cluster # 8424

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Anopheles gambiae
cluster # 8424 cluster # 8424 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8424#0 length = 476 sequences # 3

consensus_8424#1 length = 410 sequences # 7

consensusID : consensus_8424#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 476
fasta sequence

                              [CTGGAATCGTTTCATTCATAACGCTGTTGTAGTAATTGTATCGAACGTACATCATGAAAGGTAATTTAAAGTGAAA-ACTGCAAGT--AAATTGCGATTCAAATGATGGACTGTCCACGGTTTTCAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAGGATTTTTGTGACTTTCCCGAGGAAGCAAACTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATCAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT]

[+] EMBL CNS09GVY             [CTGGAATCGTTTCATTCATAACGCTGTTGTAGTAATTGTATCGAACGTACATCATGAAAGGTAATTTAAAGTGAAA ACTGCAAGT  AAATTGCGATTCAAATGATGGACTGTCCACGGTTTTCAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCCGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAAATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAGGATTTTTGTGACTTTCCCGAGGAAGCAAACTGCGAACGGCCGCTGCAAATTGACCCGTAATGGTTCGATTAATTAAGTGAATAAAATCTTTTATTATCAAAATTATAATGTGGTTAAAATATGTTTCTGTTAGCGATATATTTGACGGT]
[+] EMBL BM623967             [                 ccgACGCTGTTGTAGTAATTGTATCGAACGTAAATCATGAAAGGTAAATTAAAGTGAAACACTGCAAGTAAAAATTGCGAGCCAAATATTTGACTGTCCACGGGTTTTAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCTGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTACACATTCCCCACTTTTCCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATTAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT]
[+] EMBL BX628230             [                                                                                                                               GTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTATGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTTCACCCGGTTCACATTCCTCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAACATCGAGAAGGATTTTTGTGACTTTCCCGAGGAAGCAAACTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATGAACTAAGTGAATAAAATTTTTTATTATCAAAATTAAAATGTGGTTAAAATATG    TGT  GCGATATATTTGACAGT]




>consensus_8424#0
CTGGAATCGTTTCATTCATAACGCTGTTGTAGTAATTGTATCGAACGTACATCATGAAAG
GTAATTTAAAGTGAAAACTGCAAGTAAATTGCGATTCAAATGATGGACTGTCCACGGTTT
TCAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGAC
ATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTT
ACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCG
GCCGGTTTGCACTGGAATATCGAGAAGGATTTTTGTGACTTTCCCGAGGAAGCAAACTGC
GAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTA
TTATCAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT

consensusID : consensus_8424#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 410
fasta sequence

                              [CCGCCCACGCGTCCGACCGCGCTGTTGTAGTAATTGTATCGAACGTAAATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATTAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT]

[+] EMBL BM626738             [CCGCCCACGCGTCCGATAACGCTGTTGTAGTAATTGTATCGAACGTAAATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCTGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTACACATTCCCCACTTTTCCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATTAA                                                 ]
[+] EMBL BM580599             [                CCGCGCTGTTGTAGTAATTGTATCGAACGCAAATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCTCACTTTACCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAGGATTTTTGTGACTTTCCCGATGAAGCTAACTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCAATCAAcatgt                                                                        ]
[+] EMBL BM598609             [                CCGCGCTGTTGTAGTAATTGTATCGAACGTAAATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCTGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTACACATTCCCCACTTTTCCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATT                                                   ]
[+] EMBL BM610697             [                CCGCGCTGTTGTAGTAATTGTATCGAACGTACATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATc                                                   ]
[+] EMBL BM626452             [                  GCGCTGTTGTAGTAATTGTATCGAACGTACATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATc                                                   ]
[+] EMBL BM621894             [                         ccgAGTAATTGTATCGAACGTAAATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCTGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTACACATTCCCCACTTTTCCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGT AATAAAATCTTTTATTATTAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT]
[+] EMBL BM635278             [                                    ccgCGAACGTACATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATc                                                   ]




>consensus_8424#1
CCGCCCACGCGTCCGACCGCGCTGTTGTAGTAATTGTATCGAACGTAAATCATGAAAGGT
GCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCG
CTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGAT
TGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGT
TTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGG
CCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATTA
AAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8424#0      CTGGAATCGTTTCATTCATAACGCTGTTGTAGTAATTGTATCGAACGTACATCATGAAAG 60
consensus_8424#1      ------------------------------------------------------------
                                                                                  

consensus_8424#0      GTAATTTAAAGTGAAAACTGCAAGTAAATTGCGATTCAAATGATGGACTGTCCACGGTTT 120
consensus_8424#1      -CCGCCCACGCGTCCGACCGCGCTGTTGTAGTAATTGTATCGAACG-TAAATCATGAA-- 56
                             *        ** **       * *  ***  *  **  *      ** *    

consensus_8424#0      TCAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGAC 180
consensus_8424#1      --AGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGAC 114
                        **********************************************************

consensus_8424#0      ATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTT 240
consensus_8424#1      ATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTT 174
                      ************************************************************

consensus_8424#0      ACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCG 300
consensus_8424#1      ACCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCG 234
                      ******** ***************************************************

consensus_8424#0      GCCGGTTTGCACTGGAATATCGAGAAGGATTTTTGTGACTTTCCCGAGGAAGCAAACTGC 360
consensus_8424#1      GCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGC 294
                      ************************** ************************** * ****

consensus_8424#0      GAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTA 420
consensus_8424#1      GAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTA 354
                      ************************************************************

consensus_8424#0      TTATCAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT 476
consensus_8424#1      TTATTAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT 410
                      **** ***************************************************