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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1197 fasta sequence
[GCAAGAATTCCGCACGATGGTCGACGACGACGGGTCAGCCAAGCCCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGAT--CCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG-GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCGGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG-ACGAAAACGCGCCCGGAATTTGT-GGAGAAAGCGGTCAAGCTTGGCTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC-AGCTTTGTGCCCGATCCGGACGTCAGTGCCG-TGATCGTTGGGTTCGATGAA-CACTTTA-GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG-AACAATCCGGACGTTATATTCATTGGCACGAACA-CGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCAGGCGATGGTGACCTGCTCCGAGCGGGAACCGATCGTGAT-GGGCAAACCGAACCCACACATCTGCGAGATTATCCGCCGGGAGTACGATGTGGATCCGGCCCGTACGCTCA-TGATTGGCGATCGGTGC-AATACGGACATTTTGCTGGGGAAGAATTGTGACTTCCAGACGCTGCTGGTCGAAACGGGTATACACAA-GGCGGAGGATATAGCAAAGTACGGACAGTCGGAGGATCCGGCGGTGAGGGAACTGGTGCCGGATGTGTATCTACCTAAGCTGGGTGACTAACTGCCGTATCTATGATGAGAGGGGGATGGCTGAGAGGTGCTTGTAAATGCTGTAAGATTGTTTCAGCATGAGATGGTGCGAAAGTGTAACCGTTGTTTTAAACAATTGGTTTGTGAGAGTGTTG-AAAAAAATACCTCAATAAATGTGCGC-TTAAACAAAATAGGTAACAATAA]
[+] EMBL BX468270 [GCAAGAATTCCGCACGATGGTCGACGACGACGGGTCAGCCAAGCCCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGAT CCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCGGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTTGCTTTAATGTCACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCCAAGCTTTGTGCCCGATCCGGACGTCAGTGCCG TGATCGTTGGGTTCGATGAAGCACTTTAGGCTTCGTCAAGATGATGAA ]
[+] EMBL BM644224 [ ccgCAAGCCCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGAT CCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCTGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTGGCTTTAATGTCACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC AGCTTTGTGCCCGATCCGGACGTCAGTGCCGATGATCGTTGGGTTCGATGAG CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTGAAACAATCCGGACGTTATATTCATTGGCACGAACACCGGATGAGCGGTTCCCGATGCCGGACCGGGTTA ]
[+] EMBL BX628293 [ CCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGAT CCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCGGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTGGCTTTAATGTCACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC AGCTTTGTGCCCGATCCGGACGTCAGTGCCG TGATCGTTGGGTTCGATGAG CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG AACAATCCGGACGTTATATTCATTGGCACGAACA CGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCAGGCGATGGTGACTTGCTCCGAGCGGGAACCGATCG ]
[+] EMBL CNS09AUP [ CCGGACG AATAAACAATCGCTTTCTGTGTGTTTTATGTCCTTTTTAACCCTTTTAGCTTCCATCGACTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCGCGCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACGACCCGCTGCCCGGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCGTACGAAAACGCGCCCGGAATTTGTGGGAGAAAGCGGTCAAGCTTGGCTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCAGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCA ]
[+] EMBL BX620187 [ TTCTGTGTGTTTTATGTCCTTTTTAACCCGAT CCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCTGGGGCGCCCGAGGTGATAAATCGTTTCATTGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTGGCTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC AGCTTTGTGCCCGATCCGGACGTCGGTGCCG TGATCGTTGGGTTCGATGAA CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG AACAATCCGGACGTTATATTCATTGGCACGAACA CGGATGAGCGGT ]
[+] EMBL BX628012 [ GCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCTGGGGCGCCCGAGGTGATAAATCGTTTCATTGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTGGCTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC AGCTTTGTGCCCGATCCGGACGTCGGTGCCG TGATCGTTGGGTTCGATGAA CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG AACAATCCGGACGTTATATTCATTGGCACGAACA CGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCANGCGATGGTGACCTGCTCCGAGCGGGAACCGATCGTGATGGGGCAAACCGAANCCACACATCTGCGANATTATCCGCCGGGAGTACGATGTGGATCCGGCCCGTACGCTCA T ]
[+] EMBL BX616959 [ CGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCTGGGGCGCCCGAGGTGATAAATCGTTTCATTGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTGGCTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC AGCTTTGTGCCCGATCCGGACGTCGGTGCCG TGATCGTTGGGTTCGATGAA CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG AACAATCCGGACGTTATATTCATTGGCACGAACA CGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCAGGCGATGGTGACCTGCTCCGAGCGGGAACCGATCGTGAT GGGCAAACCGAACCCACACATCTGCGAGATTATCCGCCGGGAGTACGATGTGGATCCGGCCCGTACGCTCA TGATTGGCGATCGGTGC AATACGGACATTTTGCTGGGGAAGAATTGTGACTTCCAGACGCTGCTGGTCGAAACGGGTATACACAAGGGCGGAGGATATAGCTAAG ]
[-] EMBL CNS09DGM [ TCCGGACGTTAGTGCCG TGATCGTTGGGTTCGATGAG CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG AACAATCCGGACGTTATATTAATTGGCACGAACA CGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCAGGCGATGGTTACTTGCTCCGAGCGGGAACCGATCGTAAT GGGCAAACCGAACCCAGACATCTGCGAGTTCATACGCCGGGAGTACGATGTGGATCCTGCCCGTACGCTCA TTATTGGGGATCGGTGCAAATACGGACATTTTGCTGGGGAAGAATTGTGACTTCCAGACGCTGCTGGTCGAAACGGGTATACACAA GGCGGAGGATATAGCAAAGTACGGACAGTCGGAGGATCCGGCGGTGAGGGAACTGGTGCCGGATGTGTATCTACCTAAGCTGGGTGACTAACTGCCGTATCTATGATGAGAGGGGGATGGCTGAGAGGTGCTTGTAAATGCTGTAAGATTGTTTCAGCATGAGATGGTGCGAAAGTGTAACCGTTGTTTTAAACAATTGGTTTGTGAGAGTGTTG AAAAAAATACCTCAATAAATGTGCGC TTAAACAAAATA ]
[-] EMBL CNS09AUQ [ TATTCATTGGCACGAACA CGGACGAGC GTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCAGGCGATGGTGACCTGCTCCGAGCGGGAACCGATTGTGAT GGGCAAACCGAACCCACACATCTGCGAGATTATCCGCCGGGAGTACGATGTGGATCCGGCCCGTACGCTCATTGATTGGCGATCGGTGC AATACGGACATTTTGCTGGGGAAGAATTGTGACTTCCAGACGCTGCTGGTCGAAACGGGTATACACAA GGCGGAGGATATAGCAAAGTACGGACAGTCGGAGGATCCGGCGGTGAGGGCACTGGTGCCGGATGTGTATCTACCTAAGCTGGGTGACTTACTGCCGTATCTGTGATGAGTGGGGGATGGCTGAGAGGTGCTTGTAAGTGCTGTAAGATTGTTTCAGCATGAGATGGTGCGAAAGTGTAACCGTTGTTTTAAACAATTGGTTCGTGAGAGTGTTGAAAAAAAATACCTCAATAAATGTGCGCTTTTGGCAAAATGGGTAACAATAA]
consensusID : consensus_8426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[CTGGGTGACTTTACGGGTAGCAAGCCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGATCCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCGGCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCGGGGCGCCCGAGGTGATAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCCCCCTTTGTGCCCGATCCGGACGTCAGTACCGTGATCGTTGGGTTCGATGAGCACTTTAGCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTGAACAATCCGGACGTTATATTCATTGGCACGAACACGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGCGAGTATCGTGCAGGCGATGGTGACTTGCTCCGAGCGGGAACCGATCGTGATGGGCAAACCGAACCCACACATCTGCGAGATCATACGCC]
[+] EMBL CNS09DGL [CTGGGTGACTTTACGGGTAGCAAGCCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGATCCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCGGCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCGGGGCGCCCGAGGTGATAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCCCCCTTTGTGCCCGATCCGGACGTCAGTACCGTGATCGTTGGGTTCGATGAGCACTTTAGCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTGAACAATCCGGACGTTATATTCATTGGCACGAACACGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGCGAGTATCGTGCAGGCGATGGTGACTTGCTCCGAGCGGGAACCGATCGTGATGGGCAAACCGAACCCACACATCTGCGAGATCATACGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8426#0 GCAAGAATTCCGCACGATGGTCGACGACGACGGGTCAGCCAAGCCCGGACGCACTAAACA 60
consensus_8426#1 ----------------CTGGGTGACT-TTACGGGTAG--CAAGCC-GGACGCACTAAACA 40
*** *** ****** ****** **************
consensus_8426#0 ATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGATCCTTCCATCGGCTGTCCAGAAT 120
consensus_8426#1 ATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGATCCTTCCATCGGCTGTCCAGAAT 100
************************************************************
consensus_8426#0 GTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCGGCCGAGATCAAGCAGTGGCT 180
consensus_8426#1 GTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCGGCCGAGATCAAGCAGTGGCT 160
************************************************************
consensus_8426#0 CGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCC 240
consensus_8426#1 CGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCC 220
************************************************************
consensus_8426#0 GCTGCCCGGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTT 300
consensus_8426#1 GCTGCCCGGGGCGCCCGAGGTGATAA-TCGTTTCATCGCGAACGGCAAGAAGCTGTTCTT 279
************************** *********************************
consensus_8426#0 CGTGACGAACAACTCGACGAAAACGCGCCCGGAATTTGTGGAGAAAGCGGTCAAGCTTGG 360
consensus_8426#1 CGTGACGAACAACTCGACG----------------------------------------- 298
*******************
consensus_8426#0 CTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAA 420
consensus_8426#1 ------------------------------------------------------------
consensus_8426#0 GAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCT 480
consensus_8426#1 -------------------------------------------GGCATCACCAAGGAGCT 315
*****************
consensus_8426#0 GGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGC 540
consensus_8426#1 GGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGC 375
************************************************************
consensus_8426#0 GGACACTGTCGCCAGCTTTGTGCCCGATCCGGACGTCAGTGCCGTGATCGTTGGGTTCGA 600
consensus_8426#1 GGACACTGTCGCCCCCTTTGTGCCCGATCCGGACGTCAGTACCGTGATCGTTGGGTTCGA 435
************* ************************* *******************
consensus_8426#0 TGAACACTTTAGCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTGAACAATCCGGACGT 660
consensus_8426#1 TGAGCACTTTAGCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTGAACAATCCGGACGT 495
*** ********************************************************
consensus_8426#0 TATATTCATTGGCACGAACACGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGG 720
consensus_8426#1 TATATTCATTGGCACGAACACGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGG 555
************************************************************
consensus_8426#0 CACGGGCAGTATCGTGCAGGCGATGGTGACCTGCTCCGAGCGGGAACCGATCGTGATGGG 780
consensus_8426#1 CACGGCGAGTATCGTGCAGGCGATGGTGACTTGCTCCGAGCGGGAACCGATCGTGATGGG 615
***** *********************** *****************************
consensus_8426#0 CAAACCGAACCCACACATCTGCGAGATTATCCGCCGGGAGTACGATGTGGATCCGGCCCG 840
consensus_8426#1 CAAACCGAACCCACACATCTGCGAGATCATACGCC------------------------- 650
*************************** ** ****
consensus_8426#0 TACGCTCATGATTGGCGATCGGTGCAATACGGACATTTTGCTGGGGAAGAATTGTGACTT 900
consensus_8426#1 ------------------------------------------------------------
consensus_8426#0 CCAGACGCTGCTGGTCGAAACGGGTATACACAAGGCGGAGGATATAGCAAAGTACGGACA 960
consensus_8426#1 ------------------------------------------------------------
consensus_8426#0 GTCGGAGGATCCGGCGGTGAGGGAACTGGTGCCGGATGTGTATCTACCTAAGCTGGGTGA 1020
consensus_8426#1 ------------------------------------------------------------
consensus_8426#0 CTAACTGCCGTATCTATGATGAGAGGGGGATGGCTGAGAGGTGCTTGTAAATGCTGTAAG 1080
consensus_8426#1 ------------------------------------------------------------
consensus_8426#0 ATTGTTTCAGCATGAGATGGTGCGAAAGTGTAACCGTTGTTTTAAACAATTGGTTTGTGA 1140
consensus_8426#1 ------------------------------------------------------------
consensus_8426#0 GAGTGTTGAAAAAAATACCTCAATAAATGTGCGCTTAAACAAAATAGGTAACAATAA 1197
consensus_8426#1 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||