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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1069 fasta sequence
[CCGCATCGATTCCGAACAAAACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGCAAACAATCATCGATACTG-TTGGACTGTGGCGAAGGAACCGTGGGGCAGATATGGCGAGTTTTTGGGAAAG-AGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA-TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA-GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT-ACACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTAACACACTTTAGCCAGCGGTACGCC-AAAATTCCCCGCCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATTTGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGGAAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGTTACGCCTCGAAACGGTTAAAACAGCTACCGGCAGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATAGAATAGGGATTGGTAAGGAACAATCTTTTAAAATAGTGAAATAAAACATGAAATTAAAAGCAAATTTTCAT]
[+] EMBL BM614754 [CCGCATCGATTCCGAACAAAACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGTAAACAATCATCGATACTG TTGGACTGTGGCGAAGGAACCGTGGGGCAGATATGGCGAGTTTTTGGGAAAG AGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCATTTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGTAACACTGTCGCAGGCAATC ]
[+] EMBL CNS08VVU [ GTACCATTTTGATCTTGACTAGCAAACAATCATCGATACTG TTGGACTGTGGCGAAGGAACCGTGGGGCAGATATGGCGAGTTTTTGGGAAAG AGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT ACACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTAACACACTTTAGCCAGCGGTACGCCAAAAATTCCCCGCCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATTTGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGGAAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGTTACGCCTCGAAACGGTTAAAACAGCTACCGGCAGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATA ]
[+] EMBL CNS08V8K [ GCAAACAATCATCGATACTGTTTGGACTGTGGCGAAGGAACCGTGGGGCAGATATGGCGAGTTTTTGGGAAAGAAGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAA CCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCAC ]
[-] EMBL CNS08VVV [ AGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT AAACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTTACACACTTTAGCCAGCGGTACGCC AAAATTCCCC CCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATTTGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGGAAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGTTACGCCTCGAAACGGTTAAAACAGCTACCGGCAGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATAGAATAGGGATTGGTAAGGAACAATCTTTTAAAATAGTGAAATAAAACATGAAATTAAAAGCAAATTTTCAT]
[+] EMBL BX619154 [ aatnnGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT ACACTGTCGCAGGCAATCGAACAGGGCCGTAANATGAATGCACGATACACGCTGCTAn ]
[+] EMBL BX620224 [ GCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGNTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT ACACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTAACACACTTTAGCCAGCGGTACGCC AAAATTCCCCGCCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACNACATGGAAGTAACGCTGGA ]
[-] EMBL CNS08V8L [ AAACGAAAATCGAACGGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTAATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT AAACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTTACACACTTTAGCCAGCGGTACGCC AAAATTCCCC CCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATTTGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGGAAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGTTACGCCTCGAAACGGTTAAAACAGCTACCGGCAGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATAGAATAGGGATTGGTAAGGAACAATCTTTTAAAATAGTGAAATAAAACATGAAATTAAAA ]
[+] EMBL CNS08N3U [ TTGCGAAACCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT ACACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTAACACACTTTAGCCAGCGGTAC CC AAAATTCCCCGCCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATTTGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGGAAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGT ]
[-] EMBL CNS08N3V [ AGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATAGAATAGGGATTGGTAAGGAACAATCTTTTAAAATAGTGAAATAAAACATGAAATTA ]
consensusID : consensus_8378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence
[CTTCCCGCTGCTAAGAGAGGAAAACAATCAGTATGCGGATCCTCCAGCAAACGACACAGATTTGGTGCGATCGTCTTCGCTGAGTTACATGCACATTCGACCACCGAAAGGCATCGATAGAACGCTGGAGGCATCCTTGAATCCGCAAGAGTACCTTAATGAACTGGAGCTGTTACCGGACTTTAAAGAGGCACTTGCTGAATTGAAGCAACAACTCGCACAACACACCGCTCGAAGGTCTGCCGCGGTTAGGGCAGAGCAATTTCCACGCTTAATTTTTCTCGGCACCGGATCATCGATTCCAAACAAAACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGCAAACAATCATCGATACTGTTGGACTGTGGCGAAGGAACCGTGGGACAGATTTGGCGAGTTTTTGGGAAAGAGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTATGAACATACATTTCAAAATTTTTACAAATTCCTATTGTGAAAGGCTAAAAATTGTATCAATTCATGTCACTTTCAGGTTTGATTGGTCTGTTACAAGCTCGCAAGAAGCTGTTGGGTGATAATTGTGAATGCTTAACTCTGGTGGCACCGGAACAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTACTTGTAAAGAATGCTGATCTGTTGGA]
[+] EMBL BX613532 [CTTCCCGCTGCTAAGAGAGGAAAACAATCAGTATGCGGATCCTCCAGCAAACGACACAGATTTGGTGCGATCGTCTTCGCTGAGTTACATGCACATTCGACCACCGAAAGGCATCGATAGAACGCTGGAGGCATCCTTGAATCCGCAAGAGTACCTTAATGAACTGGAGCTGTTACCGGACTTTAAAGAGGCACTTGCTGAATTGAAGCAACAACTCGCACAACACACCGCTCGAAGGTCTGCCGCGGTTAGGGCAGAGCAATTTCCACGCTTAATTTTTCTCGGCACCGGATCATCGATTCCAAACAAAACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGCAAACAATCATCGATACTGTTGGACTGTGGCGAAGGAACCGTGGGACAGATTTGGCGAGTTTTTGGGAAAGAGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTATGAACATACATTTCAAAATTTTTACAAATTCCTATTGTGAAAGGCTAAAAATTGTATCAATTCATGTCACTTTCAGGTTTGATTGGTCTGTTACAAGCTCGCAAGAAGCTGTTGGGTGATAATTGTGAATGCTTAACTCTGGTGGCACCGGAACAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTACTTGTAAAGAATGCTGATCTGTTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8378#0 CCGCATCGATTCCGAACAAAACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGCAAAC 60
consensus_8378#1 ------------------------------------------------------------
consensus_8378#0 AATCATCGATACTGTTGGACTGTGGCGAAGGAACCGTGGGGCAGATATGGCGAGTTTTTG 120
consensus_8378#1 ------------------------------------------------------------
consensus_8378#0 GGAAAGAGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTAC 180
consensus_8378#1 ------------------------------------------------------------
consensus_8378#0 ATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTG 240
consensus_8378#1 ------------------------------------------------------------
consensus_8378#0 ATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGT 300
consensus_8378#1 ---------------------------------------CTTCCCGCTG-CTAAGAGAGG 20
**** *** ** ** *
consensus_8378#0 ACGATTGTCGGTT--CGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCT 358
consensus_8378#1 AAAACAATCAGTATGCGGATCCTCCAGCAAACGACACAGATTTG----GTGCGATCGTCT 76
* * ** ** ** * ** * **** * *** * * * ***
consensus_8378#0 GTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCAC 418
consensus_8378#1 -TCGCTGAGTTACATGCACATTCGACCACCGAAAGGCATCGATAGAACGCTGGAGGCATC 135
* * * * * ** * * * * ** * * * * * * ** *
consensus_8378#0 CTGTCGCGTTCGCCACTGT-CCCCATTCGTTCGGGGTCGCG-------TTGAAAGTGGCA 470
consensus_8378#1 CT--TGAATCCGCAAGAGTACCTTAATGAACTGGAGCTGTTACCGGACTTTAAAGAGGCA 193
** * * *** * ** ** * * ** * * ** **** ****
consensus_8378#0 TCGCTTGGAACGCACCCGGAAACGAACATCGAAGGAGATGTAAAAATCACGTACAGTGGC 530
consensus_8378#1 CTTGCTGAATTG-AAGCAACAACTCGCACAACACACCGCTCGAAGGTCTGCCGCGGTTAG 252
** * * * * *** ** * ** ** * **
consensus_8378#0 GACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACAC 590
consensus_8378#1 GGCAGAGCAATTTCC--ACGCTTAATTTTTCTCGGCACCGGATC-ATCGATTCCAAACAA 309
* ** ** * * ** * ** ** *** * ** * ** ** ***
consensus_8378#0 GAGGC--AACGATGGAGGA----TGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT 644
consensus_8378#1 AACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGCAAACAATCATCGATAC-TGTTGG 368
* ** **** * * * *** ** * * * ** **** * * *
consensus_8378#0 ACACTGTCGCAGGCA--ATCGAACAGGGCCGTAAAATGAATGCACGATA-CACGCTGCTA 701
consensus_8378#1 ACTGTGGCGAAGGAACCGTGGGACAGATTTGGCGAGTTTTTGGGAAAGAGCAAGCAGAAG 428
** ** ** *** * * * **** * * * ** * * ** ** *
consensus_8378#0 ACACACTTTAGCCAGCGGTAC--GCCAAAATTCCCCGCCTCCGGCCAGATCAGCAGCAGA 759
consensus_8378#1 AAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATC--- 485
* * * * * * * * *** * * *** * ******* ** *
consensus_8378#0 CGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATT 819
consensus_8378#1 TAGGTATGAACATACATTTCAAAAT----TTTTACAAATTCCTATTG----TGAAAGGCT 537
** ** ** ** * ** ** **** * * * ** * * *
consensus_8378#0 TGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGG 879
consensus_8378#1 A---AAAATTGTATCAATTC-ATGTCACTTTCAG-GTTTGATTGGTCTGTTAC------- 585
** ***** * * *** ** * * * * * ** ** ** **
consensus_8378#0 AAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGTTACGCCTCGAAACGGTTAAAA 939
consensus_8378#1 AAGCTCGCAAGAAGCTGTTGGGTGATAATTGTGAATGCTTAACTCTGGTGGCACCGGAAC 645
** ***** * * ** *** ** * * **
consensus_8378#0 CAGCTACCGGC-AGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATA 998
consensus_8378#1 AAATTTCCTACTGGCTGAGGCTGTACGATTGT-CGGTTCGAAACCATCC------ACAAA 698
* * ** * ** ** *** ** ** * * * * ** *** *
consensus_8378#0 GAATAGGGATTGGTAAGGAACAATCTTTTAAAATAGTGAAATAAAACATGAAATTAAAAG 1058
consensus_8378#1 GACTATGTACTTGTAAAGAATGCTGATCTGTTGGA------------------------- 733
** ** * * * **** *** * * * *
consensus_8378#0 CAAATTTTCAT 1069
consensus_8378#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||