Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8329 cluster # 8329       Sequences # 10       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8329#0 length = 2223 sequences # 6  
consensus_8329#1 length = 752 sequences # 2  
 consensus_8329#2 length = 461 sequences # 1  
consensus_8329#3 length = 129 sequences # 1  
consensusID : consensus_8329#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2223
fasta sequence 
                              [CCGGGAATGCGGCGGCTCCTACATAAAGCTCCTTTCCGTGGGCGACGGTACGAAGGATCTGAAGCAGTTCCACGACAAAACACCGTACACGATTATGTTCGGACCGGACAAGTGTGGCAACGATGTAAAGTTGCATTTCATTTTCCGACACGTTAACCCGATTAATGGTACCATCACGGAGAAGCATTGCAACAAGCAGAAAGATCGGCTTGATGATCCGTTCAAAGACAAACGCCCCCATTTGTACCAATTGATTATTCGCCCGGACAACACGTACACCATACGAGTGGATCACAAAACCGTCAACGAGGGCTCGTTGCTCACCAACTTTACGCCGGCAGTGAACCCGCCTGCTGAAATCGATGACCCGGAGGACCGCAAGCCGGAGAACTGGGACGATCGCGAAAAAATCCCCGATCCCGAAGCGACCAAACCCGACGACTGGAACGAGGACGAACCGGCACAAATTCCCGACCCGAAGGCTACCAAGCCGGCCGGCTGGTTGGACGATGTGGAGGAGATGGTACCGGACAGTTCGGCCGTGAAGCCGGAGGACTGGGACAACGATATGGGATGGTGAGTGGGAACCGCCCCTGATTCCGAACCCGATGTGTGAGAAGGCGGTTGGTTGCGGTTTGTGGAAGGCTCCGATGGTACCGAACCCTAACTACAAGGGTAAATGGCGCCCGCCGCTTATCGCTAACGTAAACTACCAAGGAAAGTGGGCCCCGCGCAAGATTCC-TAATCCGGACTTCTTTGAAGATCTAA-CGCCGTTCCGAATGACACCGATTGCCGCGGTAGGCATCGAACTTTGGTCCATGTCAAACGATATACTGTTTGATAACATTGTTATTTGCGATGATGAATCCGTTGCCGACGAATGGGCTGCACAAACGTTCGATCTCAAAGTGAAGACGCTTGATCGGCAGGCGGAAACCTTCGTTTCGCGTGTGCTTAAGTACTGCAACAGCAATCCCTGGATGTGGGCTGTATTGATAGTAGTAGTGGGATTGCCAGTTGCTTTAATGATCTACTTCATGTGCTTTACCAAGGGTGACGCCAAGGCGGAAATTGGACGCAAGAAGAAGAATGACGATTATCCAGCACCGGAGCAAGAGCAGGACGAGCTGGTCGGTGGTGCTGGTGAGGAAGCGGAAGACGACGGACGATCCAGCAAAACAAAGCTGAATGCCGCAGCCACGGGGTCCTCCGGTTCACGGTCAGCGAGCAGTGCCGGCGAAGCGTACGCAGAGAATGAGGATGAACGTGACGGCGATGAGGCTGAAGAGGATGAGGAAGACGACGAAGCACAGGAAGAGGCTCAGGAAATGGAGGCCGGTGAAGAGGAAGCATCGTCAAGCGATGCACCAGTAGATAGCAAGAATTCGGAAGGCGGGGAAGGCCTTAAGAAGAGAAGAGCCCGCAAGGATTAGAAGCTAAGCGGGGAGGTAGAATGGTAGAACAATAACCTATGAGCCGTTAGATGTGGTTGCGTTTGCATGGTATAGTATCGATTGGTAAAGGACACCTAGAGAGGAAGGGCCCGTAATGTAATGTTTTCTTCTATCTCAGCCTGTATGTGCCCGTAGACATGCAATAATTATTTCCAAACTTTTAAGTTATCTTGACAGTCGGGTTCATTTTTTTTGTTAGCTCATCTCACATAGTTCTTAATAGCTTTCGATCTGGTCTAAAATTAGCCCCTGCTGGGTCGAATCGTCGTGTGTGCGCATAGGGCACGCGTGTATTCTTACGCAAGTCGCGTGTGAACGGCTCCACCCACGGGATCGGCCCCATATTTATTCCCAAGAGACCCCTGCTGGGTGTGCAAGTTAACAAACAAGTTAAGGTCAGGCTAGCTTTTCCATCGCCGAATTATTGCTTACAATAATGCATTTCTCCGCGGTGTGTACAACGTTACGTTTGTACTTCTGTTAGCTGAAATTAAACCAGACGAAACAACAACAAAAACGAGCGGGGAACAGTAAATAGAGCGTAACGGTTAAGCAATTTGGATACATTTTTTTGCATATATACTTAGCACCAAAGGAAAAATGGCTCTAGTTTAAGTGAACGATTCTAAACTAACATACGGAAGGGCGAGGGTGGGTATGTAAGTGCATTTGCAGCTGCTGAAATAGTTTCATCCATTGATTATGTGTGGCATTTAGAGATTTCCTTTGTCTTTCAATTTGTTTCGGAGTAAATTAGAACTACACTTTG]

[+] EMBL BM655517             [CCGGGAATGCGGCGGCTCCTACATAAAGCTCCTTTCCGTGGGCGACGGTACGAAGGATCTGAAGCAGTTCCACGACAAAACACCGTACACGATTATGTTCGGACCGGACAAGTGTGGCAACGATGTAAAGTTGCATTTCATTTTCCGACACGTTAACCCGATTAATGGTACCATCACGGAGAAGCATTGCAACAAGCAGAAAGATCGGCTTGATGATCCGTTCAAAGACAAACGCCCCCATTTGTACCAATTGATTATTCGCCCGGACAACACGTACACCATACGAGTGGATCACAAAACCGTCAACGAGGGCTCGTTGCTCACCAACTTTACGCCGGCAGTGAACCCGCCTGCTGAAATCGATGACCCGGAGGACCGCAAGCCGGAGAACTGGGACGATCGCGAAAAAATCCCCGATCCCGAAGCGACCAAACCCGACGACTGGAACGAGGACGAACCGGCACAAATTCCCGACCCGAAGGCTACCAAGCCGGCCGGCTGGTTGGACGATGTGGAGGAGATGGTACCGGACAGTTCGGCCGTGAAGCCGGAGGACTGGGACAACGATATGGGATGGTGAGTGGGAACCGCCCCTGATTCCGAACCCGATGTGTGAGAAGGCGGTTGGTTGCGGTTTGTGGAAGGCTCCGATGGTACCGAACCCTAACTACAAGGGTAAATGGCGCCCGCCGCTTATCGCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX601829             [                                                                                                                        CGACGTAAAGTTGCATTTCATTTTCCGACACGTTAACCCGATTAATGGTACCATCACGGAGAAGCATTGCAACAAGCAGAAAGATCGGCTTGATGATCCGTTCAAAGACAAACGCCCCCATTTGTACCAATTGATTATTCGCCCGGACAACACGTACACCATACGAGTGGATCACAAAACCGTCAACGAGGGCTCGTTGCTCACCAACTTTACGCCGGCAGTGAACCCGCCTGCTGAAATCGATGACCCGGAGGACCGCAAGCCGGAGAACTGGGACGATCGCGAAAAAATCCCCGATCCCGAAGCGACCAAACCCGACGACTGGAACGAGGACGAACCGGCACAAATTCCCGACCCGAAGGCTACCAAGCCGGCCGGCTGGTTGGACGATGTGGAGGAGATGGTACCGGACAGTTCGGCCGTGAAGCCGGAGGACTGGGACAACGATAT GGATGGTGAATGGGAACCGCCCCTGATTCCGAACCCGATGTGTGAGAAGGCGGTTGGTTGCGGTTTGTGGAAGGCACCGATGGTACCGAACCCTAACTACAAGGGCAAATGGCGCCCGCCGCTAATCGCTAACGTAAACTACCAAGGAAAGTGGGCCCCGCGCAAGATTCC TAATCCGGACTTCTTTGAAGATCTAA CGCCGTTCCGAATGACACCGATTGCCGCGGTAGGCATCGAACTTTGGTCCATGTCAAACGATATACTGTTTGATAACATTGTTATTTGCGATGATGAATCCGTTGCCGACGAATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AGA282877            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAAGTGGGCCCCGCGCAAGATTCCTTAATCCGGACTTCTTTGAAGATCTAACCGCCGTTCCGAATGACACCGATTGCCGCGGTAGGCATCGAACTTTGGTCCATGTCAAACGATATACTGTTTGATAACATTGTTATTTGCGATGATGAATCCGTTGCCGACGAATGGGCTGCACAAACGTTCGATCTCAAAGTGAAGACGCTTGATCGGCAGGCGGAAACCTTCGTTTCGCGTGTGCTTAAGTACTGCAACAGCAATCCCTGGATGTGGGCTGTATTGATAGTAGTAGTGGGATTGCCAGTTGCTTTAATGATCTACTTCATGTGCTTTACCAAGGGTGACGCCAAGGCGGAAATTGGACGCAAGAAGAAGAATGACGATTATCCAGCACCGGAGCAAGAGCAGGACGAGCTGGTCGGTGGTGCTGGTGAGGAAGCGGAAGACGACGGACGATCCAGCAAAACAAAGCTGAATGCCGCAGCCACGGGGTCCTCCGGTTCACGGTCAGCGAGCAGTGCCGGCGAAGCGTACGCAGAGAATGAGGATGAACGTGACGGCGATGAGGCTGAAGAGGATGAGGAAGACGACGAAGCACAGGAAGAGGCTCAGGAAATGGAGGCCGGTGAAGAGGAAGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM608023             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccgGTGCTTTACCAAGGGTGACGCCAAGGCGGAAATTGGACGCAAGAAGAAGAATGACGATTATCCAGCACCGGAGCAAGAGCAGGACGAGCTGGTCGGTGGTGCTGGTGAGGAAGCGGAAGACGATGGACGATCCAGCAAAACAAAGCTGAATGCCGCAGCCACGGGGTCCTCCGGTTCACGGTCAGCCAGCAGTGCCGGCGAAGCGTACGCAGAGAATGAGGATGAACGTGACGGCGATGAGGCTGAAGAGGATGAGGAAGACGACGAAGCACAGGAAGAGGCTCAGGAAATGGAGGCCGGTGAAGAGGAAGCATCGTCAAGCGATGCACCAGTAGATAGCAAGAATTCGGAAGGCGGGGAAGGCCTTAAGAAGAGAAGAGCCCGCAAGGATTAGAAGCTAAGCGGGGAGGTAGAATGGTAGAACAATAACCTATGAGCCGTTAGATGTGGTTGCGTTTGCATGGTATAGTATCGATTGGTAAAGGACACCTAGAGAGGAAGGGCCCGTAATGTAATGTTTTCTTCTATCTCAGCCTGTATGTGCCCGTAGACATGCAATAATTATTTCCAAACTTTTAAGTTATCTTGACAGTCGGGTTCATTTTTTTTGTTAGCTCATCTCACATAGTTCTTAATAGCTTTCGATCTGGTCTAAAATTAGCCCCTGCTGGGTCGAATCGTCGTGTGTGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX617083             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGGTATAGTATCGATTGGTAAAGGACACCTAGAG    AGGGCCCGTAATGTAATGTTTTCTTCTATCTCAGCCTGTATGTGCCCGTAGACATGCAATAATTATTTCCAAACTTTTAAGTTATCTTGACAGTCGGGTTCA TTTTTTTGTTAGCTCATCTCACATAGTTCTTAATAGCTTTCGATCTGGTCTAAAATTAGCCCCTGCTGGGTCGAATCGTCGTGTGTGCGCATAGGGCACGCGTGTATTCTTACGCAAGTCGCGTGTGAACGGCTCCACCCACGGGATCGGCCCCATATTTATTCCCAAGAGACCCCTGCTGGGTGTGCAAGTTAACAAACAAGTTAAGGTCAGGCTAGCTTTTCCATCGCCGAATTATTGCTTACAATAATGCATTTCTCCGCGGTGTGTACAACGTTACGTTTGTACTTCTGTTAGCTGAAATTAAACCAGACGAAACAACAACAAAAACGAGCGGGGAACAGTAAATAGAGCGTAACGGTTAAGCAATTTGGATACATTTTTTTGCATATATACTTAGCACCAAAGGAAAAATGGCTCTAGTTTAAGTGAACGATTCTAAACTAACATACGGAAGGGCGAGGGTGGGTATGTAAGTGCATTTGCAGCTGCTGAAATAGTTTCATCCATTGATTATGTGTGGCATTTAGAGATTTCCTTTGTCTTTCAATTTGTTTCGGAGTAAATTAGAACTACACTTTG]
[+] EMBL BX613758             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCCACCCACGGGATCGGCCCCATATTTATTCCCAAGAGACCCCTGCTGGGTGTGCAAGTTAACAAACAAGTTAAGGTCAGGCTAGCTTTTCCATCGCCGAATTATTGCTTACAATAATGCATTTCTCCGCGGTGTGTACAACGTTACGTTTGTACTTCTGTTAGCTGAAATTAAACCAGACGAAACAACAACAAAAACGAGCGGGGAACAGTAAATAGAGCGTAACGGTTAAGCAATTTGGATACATTTTTTTGCATATATACTTAGCACCAAAGGAAAAATGGCTCTAGTTTAAGTGAACGATTCTAAACTAACATACGGAAGGGCGAGGGTGGGTATGTAAGTGCATTTGCAGCTGCTGAAATAGTTTCATCCATTGATTATGTGTGGCATTTAGAGATTTCCTTTGTCTTTCAATTTGTTTCGGAG                    ]




>consensus_8329#0
CCGGGAATGCGGCGGCTCCTACATAAAGCTCCTTTCCGTGGGCGACGGTACGAAGGATCT
GAAGCAGTTCCACGACAAAACACCGTACACGATTATGTTCGGACCGGACAAGTGTGGCAA
CGATGTAAAGTTGCATTTCATTTTCCGACACGTTAACCCGATTAATGGTACCATCACGGA
GAAGCATTGCAACAAGCAGAAAGATCGGCTTGATGATCCGTTCAAAGACAAACGCCCCCA
TTTGTACCAATTGATTATTCGCCCGGACAACACGTACACCATACGAGTGGATCACAAAAC
CGTCAACGAGGGCTCGTTGCTCACCAACTTTACGCCGGCAGTGAACCCGCCTGCTGAAAT
CGATGACCCGGAGGACCGCAAGCCGGAGAACTGGGACGATCGCGAAAAAATCCCCGATCC
CGAAGCGACCAAACCCGACGACTGGAACGAGGACGAACCGGCACAAATTCCCGACCCGAA
GGCTACCAAGCCGGCCGGCTGGTTGGACGATGTGGAGGAGATGGTACCGGACAGTTCGGC
CGTGAAGCCGGAGGACTGGGACAACGATATGGGATGGTGAGTGGGAACCGCCCCTGATTC
CGAACCCGATGTGTGAGAAGGCGGTTGGTTGCGGTTTGTGGAAGGCTCCGATGGTACCGA
ACCCTAACTACAAGGGTAAATGGCGCCCGCCGCTTATCGCTAACGTAAACTACCAAGGAA
AGTGGGCCCCGCGCAAGATTCCTAATCCGGACTTCTTTGAAGATCTAACGCCGTTCCGAA
TGACACCGATTGCCGCGGTAGGCATCGAACTTTGGTCCATGTCAAACGATATACTGTTTG
ATAACATTGTTATTTGCGATGATGAATCCGTTGCCGACGAATGGGCTGCACAAACGTTCG
ATCTCAAAGTGAAGACGCTTGATCGGCAGGCGGAAACCTTCGTTTCGCGTGTGCTTAAGT
ACTGCAACAGCAATCCCTGGATGTGGGCTGTATTGATAGTAGTAGTGGGATTGCCAGTTG
CTTTAATGATCTACTTCATGTGCTTTACCAAGGGTGACGCCAAGGCGGAAATTGGACGCA
AGAAGAAGAATGACGATTATCCAGCACCGGAGCAAGAGCAGGACGAGCTGGTCGGTGGTG
CTGGTGAGGAAGCGGAAGACGACGGACGATCCAGCAAAACAAAGCTGAATGCCGCAGCCA
CGGGGTCCTCCGGTTCACGGTCAGCGAGCAGTGCCGGCGAAGCGTACGCAGAGAATGAGG
ATGAACGTGACGGCGATGAGGCTGAAGAGGATGAGGAAGACGACGAAGCACAGGAAGAGG
CTCAGGAAATGGAGGCCGGTGAAGAGGAAGCATCGTCAAGCGATGCACCAGTAGATAGCA
AGAATTCGGAAGGCGGGGAAGGCCTTAAGAAGAGAAGAGCCCGCAAGGATTAGAAGCTAA
GCGGGGAGGTAGAATGGTAGAACAATAACCTATGAGCCGTTAGATGTGGTTGCGTTTGCA
TGGTATAGTATCGATTGGTAAAGGACACCTAGAGAGGAAGGGCCCGTAATGTAATGTTTT
CTTCTATCTCAGCCTGTATGTGCCCGTAGACATGCAATAATTATTTCCAAACTTTTAAGT
TATCTTGACAGTCGGGTTCATTTTTTTTGTTAGCTCATCTCACATAGTTCTTAATAGCTT
TCGATCTGGTCTAAAATTAGCCCCTGCTGGGTCGAATCGTCGTGTGTGCGCATAGGGCAC
GCGTGTATTCTTACGCAAGTCGCGTGTGAACGGCTCCACCCACGGGATCGGCCCCATATT
TATTCCCAAGAGACCCCTGCTGGGTGTGCAAGTTAACAAACAAGTTAAGGTCAGGCTAGC
TTTTCCATCGCCGAATTATTGCTTACAATAATGCATTTCTCCGCGGTGTGTACAACGTTA
CGTTTGTACTTCTGTTAGCTGAAATTAAACCAGACGAAACAACAACAAAAACGAGCGGGG
AACAGTAAATAGAGCGTAACGGTTAAGCAATTTGGATACATTTTTTTGCATATATACTTA
GCACCAAAGGAAAAATGGCTCTAGTTTAAGTGAACGATTCTAAACTAACATACGGAAGGG
CGAGGGTGGGTATGTAAGTGCATTTGCAGCTGCTGAAATAGTTTCATCCATTGATTATGT
GTGGCATTTAGAGATTTCCTTTGTCTTTCAATTTGTTTCGGAGTAAATTAGAACTACACT
TTG

consensusID : consensus_8329#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 752
fasta sequence 
                              [AGAATCCCNCGAGGTTCGATATTGATTGTGAGTGGGAACCTGCCCCTGATTCCGAACCCGATGTGTGAGAAGGCGGTTGGTTGCGGTTTGTGGAAGTGCTCCGATGGTACCGAACCCTAACTACAAGGGTAAATGGCGCCCGCCGCTTATCGCTAACGTAAACTACCAAGGAAAGTGGGCCCCGCGCAAGATTCCTAATCCTGGACTTCTTTGAAGATCTAACTGCCGTTCCTGAATGACACCTGATTGCCGCGGTAGGCATCGAACTTTGGTCCATGTCAAACGATATACTTGTTTGATAACATTGTTATTTGCGATGATGAATCCGTTGCTGACGAATGGGCTGCACAAACGTTCGATCTCAAAGTGAAGACGCTTGATCGGCAGGCGCAAACCCTATGGGACCNGAGCGATGCGGTCACATTAACTACAAGCCAGGCTATTGGGGAGCGTACTTTGTGTACTTGNNTCAATACCATTGATTGCCTACGTATGGTTCCTGTGGTCTCGACGCGATAAAGAGGGTGACGCCAAGGCCGGCAAATTTGGACGCAAGAAGAAGAATGACGATTATCCTGCAACGGAGCAAGAGCAGGACGAGCTGGTCGGTGGTGCTGGTGAGGAAGCGGAAGACGACGGACGATCCAGCCACAACAAANGCTGAATTGGCGCAG-CACGGGGTCCTCCGGTTCACGGTCAGCCAGCAGTGCCGGCGAAGCGTACGCAGAGAATGAGGATGAACGTGACGGCGA]

[+] EMBL AL930386             [AGAATCCCNCGAGGTTCGATATTGATTGTGAGTGGGAACCTGCCCCTGATTCCGAACCCGATGTGTGAGAAGGCGGTTGGTTGCGGTTTGTGGAAGTGCTCCGATGGTACCGAACCCTAACTACAAGGGTAAATGGCGCCCGCCGCTTATCGCTAACGTAAACTACCAAGGAAAGTGGGCCCCGCGCAAGATTCCTAATCCTGGACTTCTTTGAAGATCTAACTGCCGTTCCTGAATGACACCTGATTGCCGCGGTAGGCATCGAACTTTGGTCCATGTCAAACGATATACTTGTTTGATAACATTGTTATTTGCGATGATGAATCCGTTGCTGACGAATGGGCTGCACAAACGTTCGATCTCAAAGTGAAGACGCTTGATCGGCAGGCGCAAACCCTATGGGACCNGAGCGATGCGGTCACATTAACTACAAGCCAGGCTATTGGGGAGCGTACTTTGTGTACTTGNNTCAATACCATTGATTGCCTACGTATGGTTCCTGTGGTCTCGACGCGATAAAGAGGGTGACGCCAAGGCCGGCAAATTTGGACGCAAGAAGAAGAATGACGATTATCCTGCAACGGAGCAAGAGCAGGACGAGCTGGTCGGTGGTGCTGGTGAGGAAGCGGAAGACGACGGACGATCCAGCCACAACAAANGCTGAATTGGCGCAG CACGGG                                                                        ]
[+] EMBL BM577394             [                                                                                                                     ccgCTACAAGGGTAAATGGCGCCCGCCGCTTATCGCTAACGTAAACTACCAAGGAAAGTGGGCCCCGCGCAAGATTCCTAATCC GGACTTCTTTGAAGATCTAAC GCCGTTCC GAATGACACC GATTGCCGCGGTAGGCATCGAACTTTGGTCCATGTCAAACGATATAC TGTTTGATAACATTGTTATTTGCGATGATGAATCCGTTGCTGACGAATGGGCTGCACAAACGTTCGATCTCAAAGTGAAGACGCTTGATCGGCAGGCGCAAACCCTATGGGACC GAGCGATGCGGT ACATTAACTACAAGCCAGGCTATTGGGGAGCGTACTTTGTGTAC TG CTCAATACCATTGATTGCCTACGTATGGTTCCTGTGGTCTCGACGCGATAAAGAGGGTGACGCCAAGG CGG AAA TTGGACGCAAGAAGAAGAATGACGATTATCCAGCACCGGAGCAAGAGCAGGACGAGCTGGTCGGTGGTGCTGGTGAGGAAGCGGAAGACGATGGACGATCCAG CAAAACAAA GCTGAA TGCCGCAGCCACGGGGTCCTCCGGTTCACGGTCAGCCAGCAGTGCCGGCGAAGCGTACGCAGAGAATGAGGATGAACGTGACGGCGA]




>consensus_8329#1
AGAATCCCNCGAGGTTCGATATTGATTGTGAGTGGGAACCTGCCCCTGATTCCGAACCCG
ATGTGTGAGAAGGCGGTTGGTTGCGGTTTGTGGAAGTGCTCCGATGGTACCGAACCCTAA
CTACAAGGGTAAATGGCGCCCGCCGCTTATCGCTAACGTAAACTACCAAGGAAAGTGGGC
CCCGCGCAAGATTCCTAATCCTGGACTTCTTTGAAGATCTAACTGCCGTTCCTGAATGAC
ACCTGATTGCCGCGGTAGGCATCGAACTTTGGTCCATGTCAAACGATATACTTGTTTGAT
AACATTGTTATTTGCGATGATGAATCCGTTGCTGACGAATGGGCTGCACAAACGTTCGAT
CTCAAAGTGAAGACGCTTGATCGGCAGGCGCAAACCCTATGGGACCNGAGCGATGCGGTC
ACATTAACTACAAGCCAGGCTATTGGGGAGCGTACTTTGTGTACTTGNNTCAATACCATT
GATTGCCTACGTATGGTTCCTGTGGTCTCGACGCGATAAAGAGGGTGACGCCAAGGCCGG
CAAATTTGGACGCAAGAAGAAGAATGACGATTATCCTGCAACGGAGCAAGAGCAGGACGA
GCTGGTCGGTGGTGCTGGTGAGGAAGCGGAAGACGACGGACGATCCAGCCACAACAAANG
CTGAATTGGCGCAGCACGGGGTCCTCCGGTTCACGGTCAGCCAGCAGTGCCGGCGAAGCG
TACGCAGAGAATGAGGATGAACGTGACGGCGA

consensusID : consensus_8329#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence 
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTGGAGATTGATGGACGATCCAGCAAAACAAAGCTGAATGCCGCAGCCACGGGGTCCTCCGGTTCACGGTCAGCCAGCAGTGCCGGCGAAGCGTACGCAGAGAATGAGGATGAACGTGACGGCGATGAGGCTGAAGAGGATGAGGAAGACGACGAAGCACAGGAAGAGGCTCAGGAAATGGAGGCCGGTGAAGAGGAAGCATCGTCAAGCGATGCACCAGTAGATAGCAAGAATTCGGAAGGCGGGGAAGGCCTTAAGAAGAGAAGAGCCCGCAAGGATTAGAAGCTAAGCGGGGAGGTAGAATGGTAGAACAATAACCTATGAGCCGTTAGATGTGGTTGCGTTTGCATGGTATAGTATCGATTGGTAAAGGACACCTAGAGAGGAAGGGCCCGTAATGTAATGTTTTCTTCTATCTCAGCCTGTATGTGCCC]

[+] EMBL BM577957             [CCGCCCACGCGTCCGCCCACGCGTCCGGTGGAGATTGATGGACGATCCAGCAAAACAAAGCTGAATGCCGCAGCCACGGGGTCCTCCGGTTCACGGTCAGCCAGCAGTGCCGGCGAAGCGTACGCAGAGAATGAGGATGAACGTGACGGCGATGAGGCTGAAGAGGATGAGGAAGACGACGAAGCACAGGAAGAGGCTCAGGAAATGGAGGCCGGTGAAGAGGAAGCATCGTCAAGCGATGCACCAGTAGATAGCAAGAATTCGGAAGGCGGGGAAGGCCTTAAGAAGAGAAGAGCCCGCAAGGATTAGAAGCTAAGCGGGGAGGTAGAATGGTAGAACAATAACCTATGAGCCGTTAGATGTGGTTGCGTTTGCATGGTATAGTATCGATTGGTAAAGGACACCTAGAGAGGAAGGGCCCGTAATGTAATGTTTTCTTCTATCTCAGCCTGTATGTGCCC]




>consensus_8329#2
CCGCCCACGCGTCCGCCCACGCGTCCGGTGGAGATTGATGGACGATCCAGCAAAACAAAG
CTGAATGCCGCAGCCACGGGGTCCTCCGGTTCACGGTCAGCCAGCAGTGCCGGCGAAGCG
TACGCAGAGAATGAGGATGAACGTGACGGCGATGAGGCTGAAGAGGATGAGGAAGACGAC
GAAGCACAGGAAGAGGCTCAGGAAATGGAGGCCGGTGAAGAGGAAGCATCGTCAAGCGAT
GCACCAGTAGATAGCAAGAATTCGGAAGGCGGGGAAGGCCTTAAGAAGAGAAGAGCCCGC
AAGGATTAGAAGCTAAGCGGGGAGGTAGAATGGTAGAACAATAACCTATGAGCCGTTAGA
TGTGGTTGCGTTTGCATGGTATAGTATCGATTGGTAAAGGACACCTAGAGAGGAAGGGCC
CGTAATGTAATGTTTTCTTCTATCTCAGCCTGTATGTGCCC

consensusID : consensus_8329#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 129
fasta sequence 
                              [CCGGCCCGTAGACATGCAATAGTATCGATTGGTAAAGGACACCTCGAGAGGGACCGTAATGTAATGTTTTCTTCTATCTCAGCCTGTATGTGCCCGTAGACATGCAATAATTATTTCCAAACTTTTAAG]

[+] EMBL BM597216             [CCGGCCCGTAGACATGCAATAGTATCGATTGGTAAAGGACACCTCGAGAGGGACCGTAATGTAATGTTTTCTTCTATCTCAGCCTGTATGTGCCCGTAGACATGCAATAATTATTTCCAAACTTTTAAG]




>consensus_8329#3
CCGGCCCGTAGACATGCAATAGTATCGATTGGTAAAGGACACCTCGAGAGGGACCGTAAT
GTAATGTTTTCTTCTATCTCAGCCTGTATGTGCCCGTAGACATGCAATAATTATTTCCAA
ACTTTTAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CCGGGAATGCGGCGGCTCCTACATAAAGCTCCTTTCCGTGGGCGACGGTACGAAGGATCT 60
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      GAAGCAGTTCCACGACAAAACACCGTACACGATTATGTTCGGACCGGACAAGTGTGGCAA 120
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CGATGTAAAGTTGCATTTCATTTTCCGACACGTTAACCCGATTAATGGTACCATCACGGA 180
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      GAAGCATTGCAACAAGCAGAAAGATCGGCTTGATGATCCGTTCAAAGACAAACGCCCCCA 240
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      TTTGTACCAATTGATTATTCGCCCGGACAACACGTACACCATACGAGTGGATCACAAAAC 300
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CGTCAACGAGGGCTCGTTGCTCACCAACTTTACGCCGGCAGTGAACCCGCCTGCTGAAAT 360
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CGATGACCCGGAGGACCGCAAGCCGGAGAACTGGGACGATCGCGAAAAAATCCCCGATCC 420
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CGAAGCGACCAAACCCGACGACTGGAACGAGGACGAACCGGCACAAATTCCCGACCCGAA 480
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      GGCTACCAAGCCGGCCGGCTGGTTGGACGATGTGGAGGAGATGGTACCGGACAGTTCGGC 540
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CGTGAAGCCGGAGGACTGGGACAACGATATGGGATGGTGAGTGGGAACCGCCCCTGATTC 600
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CGAACCCGATGTGTGAGAAGGCGGTTGGTTGCGGTTTGTGGAAGGCTCCGATGGTACCGA 660
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      ACCCTAACTACAAGGGTAAATGGCGCCCGCCGCTTATCGCTAACGTAAACTACCAAGGAA 720
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      AGTGGGCCCCGCGCAAGATTCCTAATCCGGACTTCTTTGAAGATCTAACGCCGTTCCGAA 780
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      TGACACCGATTGCCGCGGTAGGCATCGAACTTTGGTCCATGTCAAACGATATACTGTTTG 840
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      ATAACATTGTTATTTGCGATGATGAATCCGTTGCCGACGAATGGGCTGCACAAACGTTCG 900
consensus_8329#1      --------------------------------------------------AGAATCCCNC 10
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      ATCTCAAAGTGAAGACGCTTGATCGGCAGGCGGAAACCTTCGTTTCGCGTGTGCTTAAGT 960
consensus_8329#1      GAGGTTCGATATTGATTGTGAGTGGGAACCTGCCCCTGATTCCGAACCCGATGTGTGAGA 70
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      ACTGCAACAGCAATCCCTGGATGTGGGCTGTATTGATAGTAGTAGTGGGATTGCCAGTTG 1020
consensus_8329#1      AGGCGGTTGGTTGCGGTTTGTGGAAGTGCTCCGATGGTACCGAACCCTAACTACAAGGGT 130
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CTTTAATGATCTACTTCATGTGCTTTACCAAGGGTGACGCCAAGGCGGAAATTGGACGCA 1080
consensus_8329#1      AAATGGCGCCCGCCGCTTATCGCTAACGTAAACTACCAAGGAAAGTGGGCCCCGCGCAAG 190
                                                                                  

consensus_8329#2      --------------------------------------------CCGCCCACGCGTCCGC 16
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      AGAAGAAGAATGACGATTATCCAGCACCGGAGCAAGAGCAGGACGAGCTGGTCGGTGGTG 1140
consensus_8329#1      ATTCCTAATCCTGGACTTCTTTGAAGATCTAACTGCCGTTCCTGAATGACACCTGATTGC 250
                                                                                  

consensus_8329#2      CCACGCGTCCGGTGGAGATTGATGGACGATCCAGCAAAACAAAGCTGAATGCCGCAGCCA 76
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CTGGTGAGGAAGCGGAAGACGACGGACGATCCAGCAAAACAAAGCTGAATGCCGCAGCCA 1200
consensus_8329#1      CGCGGTAGGCATCGAACTTTGGTCCATGTCAAACGATATACTTGTTTGATAACATTGTTA 310
                                                                                  

consensus_8329#2      CGGGGTCCTCCGGTTCACGGTCAGCCAGCAGTGCCGGCGAAGCGTACGCAGAGAATGAGG 136
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CGGGGTCCTCCGGTTCACGGTCAGCGAGCAGTGCCGGCGAAGCGTACGCAGAGAATGAGG 1260
consensus_8329#1      TTTGCGATGATGAATCCGTTGCTGACGAATGGGCTGCACAAACGTTCGATCTCAAAGTGA 370
                                                                                  

consensus_8329#2      ATGAACGTGACGGCGATG---AGGCTGAAGAGGATGAGGAAGACGACGAAGCACAGGAAG 193
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      ATGAACGTGACGGCGATG---AGGCTGAAGAGGATGAGGAAGACGACGAAGCACAGGAAG 1317
consensus_8329#1      AGACGCTTGATCGGCAGGCGCAAACCCTATGGGACCNGAGCGATGCGGTCACATTAACTA 430
                                                                                  

consensus_8329#2      AGGCTCAGGAAATGGAGGCCGGTGAAGAGGAAGCATCGTCAAGCGATGCACCAGTAGATA 253
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      AGGCTCAGGAAATGGAGGCCGGTGAAGAGGAAGCATCGTCAAGCGATGCACCAGTAGATA 1377
consensus_8329#1      CAAGCCAGGCTATTGGGGAGCGTACTTTGTGTACTTGNNTCAATACCATTGATTGCCTAC 490
                                                                                  

consensus_8329#2      GCAAGAATTCGGAAGGCGGGGAAGGCCTTAAGAAGAGAAG---AGCCCGCAAGGATTAGA 310
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      GCAAGAATTCGGAAGGCGGGGAAGGCCTTAAGAAGAGAAG---AGCCCGCAAGGATTAGA 1434
consensus_8329#1      GTATGGTTCCTGTGGTCTCGACGCGATAAAGAGGGTGACGCCAAGGCCGGCAAATTTGGA 550
                                                                                  

consensus_8329#2      AGCTAAGCGGGGAGGTAGAATGGTAGAACAATAACCTATGAGCCGTTAGATGTGGTTGCG 370
consensus_8329#3      ----------------------------------------------------CCGGCCCG 8
consensus_8329#0      AGCTAAGCGGGGAGGTAGAATGGTAGAACAATAACCTATGAGCCGTTAGATGTGGTTGCG 1494
consensus_8329#1      CGCAAGAAGAAGAATGACGATTATCCTGCAACGGAGCAAGAGCAGGACGA-GCTGGTCGG 609
                                                                            *    *

consensus_8329#2      TTTGCATGGTATAGTATCGATTGGTAAAGGAC-ACCTAG-------AGAGG--AAGGGCC 420
consensus_8329#3      TAGACATGCAATAGTATCGATTGGTAAAGGAC-ACCTCG-------AGAGG--GA----C 54
consensus_8329#0      TTTGCATGGTATAGTATCGATTGGTAAAGGAC-ACCTAG-------AGAGG--AAGGGCC 1544
consensus_8329#1      TGGTGCTGGTGAGGAAGCGGAAGACGACGGACGATCCAGCCACAACAAANGCTGAATTGG 669
                      *     **     * * **   *   * **** * *  *       * * *   *     

consensus_8329#2      CGTAATGTAATGTTTTC---TTCTATCTCAGCCTGTATGTGCCC---------------- 461
consensus_8329#3      CGTAATGTAATGTTTTC---TTCTATCTCAGCCTGTATGTGCCCGTAGA---CATGCAAT 108
consensus_8329#0      CGTAATGTAATGTTTTC---TTCTATCTCAGCCTGTATGTGCCCGTAGA---CATGCAAT 1598
consensus_8329#1      CGCAGCACGGGGTCCTCCGGTTCACGGTCAGCCAGCA-GTGCCGGCGAAGCGTACGCAGA 728
                      ** *       **  **   ***    ****** * * *****                 

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      AATTATTTCCAAACTTTTAAG--------------------------------------- 129
consensus_8329#0      AATTATTTCCAAACTTTTAAGTTATCTTGACAGTCGGGTTCATTTTTTTTGTTAGCTCAT 1658
consensus_8329#1      GAATGAGGATGAACGTGACGGCGA------------------------------------ 752
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CTCACATAGTTCTTAATAGCTTTCGATCTGGTCTAAAATTAGCCCCTGCTGGGTCGAATC 1718
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      GTCGTGTGTGCGCATAGGGCACGCGTGTATTCTTACGCAAGTCGCGTGTGAACGGCTCCA 1778
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CCCACGGGATCGGCCCCATATTTATTCCCAAGAGACCCCTGCTGGGTGTGCAAGTTAACA 1838
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      AACAAGTTAAGGTCAGGCTAGCTTTTCCATCGCCGAATTATTGCTTACAATAATGCATTT 1898
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CTCCGCGGTGTGTACAACGTTACGTTTGTACTTCTGTTAGCTGAAATTAAACCAGACGAA 1958
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      ACAACAACAAAAACGAGCGGGGAACAGTAAATAGAGCGTAACGGTTAAGCAATTTGGATA 2018
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      CATTTTTTTGCATATATACTTAGCACCAAAGGAAAAATGGCTCTAGTTTAAGTGAACGAT 2078
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      TCTAAACTAACATACGGAAGGGCGAGGGTGGGTATGTAAGTGCATTTGCAGCTGCTGAAA 2138
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      ------------------------------------------------------------
consensus_8329#3      ------------------------------------------------------------
consensus_8329#0      TAGTTTCATCCATTGATTATGTGTGGCATTTAGAGATTTCCTTTGTCTTTCAATTTGTTT 2198
consensus_8329#1      ------------------------------------------------------------
                                                                                  

consensus_8329#2      -------------------------
consensus_8329#3      -------------------------
consensus_8329#0      CGGAGTAAATTAGAACTACACTTTG 2223
consensus_8329#1      -------------------------


Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)