cluster # 829

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Anopheles gambiae
cluster # 829 cluster # 829 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_829#0 length = 692 sequences # 1

consensus_829#1 length = 683 sequences # 1

consensusID : consensus_829#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [CCGCCCACGCGTCCGCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTTGTCACAAATCAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAATCAAAACTGCACACACACACACACACAATATCGTGTTTCTCTTTATGCATGAAATCAGGCCCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCGAGGCAGGAGGAGGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAAGGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGTGTGTAATTAGTGTATGAATGTACTGTGTAGTTTTGTCAGAAGGGAGGGAAGAGAACAGATCGACCGCGATGATCGTGCGATCATGTACGTACAGTTTACTCTGAATATAAGCCCCAAGATATATATCCTGTCCCATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTGAAAAACAGTAAATTCAAATGTAAACTCGAATAAGAAATATCGAGAAAATGTCATAATCAATCAATCAAAACGATGGGCTGCAAATGAAGTAATAGAAAGGAGAAGAACATATGCAAACAACAGCAACAAAAATGTGTCATTAAATGAAATTGGCAGAGA]

[+] EMBL BM645706             [CCGCCCACGCGTCCGCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTTGTCACAAATCAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAATCAAAACTGCACACACACACACACACAATATCGTGTTTCTCTTTATGCATGAAATCAGGCCCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCGAGGCAGGAGGAGGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAAGGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGTGTGTAATTAGTGTATGAATGTACTGTGTAGTTTTGTCAGAAGGGAGGGAAGAGAACAGATCGACCGCGATGATCGTGCGATCATGTACGTACAGTTTACTCTGAATATAAGCCCCAAGATATATATCCTGTCCCATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTGAAAAACAGTAAATTCAAATGTAAACTCGAATAAGAAATATCGAGAAAATGTCATAATCAATCAATCAAAACGATGGGCTGCAAATGAAGTAATAGAAAGGAGAAGAACATATGCAAACAACAGCAACAAAAATGTGTCATTAAATGAAATTGGCAGAGA]




>consensus_829#0
CCGCCCACGCGTCCGCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTTGTCACAAATCA
ATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAATC
AAAACTGCACACACACACACACACAATATCGTGTTTCTCTTTATGCATGAAATCAGGCCC
TGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCGAGGCAGGAGGAGG
AGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAAGG
TCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGTGT
GTAATTAGTGTATGAATGTACTGTGTAGTTTTGTCAGAAGGGAGGGAAGAGAACAGATCG
ACCGCGATGATCGTGCGATCATGTACGTACAGTTTACTCTGAATATAAGCCCCAAGATAT
ATATCCTGTCCCATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTGAAAAACA
GTAAATTCAAATGTAAACTCGAATAAGAAATATCGAGAAAATGTCATAATCAATCAATCA
AAACGATGGGCTGCAAATGAAGTAATAGAAAGGAGAAGAACATATGCAAACAACAGCAAC
AAAAATGTGTCATTAAATGAAATTGGCAGAGA

consensusID : consensus_829#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [TCAGTACAATATGAATTATTAAGCAGACACACACAGAATAGTTGTTTTAATTGTGGTTATTTCGCGCTTTTGGGGGGTTTCGTTTTCTAAATTATTGGCTTGAGATGCTGAGAGCTGGTGGGTGGTGGAGAAGGTCTCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTGTCACAAATCAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAAGCAAAACTGTACACTCACACACACACAATATCGCGTTTCTCTTTATGCATGAAATCAGGCCCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCTTCGAGGAGGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAAGGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGTGTTTGTAATTAGTGTATGAATGTACAGCTGTTTAGTTTTGTCAGAAGAGGGGGATGAGAACAGATCGACCGCGATGATCGTGCGATCATGTACTACAGTTTACTCTGAATATAAGCCCCAAGATATATATCCTGTCCTATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTGAAAAACAGTACATTCAAATGTAAACTCGA]

[+] EMBL BX611194             [TCAGTACAATATGAATTATTAAGCAGACACACACAGAATAGTTGTTTTAATTGTGGTTATTTCGCGCTTTTGGGGGGTTTCGTTTTCTAAATTATTGGCTTGAGATGCTGAGAGCTGGTGGGTGGTGGAGAAGGTCTCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTGTCACAAATCAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAAGCAAAACTGTACACTCACACACACACAATATCGCGTTTCTCTTTATGCATGAAATCAGGCCCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCTTCGAGGAGGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAAGGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGTGTTTGTAATTAGTGTATGAATGTACAGCTGTTTAGTTTTGTCAGAAGAGGGGGATGAGAACAGATCGACCGCGATGATCGTGCGATCATGTACTACAGTTTACTCTGAATATAAGCCCCAAGATATATATCCTGTCCTATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTGAAAAACAGTACATTCAAATGTAAACTCGA]




>consensus_829#1
TCAGTACAATATGAATTATTAAGCAGACACACACAGAATAGTTGTTTTAATTGTGGTTAT
TTCGCGCTTTTGGGGGGTTTCGTTTTCTAAATTATTGGCTTGAGATGCTGAGAGCTGGTG
GGTGGTGGAGAAGGTCTCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTGTCACAAATC
AATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAAG
CAAAACTGTACACTCACACACACACAATATCGCGTTTCTCTTTATGCATGAAATCAGGCC
CTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCTTCGAGGAGGAGG
AGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAAGGTCT
GTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGTGTTTG
TAATTAGTGTATGAATGTACAGCTGTTTAGTTTTGTCAGAAGAGGGGGATGAGAACAGAT
CGACCGCGATGATCGTGCGATCATGTACTACAGTTTACTCTGAATATAAGCCCCAAGATA
TATATCCTGTCCTATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTGAAAAAC
AGTACATTCAAATGTAAACTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_829#0      ------------------------------------------------------------
consensus_829#1      TCAGTACAATATGAATTATTAAGCAGACACACACAGAATAGTTGTTTTAATTGTGGTTAT 60
                                                                                 

consensus_829#0      ------------------------------------------------------------
consensus_829#1      TTCGCGCTTTTGGGGGGTTTCGTTTTCTAAATTATTGGCTTGAGATGCTGAGAGCTGGTG 120
                                                                                 

consensus_829#0      --CCGCCCACGCGTCCGCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTTTGTCACAAAT 58
consensus_829#1      GGTGGTGGAGAAGGTCTCAGCTTTGTTTTAAAATTAAGCGAGGGGGGTTT-GTCACAAAT 179
                         *   *   *  * ********************************* *********

consensus_829#0      CAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAA 118
consensus_829#1      CAATGTTTTTTGGCTATATTAGTTAACGTGTTTTTTGTTGTAATGTGTTCCTTATGAAAA 239
                     ************************************************************

consensus_829#0      TCAAAACTGCACACACACACACACACAATATCGTGTTTCTCTTTATGCATGAAATCAGGC 178
consensus_829#1      GCAAAACTGTACACTCACACACACACAATATCGCGTTTCTCTTTATGCATGAAATCAGGC 299
                      ******** **** ****************** **************************

consensus_829#0      CCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCCGAGGCAGGAGGA 238
consensus_829#1      CCTGGTTTCATGCGTTCTAAATTATTTGTCAAAAGGCTGTAAAGGCCC----TTCGAGGA 355
                     ************************************************       *****

consensus_829#0      GGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAA 298
consensus_829#1      GGAGGAGTATGTACGAGGATGCGCTTGAGGAGGAAAGCGGTTAATTTTCGCCTGTAGAAA 415
                     ************************************************************

consensus_829#0      GGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGT 358
consensus_829#1      GGTCTGTGATGGTGGTGATAATGAAAAGCATTATATAGAAAGTAATCGGTGTGTGTGCGT 475
                     ************************************************************

consensus_829#0      GT--GTAATTAGTGTATGAATGTAC---TGTGTAGTTTTGTCAGAAGGGAGGGAAGAGAA 413
consensus_829#1      GTTTGTAATTAGTGTATGAATGTACAGCTGTTTAGTTTTGTCAGAAGAGGGGGATGAGAA 535
                     **  *********************   *** *************** * **** *****

consensus_829#0      CAGATCGACCGCGATGATCGTGCGATCATGTACGTACAGTTTACTCTGAATATAAGCCCC 473
consensus_829#1      CAGATCGACCGCGATGATCGTGCGATCATGTAC-TACAGTTTACTCTGAATATAAGCCCC 594
                     ********************************* **************************

consensus_829#0      AAGATATATATCCTGTCCCATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTG 533
consensus_829#1      AAGATATATATCCTGTCCTATTTACCCGAACAAAGTGAAATATTATGGCAAGAAAAACTG 654
                     ****************** *****************************************

consensus_829#0      AAAAACAGTAAATTCAAATGTAAACTCGAATAAGAAATATCGAGAAAATGTCATAATCAA 593
consensus_829#1      AAAAACAGTACATTCAAATGTAAACTCGA------------------------------- 683
                     ********** ******************                               

consensus_829#0      TCAATCAAAACGATGGGCTGCAAATGAAGTAATAGAAAGGAGAAGAACATATGCAAACAA 653
consensus_829#1      ------------------------------------------------------------
                                                                                 

consensus_829#0      CAGCAACAAAAATGTGTCATTAAATGAAATTGGCAGAGA 692
consensus_829#1      ---------------------------------------