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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CCGATCCAACGCAAACTCGACAAGAGTGGGCTGGATAAGGAAGCTGCTGTTGAATTTAAGAATATTGATCTAACCGTACGTAAGCTAATCCACGATGGGCCTTTAACGATGAAGAAGAATCCAGGTGTACAACTGCATGGGCTGCTGTTCGAAGATATCATGGTGTTGCTGCAGAAGCAGGACGACAAGTATCTTGTCAAGTATCACTCTAGTCCCGGGCTCGGCGGAAGCGAAAGCAAGTACGCCGAGGGCCGCTTTAATCCGATCACCAAAATCCATCTCATCCTGGTGCGACAGAGCGCCGTCGACAAAAACACGTTCTTCCTAATCAACACCAACGTCTCGCAGATGCTGGAACTGACCGCGCCGAGCAGCACCGAGTGCAAAACATGGTTTAAGCATATTTCCGATGCCGCCGAAGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGGTGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACAGACCTCGACGCCGATCGAGCGACTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAGCAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCAGCAGCAACAGTCACCTGCGA]
[+] EMBL BM616946 [CCGATCCAACGCAAACTCGACAAGAGTGGGCTGGATAAGGAAGCTGCTGTTGAATTTAAGAATATTGATCTAACCGTACGTAAGCTAATCCACGATGGGCCTTTAACGATGAAGAAGAATCCAGGTGTACAACTGCATGGGCTGCTGTTCGAAGATATCATGGTGTTGCTGCAGAAGCAGGACGACAAGTATCTTGTCAAGTATCACTCTAGTCCCGGGCTCGGCGGAAGCGAAAGCAAGTACGCCGAGGGCCGCTTTAATCCGATCACCAAAATCCATCTCATCCTGGTGCGACAGAGCGCCGTCGACAAAAACACGTTCTTCCTAATCAACACCAACGTCTCGCAGATGCTGGAACTGACCGCGCCGAGCAGCACCGAGTGCAAAACATGGTTTAAGCATATTTCCGATGCCGCCGAAGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGGTGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACAGACCTCGACGCCGATCGAGCGACTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAGCAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCAGCAGCAACAGTCACCTGCGA]
consensusID : consensus_838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[CCGCCCACGCGTCCGGTGATTTTTGAAGTTCGAAAAAATGATGAACTTAACAGTGCCTGCCGTTACGGGCAGGTTGCGGCGCAAAAGCATTGCCGCAGAGGTGGCCCACTGTTTGCCGGAGCTTCGCTTCGACGACGGTACCGGTGGTTCGGCGAAGCAGCACACGAAGCGCCGTGGCAGCCTTGGAGGGGAACCGATCCGTCGGCCATCACTCGTTTCCAGATGGTTTAAGCATATTTCCGATGCCGCCGAAGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGGTGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACAGACCTCGACGCCGATCGAGCGGCTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAGCAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCAGCAGCAACAGTCACCTGCGAGTCAGCAAGCTGCCGGTCAGCCGCACCACCACCACCATCATCCTCACTCCGGTGGTGGTCGATCGGATGACTCGCGCCCTCCCGTCCGTG]
[+] EMBL BM624770 [CCGCCCACGCGTCCGGTGATTTTTGAAGTTCGAAAAAATGATGAACTTAACAGTGCCTGCCGTTACGGGCAGGTTGCGGCGCAAAAGCATTGCCGCAGAGGTGGCCCACTGTTTGCCGGAGCTTCGCTTCGACGACGGTACCGGTGGTTCGGCGAAGCAGCACACGAAGCGCCGTGGCAGCCTTGGAGGGGAACCGATCCGTCGGCCATCACTCGTTTCCAGATGGTTTAAGCATATTTCCGATGCCGCCGAAGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGGTGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACAGACCTCGACGCCGATCGAGCGGCTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAGCAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCAGCAGCAACAGTCACCTGCGAGTCAGCAAGCTGCCGGTCAGCCGCACCACCACCACCATCATCCTCACTCCGGTGGTGGTCGATCGGATGACTCGCGCCCTCCCGTCCGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_838#0 CCGATCCAACGCAAACTCGACAAGAGTGGGCTGGATAAGGAAGCTGCTGTTGAATTTAAG 60
consensus_838#1 ------------------------------------------------------------
consensus_838#0 AATATTGATCTAACCGTACGTAAGCTAATCCACGATGGGCCTTTAACGATGAAGAAGAAT 120
consensus_838#1 ------------------------------------------------------------
consensus_838#0 CCAGGTGTACAACTGCATGGGCTGCTGTTCGAAGATATCATGGTGTTGCTGCAGAAGCAG 180
consensus_838#1 ------------------------CCGCCC--ACGCGTC-CGGTGATTTTTGAAGTTCGA 33
* * * * ** **** * * * *
consensus_838#0 GACGACAAGTATCTTGTCAAGTATCACTCTAGTCCCGGGCTCGGCG-GAAGCGAAAGCAA 239
consensus_838#1 AAAAATGATGAACTTAACAG---TGCCTGCCGTTACGGGCAGGTTGCGGCGCAAAAGCAT 90
* * * * *** ** * ** ** ***** * * * ** ******
consensus_838#0 GTACGCCGAGGGCCGCTTTAATCCGATCACCAAAATCCATCTCATCCTGGTGCGACAGAG 299
consensus_838#1 TGCCGCAGAGG--TGGCCCA--CTGTTTGCCGGAGCTTCGCTTCGACGACGGTACCGGTG 146
*** **** * * * * * ** * ** * * * * *
consensus_838#0 CGCCGTCGACAAAAACACGTTCTTCCTAATCAACACCAACGTCTCGCAGATGCTGGAACT 359
consensus_838#1 GTTCGGCGA-AGCAGCACA------CGAAGCGCCGTGGCAGCCTTGGAGG----GGAACC 195
** *** * * *** * ** * * * ** * ** *****
consensus_838#0 GACCGCGCCGAGCAGCACCGAGTGCAAAACATGGTTTAAGCATATTTCCGATGCCGCCGA 419
consensus_838#1 GATC-CGTCGGCCATCACTCGTTTCCAGA--TGGTTTAAGCATATTTCCGATGCCGCCGA 252
** * ** ** ** *** * * * * *****************************
consensus_838#0 AGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGG 479
consensus_838#1 AGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGG 312
************************************************************
consensus_838#0 TGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACA 539
consensus_838#1 TGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACA 372
************************************************************
consensus_838#0 GACCTCGACGCCGATCGAGCGACTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAG 599
consensus_838#1 GACCTCGACGCCGATCGAGCGGCTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAG 432
********************* **************************************
consensus_838#0 CAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCA 659
consensus_838#1 CAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCA 492
************************************************************
consensus_838#0 GCAGCAACAGTCACCTGCGA---------------------------------------- 679
consensus_838#1 GCAGCAACAGTCACCTGCGAGTCAGCAAGCTGCCGGTCAGCCGCACCACCACCACCATCA 552
********************
consensus_838#0 --------------------------------------------------
consensus_838#1 TCCTCACTCCGGTGGTGGTCGATCGGATGACTCGCGCCCTCCCGTCCGTG 602
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||