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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1027 fasta sequence
[CTGGATATGCATTCGTGTTGTGCGGCATGTGTGGTGCCCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCCCAAGAACACCAGTACC-GCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTG-AGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGACGAAAAGCGCCCGAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT-CCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATACGAACACCTAACAACGGTGC-AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAAAAGCTGCTGAAACCCTTCACCTGGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAA-CCGAGAAGGCTAGACTGCGGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTGTGACCACATTCGGAATACGGAATCGCTCAAGTTTGGCAATGTGTGCTGTCTCGTGCTGGATGAAGCTGATCGATTGCTTGAGCTTGGATACGAGACGGATGTGAAACAGATTATCGAAGCAATGATGGAAGCCATTTAAAAAAAAA]
[+] EMBL CNS09FYW [CTGGATATGCACTCGTGTTGTGCGGCATGTGTGGTGCCCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGAAGATGAACATCCACAGGTTTCAGAGCCCCCCAAGAACACCAGTACC GCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTGCAGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGACGAAAAGCGCCCGAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT CCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATACGAACACCTAACAACGGTGC AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAAAAGCTGCTGAAACCCTTCACCTGGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAA CCGAGAAGGCTAGACTGCGGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTTTGACCACATTCGGAATACGGAATCGCTCAAGTTTGGCAATGTGTGCTGTCTCGTGCTGGATGAA ]
[+] EMBL CNS09EQM [ tTTCGTGTTGTGCGGCATGTGTGGTG CCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCCCAAGAACACCAGTACC GCAGTCAATAACAAGGATGAAATTCCAATACGTTTCACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTG AGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGGTCCTTCATCCGACGAAAAGCGCCCAAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT CCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATACGAACACCTAACAACGGTGC AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGACCTTGCTGTACAAACGTATGAGTTGATACAAAA ]
[+] EMBL CNS09LTI [ ggtagcatcTGTG GTGAT TGT GTGCCCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCCCAAGAACACCAGTACC GCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTG AGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCACCCGACGAAAAGCGCCCGAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT CCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATACGAACACCTAACAACGGTGC AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGCTTGCTGTACAAACG ]
[+] EMBL BM580276 [ CCG ATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCACAAGAACACCAGTACC CCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAGTGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTG AGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGCCGAAAAGCGCCCTAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAGGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT CCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATATGAACACCTAACGACGGTGC AAAGCATGGCAATTCCGTCACTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATTAGGCCACAGATCCACCGCAGCGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGC ]
[+] EMBL CNS08FZK [ AATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCCCAAGAACACCAGTACCAGCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAATGC ]
[-] EMBL CNS09FYX [ AGAACACCAGTACC GCAGTCAATTACAAGGATGAAATTCCAATACGTTTTACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTG AGCGTTCAGAATAGTGCCAGCAATGAAAAATAACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGACGAAAAGCGCCCGAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTTACTCGATTCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT CCTTCAACTCGCTTGATATTCATCCAAACTCGAAGAAGAATATCGCAGTTCTGCTACAATACGAACACCTAACAACGGTGC AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAAAACTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCCACGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAAAAGCTGCTGAAACCCTTCACCTGGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAAGCCGAGAAGGCTAGACTGCGGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTGTGACCACATTCGGAATACGGAATCGCTTAAGTTTGGCAATGTGTGCTGTCTCGTGCTGGATGAAGCTGATCGATTGCTTGAGCTTGGATACGAGACGGATGTGAAACAGATTATCGAAGCAATGATGGAAGCCATTTAAAAAAAAA]
[-] EMBL CNS09LTJ [ TCAAGAGAAGCTGTTCAGTGAGCAATACCTTCAACTCGCTTGATATTCATCAAAACTCGAAGAAGAATATCGCAGTTCTGCTACAATACGAACACCTAACAACGGTGCAAAAGCATGGAAATTCCGTCGCTGCTAAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAGAAGCTGCTGAAACCCTTCACCTGGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAA CCGAGAAGGCTAGACTGCGGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTGTGACCACATTCGGAATACGGAATCGCTCAAGTTTGGCAAT ]
[-] EMBL CNS09EQN [ AACACCTAACAACGGTGC AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAAAAGCTGCTGAAACCCTTCACCTGGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAA CCGAGAAGGCTAGACTGCGGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTGTGACCACATTCGGAATACGGAATCGCTCAAGTTTGGCAATGTGTGCTGTCTCGTGa ]
consensusID : consensus_8270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[CCGCCCACGCGTCCGCCCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCACAAGAACACCAGTACCCCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAGTGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTGAGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGCCGAAAAGCGCCCTAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAGGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAATCCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATATGAACACCTAACGACGGTGCAAAGCATGGGCAATTCCGTCACTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGGAAAACGCTCGCC]
[+] EMBL BM591466 [CCGCCCACGCGTCCGCCCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCACAAGAACACCAGTACCCCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAGTGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTGAGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGCCGAAAAGCGCCCTAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAGGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAATCCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATATGAACACCTAACGACGGTGCAAAGCATGGGCAATTCCGTCACTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGGAAAACGCTCGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8270#0 CTGGATATGCATTCGTGTTGTGCGGCATGTGTGGT-GCCCGAATCTGAACTGGGAATTGC 59
consensus_8270#1 ----------------------CCGCCCACGCGTCCGCCCGAATCTGAACTGGGAATTGC 38
* ** * * ************************
consensus_8270#0 ACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACA 119
consensus_8270#1 ACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACA 98
************************************************************
consensus_8270#0 GGTTTCAGAGCCCCCCAAGAACACCAGTACCGCAGTCAATAACAAGGATGAAATTCCAAT 179
consensus_8270#1 GGTTTCAGAGCCCCACAAGAACACCAGTACCCCAGTCAATAACAAGGATGAAATTCCAAT 158
************** **************** ****************************
consensus_8270#0 ACGTTTTACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTGAG 239
consensus_8270#1 ACGTTTTACTAAAGTGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTGAG 218
************* **********************************************
consensus_8270#0 CGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGG 299
consensus_8270#1 CGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGG 278
************************************************************
consensus_8270#0 CAATGTTCCTTCATCCGACGAAAAGCGCCCGAAAGAACAGGTGGTAAAGCAAGAGAAACG 359
consensus_8270#1 CAATGTTCCTTCATCCGCCGAAAAGCGCCCTAAAGAACAGGTGGTAAAGCAAGAGAAACG 338
***************** ************ *****************************
consensus_8270#0 GCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGAT 419
consensus_8270#1 GCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGAT 398
************************************************************
consensus_8270#0 TCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAATCCTTCGACTC 479
consensus_8270#1 TCGGCCACCTGAGGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAATCCTTCGACTC 458
************ ***********************************************
consensus_8270#0 GCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATACGAACACCT 539
consensus_8270#1 GCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATATGAACACCT 518
*************************************************** ********
consensus_8270#0 AACAACGGTGCAAAGCATGG-CAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATAC 598
consensus_8270#1 AACGACGGTGCAAAGCATGGGCAATTCCGTCACTGCTCAAGGGCACCGATGCATTGATAC 578
*** **************** ********** ****************************
consensus_8270#0 GCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGC 658
consensus_8270#1 GCGCCCAAACTGGTTCGGGGAAAACGCTCGCC---------------------------- 610
******************* ************
consensus_8270#0 ATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAA 718
consensus_8270#1 ------------------------------------------------------------
consensus_8270#0 CGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAAAAGCTGCTGAAACCCTTCACCT 778
consensus_8270#1 ------------------------------------------------------------
consensus_8270#0 GGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAACCGAGAAGGCTAGACTGC 838
consensus_8270#1 ------------------------------------------------------------
consensus_8270#0 GGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTGTGACCACATTCGGAATA 898
consensus_8270#1 ------------------------------------------------------------
consensus_8270#0 CGGAATCGCTCAAGTTTGGCAATGTGTGCTGTCTCGTGCTGGATGAAGCTGATCGATTGC 958
consensus_8270#1 ------------------------------------------------------------
consensus_8270#0 TTGAGCTTGGATACGAGACGGATGTGAAACAGATTATCGAAGCAATGATGGAAGCCATTT 1018
consensus_8270#1 ------------------------------------------------------------
consensus_8270#0 AAAAAAAAA 1027
consensus_8270#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||