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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1119 fasta sequence
[CCAAGAATCGGCCCGAGGCNTCGNTTCGATGGCATGTGCTGGCGCACGNAGAATGTAGGATGTATTATTTTTTATCATGAATTCAAATCCACTCACGCAGAAAGGCATTGCACGCTTAAAAAGGTGGTCACTATTGAAGGTTCTGATCAGTAATCAATTAGCCTTCGA-GATG-ATTGCTTTCTACAGTCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCCTTGCGTGGGTAGAGAATGAACTCATCTCGAATCCCTCTACCTGCAATCAATACTACCCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGGTGTTCAATCCCTCCACGAAACGGTGCGTTACATCTGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAAGCAGCGGAACCATCGTTGCGTCTGTCTTCACAACCT-AAATGGGATCGTTCCACAGCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGNAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCAGTGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTTAACGGTTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGGACGAATCACTCCCGCTGGGCGGAACATCCTTACGGAAGTTGGTACGTACAGTTGAC-TGTGGAGCTCAGGAGTCCTGTCCAGCTGTGNCCGAAAAGGTACCAAGTTTTTCCGCCTGGGAAACTTATCCAGGCGGCCTGGTACTTTCCCGGGGGCTGGGTTGGAAAACGGAAACGNAGTTTGCACAAAGTGGCCGGCACCTAAATTAGTGGCCGCCCTTTTGGGCAAAAAAGCGGCACCAATTNCCGTTAGCTCCTTGCGNAGGAAACGGTTACCTTTCAACAGGTTGCGGTCTTTTCACTTGGGGAATATTCCNTNTNGAGNTAGGACAGAAATTTTGGGGCCCCCGNGGATTTATTGAANTCTAACACAGCGGCCAGACAAANGGGGCCACATGCAACGATGANGNTTCCCCGGGGTAAAANCTTCCCAAAAGGGTGNCACCGGGGCAAGTTCGAGAGNGAGNAGTTAG]
[+] EMBL BX468623 [CCAAGAATCGGCCCGAGGCNTCGNTTCGATGGCATGTGCTGGCGCACGNAGAATGTAGGATGTATTATTTTTTATCATGAATTCAAATCCACTCACGCAGAAAGGCATTGCACGCTTAAAAAGGTGGTCACTATTGAAGGTTCTGATCAGTAATCAATTAGCCTTCGA GATG ATTGCTTTCTACAGTCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCCTTGCGTGGGTAGAGAATGAACTCATCTCGAATCCCTCTACCTGCAATCAATACTACCCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGGTGTTCAATCCCTCCACGAAACGGTGCGTTACATCTGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAAGCAGCGGAACCATCGTTGCGTCTGTCTTCACAACCT AAATGGGATCGTTCCACAGCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGNAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCAGTGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTTAACGGTTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGGACGAATCACTCCCGCTGGGCGGAACATCCTTACGGAAGTTGGTACGTACAGTTGAC TGTGGAGCTCAGGA ]
[+] EMBL BX469584 [ cagAATCGGCC ACGAGGTTGTATTGCTTTCTACAGTCTTCTGCTGTTCGCGGCTTG TCTTCTGTTGCTTCAAGCAGTCCGTTCGAGT CTTGCGT GGTAGAGAATGAACTCATCTCGAATCCCTCTACCTGCAATCAATACTA CCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAA GTGTTCAATCCCTCCACCAAACGGTGCGTTACATCTGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAA CAGCGGAACCATCGTTGC TCTGTCTTCACAACCTAAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCA TGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTTAACGGTTACGCCAGAACGCTCGAATCAGTCGCGTGCAACC GAC AATCACTCCCGCT GGCGGAACATCCTTAC GAAGTTGGTACGTACA TTGACTTGTGGAGCTCAGGAGTCCTGTCCAGCTGTGNCCGAAAAGGTACCAAGTTTTTCCGCCTGGGAAACTTATCCAGGCGGCCTGGTACTTTCCCGGGGGCTGGGTTGGAAAACGGAAACGNAGTTTGCACAAAGTGGCCGGCACCTAAATTAGTGGCCGCCCTTTTGGGCAAAAAAGCGGCACCAATTNCCGTTAGCTCCTTGCGNAGGAAACGGTTACCTTTCAACAGGTTGCGGTCTTTTCACTTGGGGAATATTCCNTNTNGAGNTAGGACAGAAATTTTGGGGCCCCCGNGGATTTATTGAANTCTAACACAGCGGCCAGACAAANGGGGCCACATGCAACGATGANGNTTCCCCGGGGTAAAANCTTCCCAAAAGGGTGNCACCGGGGCAAGTTCGAGAGNGAGNAGTTAG]
consensusID : consensus_8445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 736 fasta sequence
[CCGCGGACGCGTGGGTTAGCCTTCGAGATGATTGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG-CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGCGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGCCGCACCTAATTGTGGCGCCTTTGGCAAAAGCGCACATCCTTATCTCTGTGAGAAGTACTTCAAGTGCGTCTTCTGGATCT]
[+] EMBL BM646130 [CCGCGGACGCGTGGGTTAGCCTTCGAGATGATTGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGCGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGC ]
[+] EMBL BM646143 [CCGCGGACGCGTGGGTTAGCCTTCGAGATGATTGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGT ]
[+] EMBL BM593666 [CCGCGGACGCGTGGGTTAGCCTTCGAGATGATTGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGCGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGCCG ]
[+] EMBL BM640106 [ ccgGCCTTCGAGATGATTGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGTGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGCCGCACCTAATTGTGGCGCCTTTGGC AAAGCGCACATCC ]
[+] EMBL BM636724 [ ccggTTGCTTTCTACAGTCTTCTGCTGTTCGCGGCTTGCTCTTCTGTTGCTTCAAGCAGTCCGTCCGAGTCTTG CGTGGTTGAAAATGAACTCACCTCGAATCCCTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGTGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGTTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCATTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGACTGTGGCGCTCAAGAGTCTGTCAGCTGtgc ]
[+] EMBL AL931562 [ gTTGNTTTCTACAGTCTTCTGCTG TCGCGGCTTGCTCTTCTGTTGCTTCAAGCAGTCCGTCCGAGTCTTGCCGTGGTTGAAAATGAACTCACCTCGAATCCCTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGTGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGAT ]
[+] EMBL BM587778 [ ccgGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGCGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGCCGCACCTAATTGTGGCGCCTTTGGCAAAAGCGCACATCCTTA ]
[+] EMBL BM578554 [ ccgG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGCGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGCCGCACCTAATTGTGGCGCCTTTGGCAAAAGCGCACATCCTTATCTCTGTGAGAAGTACTTCAAGTGCGTCTTCTGGATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8445#0 CCAAGAATCGGCCCGAGGCNTCGNTTCGATGGCATGTGCTGGCGCACGNAGAATGTAGGA 60
consensus_8445#1 ------------------------------------------------------------
consensus_8445#0 TGTATTATTTTTTATCATGAATTCAAATCCACTCACGCAGAAAGGCATTGCACGCTTAAA 120
consensus_8445#1 ------------------------------------------------------------
consensus_8445#0 AAGGTGGTCACTATTGAAGGTTCTGATCAGTAATCAATTAGCCTTCGAGATGATTGCTTT 180
consensus_8445#1 ----------------------CCGCGGACGCGTGGGTTAGCCTTCGAGATGATTGCTTT 38
* * * * ***********************
consensus_8445#0 CTACAGTCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTC 240
consensus_8445#1 CTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTC 98
****** *****************************************************
consensus_8445#0 CTTGCGTGGGTAGAGAATGAACTCATCTCGAATCCCTCTACCTGCAATCAATACTACCCG 300
consensus_8445#1 -TTGCGTGG-TAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACC-G 155
******** *************** ********* ** *********** ******* *
consensus_8445#0 CTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGGTGTTCAATCCCT 360
consensus_8445#1 CTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAG-TGTTCAATCCCT 214
*********************************************** ************
consensus_8445#0 CCACGAAACGGTGCGTTACATCTGACCTCTACCCGTGCGATGAGACACAACCGGAGATCA 420
consensus_8445#1 CCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCA 274
**** ***************** *************************************
consensus_8445#0 CAAGCAGCGGAACCATCGTTGCGTCTGTCTTCACAACCTAAATGGGATCGTTCCACAGCC 480
consensus_8445#1 CAA-CAGCGGAACCATCGGTGC-TCTGTCTTCACAACCCAAATGGGATCGTTCCACACCC 332
*** ************** *** *************** ****************** **
consensus_8445#0 GTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGNAAACAGTGCAGTCCTGTGG 540
consensus_8445#1 GTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGG 392
**************************************** *******************
consensus_8445#0 ATATCGGGAGAATTTTTCAGTGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTG 600
consensus_8445#1 ATATCGGGAGAATTTTTCA-TGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTG 451
******************* ****************************************
consensus_8445#0 AATACTTTAACGGTTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGGACGAATCACT 660
consensus_8445#1 AATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGA--CAATCACT 509
******* ***** *********************************** *******
consensus_8445#0 CCCGCTGGGCGGAACATCCTTACGGAAGTTGGTACGTACAGTTGACTGTGGAGCTCAGGA 720
consensus_8445#1 CCCGCTGG-CGGAACATCCTTACG-AAGTTGGTACGTACA-TTGATTGTGGCGCTCAGGA 566
******** *************** *************** **** ***** ********
consensus_8445#0 GTCCTGTCCAGCTGTGNCCGAAAAGGTACCAAGTTTTTCCGCCTGGGAAACTTATCCAGG 780
consensus_8445#1 GTC-TGTC-AGCTGCGTC---GAAGGTACAA---TCTTTCGCT--GGAA--CTATCAGCG 614
*** **** ***** * * ******* * * ** *** **** **** *
consensus_8445#0 CGGCCTGGTACTTTCCCGGGGGCTGGGTTGGAAAACGGAAACGNAGTTTGCACAAAGTGG 840
consensus_8445#1 CTGTCT---------TCCGGGGCTGG---------TGGAAACGAACGAGTTGCAGAGTGC 656
* * ** * ******** ******* * ** ****
consensus_8445#0 CCGGCACCTAAATTAGTGGCCGCCCTTTTGGGCAAAAAAGCGGCACCAATTNCCGTTAGC 900
consensus_8445#1 C--GCACCTAATT--GTGGC-GCCTTT---GGCAAAAGCGCA--------CATCCTTATC 700
* ******** * ***** *** ** ******* ** * *** *
consensus_8445#0 TCCTTGCGNAGGAAA-CGGTTACCTTTCAACAGGTTGCGGTCTTTTCACTTGGGGAATAT 959
consensus_8445#1 TCTGTGAGAAGTACTTCAAGTGCGTCTTCTGGATCT------------------------ 736
** ** * ** * * * * * * *
consensus_8445#0 TCCNTNTNGAGNTAGGACAGAAATTTTGGGGCCCCCGNGGATTTATTGAANTCTAACACA 1019
consensus_8445#1 ------------------------------------------------------------
consensus_8445#0 GCGGCCAGACAAANGGGGCCACATGCAACGATGANGNTTCCCCGGGGTAAAANCTTCCCA 1079
consensus_8445#1 ------------------------------------------------------------
consensus_8445#0 AAAGGGTGNCACCGGGGCAAGTTCGAGAGNGAGNAGTTAG 1119
consensus_8445#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||