTGGTGCGGTTCTCCAACACTTTTGTCTGGTGTTTGGCGTTACTACGGCCGTACGTAATATAACTAACAGGCAGATAAAAAAGGAGTAAAATGTAGATGTCAATGCACGCTAATCATCGGTCTCATTCAATTCCGTCACTTAACCAAAGGCATTGGGCATTGCTGTTGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTACGTTAACAGTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGGGTCGCGCCTTTCCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTTGCTCCCGAGCGCATAAAAGATTGATTCATTCGTTTAGGCAAAGCAGACAGAAATACAAATCCATCAGTAAATAGCGTTTTAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAATTTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGTAGAGTGACTGTTTAAGTATGTTTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8232#0 AATTNCAGAGCCAGTTTATGAGCANCTCGATCGTGCGGGACGCGGCCGCCGGTGCCGCCC 60
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 GTGCCTCCGTCTCGAGCACCCTGAACAGGTACTAGAGGAGTGGCGCATTAGATATGCGTA 120
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 CGCCAATTTCCTCTTCCTCCTCCTCACTACTTTCATTGCTACTTCTACTTCTGAATTGCC 180
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 AACACACCCCCCCCCCCCCCTCACACACACACAAACGCAATACGAACTGTTACGTTATTA 240
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 TTACTATTACTACTTACATCCCTATTACTCCCCTACAAAACAACTCGACATCAAGATCTA 300
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 CCGTGTTTAATTATCAGCACTACCACCTTCCTTTACCTCTTTTGCGAAACTCGTATGCTT 360
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 CGAATGCTTCCATCCCGAAGCTTGTGTTGGGACATTACTTTCCATTATTATTCCCTGTTT 420
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 CCCTTTTGCCGATGGACAGGCGGTGCGGCATAGATCTATGATGTCTCTATGATGTCCCCA 480
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 AGCATACGAAAAAGTAAAAAAATCGATCAAAAATAGAACGTTTCGCAATTCGTGCTGCTT 540
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 TAGCAGAACAGTTCTAAGATTCCCGTTTGCTCCCTTATGGTATTAGATGTTTAGTAGTGA 600
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 CCTTATTTCCCCCCCCTTTTTGCTAGTAGTAATCTTTCACAACTTCCTGACGCGAATCCG 660
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 TTATATTGTAGTGCCTTACATATTTTGTTTCGGGGGAAGCGCGACTTTCTTTTTCTTTGT 720
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 TATGTTTAATCGTTGCTTTTTGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCC 780
consensus_8232#1 --------ATCGTTGCTTTTCGATAGGGAAAAGGTAGTGCACGGTGGTGACCACCTATCC 52
************ ***************************************
consensus_8232#0 TTTTTTCATTCGATGTTTTGATTTACCGTTCTATTGTGACCTGTCTGTGGTGCGGTTCTC 840
consensus_8232#1 TTTTTTCATTCGATGTTTTGATTTACCGTTCTATTATGACCTGTCTGTGGTGCGGTTCTC 112
*********************************** ************************
consensus_8232#0 CAACACTTTTGTCTGGTGTTTGGTGTTACTACGGCCGTACGTAATATAACTAACAGGCAG 900
consensus_8232#1 CAACACTTTTGTCTGGTGTTTGGCGTTACTACGGCCGTACGTAATATAACTAACAGGCAG 172
*********************** ************************************
consensus_8232#0 ATAAAAAATGGAGTAAAATGTAAATGGCAATGCACGATAATCATCGGTCTCATTCAATTC 960
consensus_8232#1 ATAAAAAA-GGAGTAAAATGTAGATGTCAATGCACGCTAATCATCGGTCTCATTCAATTC 231
******** ************* *** ********* ***********************
consensus_8232#0 CGTCACTTAACCAAAGCGGAACGGAGTAAGGAAGTGGCGTTTAACGATGGGCATTGCTGT 1020
consensus_8232#1 CGTCACTTAACCAAAG---------------------------GCATTGGGCATTGCTGT 264
**************** * *************
consensus_8232#0 TGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTAC 1080
consensus_8232#1 TGAGCAATGGAAATGAATTAACGTTTACACCACTGCGCCACGTGCTGTTAACACGTTTAC 324
************************************************************
consensus_8232#0 GTTAACAGTTTTTTTTTCTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGG 1140
consensus_8232#1 GTTAACAGTTTTTTTT-CTTCTTTTTTTTCTACTAACTTTATGTGATCATGATTGGGAGG 383
**************** *******************************************
consensus_8232#0 GTCGCGCCTTTTCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTAGCTCCCGAG 1200
consensus_8232#1 GTCGCGCCTTTCCTTTCTGCTATTAATGCAACACGTTTGAGTTGAATGTTTGCTCCCGAG 443
*********** ************************************** *********
consensus_8232#0 CGCATTAAAGATTGATTCATTAGTTTAGGCAAAGCAGACAGAAAAACAAATCCATCAATA 1260
consensus_8232#1 CGCATAAAAGATTGATTCATTCGTTTAGGCAAAGCAGACAGAAATACAAATCCATCAGTA 503
***** *************** ********************** ************ **
consensus_8232#0 AATA--------AAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAAT 1312
consensus_8232#1 AATAGCGTTTTAAAGCGGTAGGGCTCGCGGCATTGCTGTTTCTCCGCAATTCACAGCAAT 563
**** ************************************************
consensus_8232#0 TTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGGAAAGTGACTGTT 1372
consensus_8232#1 TTATATGATGCAGTCGATGCAGTTAGGCGATGAGTCCATGAGTGTAGTAGAGTGACTGTT 623
*********************************************** * **********
consensus_8232#0 TAAGTATGTTTAAATTAAAAAAAAAACAACAACTATTTGAGCTAATAGTGTGCAAAATTG 1432
consensus_8232#1 TAAGTATGTTTAAAAAAAAA---------------------------------------- 643
************** ****
consensus_8232#0 GGACGCCGCGGCACGGAATGACGGGTGCGGATGAGATAAAAGCCACGCTGCACGAATCAT 1492
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 TATCATGGAAAACTTTACTTATGATTTATATTTATCTTAGATTTACGATGACGTGACCGA 1552
consensus_8232#1 ------------------------------------------------------------
consensus_8232#0 GAGATAAAACCGAAAACACTATTACACGAA 1582
consensus_8232#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||