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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence
[CCGCAGTTAGAGGCTGAGTCATAATTTCGGCATGATTTTCAAATGTTTTGTATTATTTTTTCAAAATCTCTTTTTTTTAATTTAAAAATCCAACCCGACAGATGTTGATCACTTACAAATTTGTACAATTTTATAATCTAAATCCAGTTCAAAATTTTGAAACCATACACCAAGCGTGAACACCAGGGACGAGGGATCGCAGGTTGAGCTGGACATCAATCAATCGGATGCAGTTCTCTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTATTANGCGTATGCATATTTGCGTTCCGTTTCCACAACTTACCACACAAATTAAGATCAAGAACAAATAGAGAGCATATGTAACTCGTTTCCTTATCAGCGTGCTAAGACCAATANGGTTACGTGTAGGAGGAATTCTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAACTTACATTCGTTTCATCAGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGCAAGAGATATTTATAGCCAACTATACAAACACTGANCACTCGGTAAGACTGCAAATAGGTGGAAACTAATCGGGGGGAAGCNAAGCGATAACAGCTGTCNTTGAAGGGTGCTCAACTTTTGGCCCCAGCGGATAACAGTGACACAACCGAACATACTANGCCTTTCAAGCTTGGCTTGANACAGTGGCGCTTTATCGGCTAANTTTCCTNANGCAACACAAGANTTACGTCTCACCGGTTATTGGGGNACGATACTNTCGGACTGGTGNCTACCNAG]
[+] EMBL AL694764 [CCGCAGTTAGAGGCTGAGTCATAATTTCGGCATGATTTTCAAATGTTTTGTATTATTTTTTCAAAATCTCTTTTTTTTAATTTAAAAATCCAACCCGACAGATGTTGATCACTTACAAATTTGTACAATTTTATAATCTAAATCCAGTTCAAAATTTTGAAACCATACACCAAGCGTGAACACCAGGGACGAGGGATCGCAGGTTGAGCTGGACATCAATCAATCGGATGCAGTTCTCTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTATTANGCGTATGCATATTTGCGTTCCGTTTCCACAACTTACCACACAAATTAAGATCAAGAACAAATAGAGAGCATATGTAACTCGTTTCCTTATCAGCGTGCTAAGACCAATANGGTTACGTGTAGGAGGAATTCTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAACTTACATTCGTTTCATCAGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGCAAGAGATATTTATAGCCAACTATACAAACACTGANCACTCGGTAAGACTGCAAATAGGTGGAAACTAATCGGGGGGAAGCNAAGCGATAACAGCTGTCNTTGAAGGGTGCTCAACTTTTGGCCCCAGCGGATAACAGTGACACAACCGAACATACTANGCCTTTCAAGCTTGGCTTGANACAGTGGCGCTTTATCGGCTAANTTTCCTNANGCAACACAAGANTTACGTCTCACCGGTTATTGGGGNACGATACTNTCGGACTGGTGNCTACCNAG]
consensusID : consensus_827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[AAATTTTGAAACCATACACCAAGCGGAACACCAGGGACGAGGATCGAGGTTGAGTGGAATCAATCAATCGGATGAGTTTTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTTTTGCGTTGCATTTGCGTTCCGTTTCCACACTTCCACACAAATTAAATCAAGAACAAATAGAGAGCATATGTAATCGTTTCCTTATCGGCGTGCTAAGACAATAAGGTTACGTGTAGGAGGAATTTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAGCATACATTAGTTTCATCGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGAAGAGATATTTTAGCCAATATACAACACTGACACTCGGTAAGACTGAAATAGTGGAAACTATCGGCGGAAGCAACGATACAGCTGTTTGAAGGTGAAGGTGCTCACTTTGCCCAGCGATACAGTGACACACGACATACTACGCCTTCAAGCTGCTGACACGTGCGCTTTCCGCTAACTTCCTACGCAACAAGACTTACTCTACCGCATTTTGGGATACGATA]
[+] EMBL AGA281293 [AAATTTTGAAACCATACACCAAGCGGAACACCAGGGACGAGGATCGAGGTTGAGTGGAATCAATCAATCGGATGAGTTTTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTTTTGCGTTGCATTTGCGTTCCGTTTCCACACTTCCACACAAATTAAATCAAGAACAAATAGAGAGCATATGTAATCGTTTCCTTATCGGCGTGCTAAGACAATAAGGTTACGTGTAGGAGGAATTTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAGCATACATTAGTTTCATCGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGAAGAGATATTTTAGCCAATATACAACACTGACACTCGGTAAGACTGAAATAGTGGAAACTATCGGCGGAAGCAACGATACAGCTGTTTGAAGGTGAAGGTGCTCACTTTGCCCAGCGATACAGTGACACACGACATACTACGCCTTCAAGCTGCTGACACGTGCGCTTTCCGCTAACTTCCTACGCAACAAGACTTACTCTACCGCATTTTGGGATACGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_827#0 CCGCAGTTAGAGGCTGAGTCATAATTTCGGCATGATTTTCAAATGTTTTGTATTATTTTT 60
consensus_827#1 ------------------------------------------------------------
consensus_827#0 TCAAAATCTCTTTTTTTTAATTTAAAAATCCAACCCGACAGATGTTGATCACTTACAAAT 120
consensus_827#1 ------------------------------------------------------------
consensus_827#0 TTGTACAATTTTATAATCTAAATCCAGTTCAAAATTTTGAAACCATACACCAAGCGTGAA 180
consensus_827#1 -------------------------------AAATTTTGAAACCATACACCAAGCG-GAA 28
************************* ***
consensus_827#0 CACCAGGGACGAGGGATCGCAGGTTGAGCTGGACATCAATCAATCGGATGCAGTTCTCTA 240
consensus_827#1 CACCAGGGACGAGG-ATCG-AGGTTGAG-TGGA-ATCAATCAATCGGATG-AGTTTT--A 81
************** **** ******** **** **************** **** * *
consensus_827#0 AATGGCCACAATGTGGCGCTGTATGTTTCAAGTATTANGCGTATGCATATTTGCGTTCCG 300
consensus_827#1 AATGGCCACAATGTGGCGCTGTATGTTTCAAGTTTTGCGT-----TGCATTTGCGTTCCG 136
********************************* ** * ************
consensus_827#0 TTTCCACAACTTACCACACAAATTAAGATCAAGAACAAATAGAGAGCATATGTAACTCGT 360
consensus_827#1 TTTCCACA--CTTCCACACAAATTAA-ATCAAGAACAAATAGAGAGCATATGTAA-TCGT 192
******** * ************* **************************** ****
consensus_827#0 TTCCTTATCAGCGTGCTAAGACCAATANGGTTACGTGTAGGAGGAATTCTAGAACTGGAA 420
consensus_827#1 TTCCTTATCGGCGTGCTAAGAC-AATAAGGTTACGTGTAGGAGGAATT-TAGAACTGGAA 250
********* ************ **** ******************** ***********
consensus_827#0 CATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAACTT 480
consensus_827#1 CATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAGCAT 310
******************************************************** * *
consensus_827#0 ACATTCGTTTCATCAGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGC 540
consensus_827#1 ACATTAGTTTCATC-GCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGC 369
***** ******** *********************************************
consensus_827#0 AAGAATATAGTGTAGCAAGAGATATTTATAGCCAACTATACAAACACTGANCACTCGGTA 600
consensus_827#1 AAGAATATAGTGTAG-AAGAGATATTT-TAGCCAA-TATACAA-CACTGAC-ACTCGGTA 424
*************** *********** ******* ******* ****** ********
consensus_827#0 AGACTGCAAATAGGTGGAAACTAATCGGGGGGAAGCNAAGCGATAACAGCTGTCNTTGAA 660
consensus_827#1 AGACTG-AAATAG-TGGAAACTATC--GGCGGAAGCAACGATACAGCTGTTTGAAGGTGA 480
****** ****** ********* ** ****** * * * * * * * *
consensus_827#0 GGGTGCTCAACTTTTGGCCCCAGCGGATAACAGTGACACAACCGAACATACTANGCCTTT 720
consensus_827#1 AGGTGCTCA--CTTTG--CCCAGCGA--TACAGTGACACAC---GACATACTACGCCTT- 530
******** **** ******* *********** ******** *****
consensus_827#0 CAAGCTTGGCTTGANACAGTGGCGCTTTATCGGCTAANTTTCCTNANGCAACACAAGANT 780
consensus_827#1 CAAGCTG---CTGACAC----GTGCGCTTTCCGCTAACTT--CCTACGCAACA--AGACT 579
****** *** ** * ** * ** ***** ** * * ****** *** *
consensus_827#0 TACGTCTCACCGGTTATTGGGGNACGATACTNTCGGACTGGTGNCTACCNAG 832
consensus_827#1 TAC--TCTACCGCATTTTGGGATACGATA----------------------- 606
*** **** * ***** ******
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||