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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 760 fasta sequence
[CAGAATCGGCNCGAGGTTGTATTGAGTCGGATGCATTTGTCACTGCGGCAGCTCCGCGAAGAGGATTCATTTCGCCGCCCCATACACCCTTGTGGCTGTGTATCCCGCCCGCGACACACCATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCA-GTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCG-CCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCC-GA-CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC-ATTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGC-TGACGAAGGAGAAGATTAAGAAA-A-TCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGC-TCCAGCTGCAGACCGAACAGGA-GGAAAGGGAAGGCGAAGCGCGGAAGGTAGCTGCGACGGCGGCAGCGGCAGCAGCAGCAGCAGCGGCGGCAGCCG]
[+] EMBL BX468600 [CAGAATCGGCNCGAGGTTGTATTGAGTCGGATGCATTTGTCACTGCGGCAGCTCCGCGAAGAGGATTCATTTCGCCGCCCCATACACCCTTGTGGCTGTGTATCCCGCCCGCGACACACCATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAA CACAACGCCGCTATCCAGGTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGNNCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAG CAGCGGGTGTCGATCGATCCGGAGCCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCACGATTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGCGTGACGAAGGAGAAGATTAAGAAANAGTCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGCGTCCAGCTGCAGACCGAACAGGA GGAAAGGGAAG ]
[+] EMBL BM589764 [ ccgCCGCGAAGAGGATTCATTCCGCCGCCCCATACACCCTTGTGGCTGTGCATCCCGCCCGCGACACACCATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCA GTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCG CCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCC GA CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC CTTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGC AGACGAAGGAGAAGATTAAGAAA A TCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAAAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGC TCCAG ]
[+] EMBL AGA284619 [ ACACCCTTGTGGCTGTGTATCCCGCCCGCGACACACCATGGAACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCA GTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCG CCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCC GA CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGAT ]
[+] EMBL AGA282266 [ GGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCA GTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCG CCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCC GA CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC ATTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGA ]
[+] EMBL BM614432 [ ccgcccacgCGTCCGCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCA GTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCG CCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCC GA CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC CTTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGC TGACGAAGGAGAAGATTAAGAAA A TCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGC TCCAGCTGCAGACCGAACAGGAGGGAAAGGGAAGGCGAAGCGCGGAAGGTAGCTGCGACGGCGGCAGC ]
[-] EMBL AGA283336 [ GCACCCGGTCGAGATGGGACCAATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGACCC GA CCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC ATTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGC TGACGAAGGAGAAGATTAAGAAA A TCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGC TCCAGCTGCAGACCGAACAGGA GGAAAGGGAAGGCGAAGCGCGGAAGGTAGCTGCGACGGCGGCAGCGGCAGCAGCAGCAGCAGCGGCGGCAGCCG]
[-] EMBL AGA280568 [ CGCTGCGCGAGGGTAACCTGGAGAAAGCGTTCAC ATTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGC TGACGAAGGAGAAGATTAAGAAA A TCATGCCGCGGGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGC TCCAGCTGCAGACCGAACAGGA GGAAAGGGAAGGCGAAGCGCGGAAGGTAGCTGCGACGGCGGCAGCGGCAGCAGCAGCAGCAGCGGCG ]
consensusID : consensus_8255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[CCGCCCACGCGTCCGCACTGCGGCAGCTCCGCGAAGAGGATTCATTCCGCCGCCCCATACACCCTTGTGGTTGTGCATCCCGCCCGCGACACACCATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAGTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCCGACCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGGAGAAAGCGTTCACCTTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGCTGACGAAGGAGAAGATTAAGAAAATCATGCCGCGGGCGGCAAGAGATCCGGTCGAACTTGCTGGAGAAGTACACCACCG]
[+] EMBL BM590229 [CCGCCCACGCGTCCGCACTGCGGCAGCTCCGCGAAGAGGATTCATTCCGCCGCCCCATACACCCTTGTGGTTGTGCATCCCGCCCGCGACACACCATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCGAGGGCCCCCTCAGTCAGCACGAAAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAGTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAGCTCGTCGCGGACAGCCAGCGGGTGTCGATCGATCCGACCATGCCGATCAATCGGTACTACCGCTCCGGCAACCAGATCGTCGAGACGGCGGACCGTTCGCTGCGCGAGGGTAACCTGGGAGAAAGCGTTCACCTTCTATCTGCGGTTCGTGACGATCTTCGTCGAGCTGATACTGGAGCACCCGGGGGTACAGGTCGGTGCCGCCGGCGGACAAGCAGCTGACGAAGGAGAAGATTAAGAAAATCATGCCGCGGGCGGCAAGAGATCCGGTCGAACTTGCTGGAGAAGTACACCACCG]
consensusID : consensus_8255#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[AAGAATNCGGCANGAGGGTGTANGGGCCCCTCAGTCAGCACGAACAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAGTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAAGCTCGTCGCGGGACAGCCAGCGGGTTGGTCGGATCGAATCCGACCATGCCCGATCAAATCGGGTACTACCGCTTCCCGGCGAACCAAGATCGTTCGAGGACGGCGGGACCCGTTCGCTGCCGCGGAGGGTAAACCTTGGAGAAAGCGTTCACCATTCGTATCTTGCGCGGTTCGGTTGACCGATCTTCGTTCGGAGGCTGAATACCTGGGAGCACCCGGGGTACAAGGTCGGTTGCCGCCGGCGGGACAAAGCAGCGTGACGAAGGAGGAAGATTACGGAAAAATCATGCCGCGGNGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGCTCCAGCTGCAGACCGAACAGGAGGAAAGG]
[+] EMBL BX468578 [AAGAATNCGGCANGAGGGTGTANGGGCCCCTCAGTCAGCACGAACAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAGTCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGCACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAAGCTCGTCGCGGGACAGCCAGCGGGTTGGTCGGATCGAATCCGACCATGCCCGATCAAATCGGGTACTACCGCTTCCCGGCGAACCAAGATCGTTCGAGGACGGCGGGACCCGTTCGCTGCCGCGGAGGGTAAACCTTGGAGAAAGCGTTCACCATTCGTATCTTGCGCGGTTCGGTTGACCGATCTTCGTTCGGAGGCTGAATACCTGGGAGCACCCGGGGTACAAGGTCGGTTGCCGCCGGCGGGACAAAGCAGCGTGACGAAGGAGGAAGATTACGGAAAAATCATGCCGCGGNGCGGAAGAGATCCGGTCGAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGCTCCAGCTGCAGACCGAACAGGAGGAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8255#0 CAGAATCGGCNCGAGGTTGTATTGAGTCGGATGCATTTGTCACTGCGGCAGCTCCGCGAA 60
consensus_8255#1 ------------------------CCGCCCACGCGTCCG-CACTGCGGCAGCTCCGCGAA 35
consensus_8255#2 ------------------------------------------------------------
consensus_8255#0 GAGGATTCATTTCGCCGCCCCATACACCCTTGTGGCTGTGTATCCCGCCCGCGACACACC 120
consensus_8255#1 GAGGATTCATTCCGCCGCCCCATACACCCTTGTGGTTGTGCATCCCGCCCGCGACACACC 95
consensus_8255#2 ------------------------------------------------------------
consensus_8255#0 ATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCG-AGGGCCCCCTCAGTC 179
consensus_8255#1 ATGGCACCTGTGGCCAGTGAGTAATCGACCCCGAAAGGTAAGCG-AGGGCCCCCTCAGTC 154
consensus_8255#2 ------------------------AAGAATNCGGCANGAGGGTGTANGGGCCCCTCAGTC 36
** ** * * * * * ** **********
consensus_8255#0 AGCACGAA-AAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAG 238
consensus_8255#1 AGCACGAA-AAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAG 213
consensus_8255#2 AGCACGAACAAGAAAGCAGCTCCACTCGTCGTGACGCCCAACCACAACGCCGCTATCCAG 96
******** ***************************************************
consensus_8255#0 TCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGC 298
consensus_8255#1 TCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGC 273
consensus_8255#2 TCCCGTTCGTTTTCGCGTTGGCCCGCGCCAGGTAGATGTCCGCCGCCCAGAAACAGTCGC 156
************************************************************
consensus_8255#0 ACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAA-GCTCGTCGCGG-A 356
consensus_8255#1 ACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAA-GCTCGTCGCGG-A 331
consensus_8255#2 ACCCGGTCGAGATGGGACCGATCGAGCCGCACCAGCGGCTCCAGAAAGCTCGTCGCGGGA 216
********************************************** *********** *
consensus_8255#0 CAGCCAGCGGGT--GTCG-ATCGA-TCCGACCATGCC-GATCAATC--GGTACTACCGCT 409
consensus_8255#1 CAGCCAGCGGGT--GTCG-ATCGA-TCCGACCATGCC-GATCAATC--GGTACTACCGCT 384
consensus_8255#2 CAGCCAGCGGGTTGGTCGGATCGAATCCGACCATGCCCGATCAAATCGGGTACTACCGCT 276
************ **** ***** ************ ****** ************
consensus_8255#0 --CCGGCAACC--AGATCGTC--GAGACGGCGGA--CCGTTCGCTGC-GCG-AGGGTAA- 458
consensus_8255#1 --CCGGCAACC--AGATCGTC--GAGACGGCGGA--CCGTTCGCTGC-GCG-AGGGTAA- 433
consensus_8255#2 TCCCGGCGAACCAAGATCGTTCGAGGACGGCGGGACCCGTTCGCTGCCGCGGAGGGTAAA 336
***** * * ******* ******** *********** *** *******
consensus_8255#0 CCTGG-AGAAAGCGTTCACATTC--TATCT---GCGGTTCG--TGAC-GATCTTCGTC-- 507
consensus_8255#1 CCTGGGAGAAAGCGTTCACCTTC--TATCT---GCGGTTCG--TGAC-GATCTTCGTC-- 483
consensus_8255#2 CCTTGGAGAAAGCGTTCACCATTCGTATCTTGCGCGGTTCGGTTGACCGATCTTCGTTCG 396
*** * ************* * ***** ******** **** *********
consensus_8255#0 -GAGCTGA-TACT--GGAGCACCCGGGG-TACAGGTCGGT-GCCGCCGGCGGAC--AAGC 559
consensus_8255#1 -GAGCTGA-TACT--GGAGCACCCGGGGGTACAGGTCGGT-GCCGCCGGCGGAC--AAGC 536
consensus_8255#2 GAGGCTGAATACCTGGGAGCACCCGGGGTACAAGGTCGGTTGCCGCCGGCGGGACAAAGC 456
***** *** ************* ******** *********** ****
consensus_8255#0 AGC-TGACGAAGGAG-AAGATTAAG--AAAATCATGCCGCGGGCGG-AAGAGATCCGGTC 614
consensus_8255#1 AGC-TGACGAAGGAG-AAGATTAAG--AAAATCATGCCGCGGGCGGCAAGAGATCCGGTC 592
consensus_8255#2 AGCGTGACGAAGGAGGAAGATTACGGAAAAATCATGCCGCGGNGCGGAAGAGATCCGGTC 516
*** *********** ******* * *************** * *************
consensus_8255#0 GAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGCTCCAGCTGCA 674
consensus_8255#1 GAACTTGCTGGAGAAGTACACCACCG---------------------------------- 618
consensus_8255#2 GAAGCTGCTGGAGAAGTACACCACCGAGTATCGGCTGTACCTGAAGCAGCTCCAGCTGCA 576
*** *********************
consensus_8255#0 GACCGAACAGGAGGAAAGGGAAGGCGAAGCGCGGAAGGTAGCTGCGACGGCGGCAGCGGC 734
consensus_8255#1 ------------------------------------------------------------
consensus_8255#2 GACCGAACAGGAGGAAAGG----------------------------------------- 595
consensus_8255#0 AGCAGCAGCAGCAGCGGCGGCAGCCG 760
consensus_8255#1 --------------------------
consensus_8255#2 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||