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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1275 fasta sequence
[CTTGGTGAATCCGCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCGCTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTGCAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTACACGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGAGCAGGTGCACGGTCGAGACGACCAGGTACGCAATGCCAAACCGCTGCAGTACGCCAAAGATGCGCAGATTGGCCATGCTGGGACCGTTCATCGAGTTCAGACACAGGCCAATTATGAACAGTTTCACCGAGCGAACCGCTATGCTCGACAGGATCGTGCGCTTGGGCACGTTGCGGTTGAGCTGGCCGCGTAACGAGATCGGCACGCACACGCCCATGATGAAGAGAAACCAGGGAAAGACGAGATCGGCCACGTGCAGCCCGTTCCAGGTCGCGTGCTCGATCCACCAGTAGTGGCCGCCGCCACTGTTCANGAAGATCATCAGCATGATCGCGATGCCGCGGAACGTGTCCAAACTTTGCAGCCGCTTCTTGGGCGTAACCTGGCCGGAACCTGGCCCGGTTTGGTGTGGTTTGCGGTCGGTTTCTTCGTTCGAGCTGTGGGCGGTCTCATCACCGGCCGCTGTATGGGAGGCTGCCGGCTGCTGGAAGCCAGACGCGCGGGAACGACGCAGGCCGTACCGTGCCATACGCACGAGACCAAAGACGGCACACGCGAGCAGTGCAATCGTAAGGAATGGAAGGTATATGTTGACCGGTTCCTTGGCCGTTTCCAGCGTACNNCCATTGCCGTCCGGTCGGACGCTCAGATCGTAAACGCCAAATTCACCCAATTGTGCGCTGTTAATTTGGCACAGGACGGTGTCATTGTCGAAGGAGTATTGGCCCACATCTCGGTCGAGCAGCCGCAGCCCGAGGCGGCGCGCCGCATCTATCTTCACCGTGGTGTGCCGTTT]
[-] EMBL BX605286 [CTTGGTGAATCCGCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCGCTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTGCAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTACACGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGAGCAGGTGCACGGTCGAGACGACCAGGTACGCAATGCCAAACCGCTGCAGTACGCCAAAGATGCGCAGATTAGCCATGCTGGGACCATTCATCGAATTCAGACAGAGGCCAATTATGAACAGCTTTACCGAGCGAACCGCTATGCTCGACAGGATCGTGCGCTTGGGCACGTTGCGGTTGAGCTGGCCGCGTAACGAGATCGGCACGCACACGCCCATGATGAAGAGAAACCAGGGAAAGACGAGAT ]
[-] EMBL AGA281121 [ TACCGTCGTACACGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCGGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAA ]
[-] EMBL CNS098IG [ GCTGGTAGAGATGCGCTATTCCGAGCAGAGCACGATCGATGTACCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAG ]
[-] EMBL BX619507 [ gtanACGCATGGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAGACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAGCGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGAGCAGGTGCACGGTCGAGACGACCAGGTACGCAATGCCAAACCGCTGCAGTACGCCAAAGATGCGCAGATTGGCCATGCTGGGACCGTTCATCGAGTTCAGACACAGGCCAATTATGAACAGTTTCACCGAGCGAACCGCTATGCTCGACAGGATCGTGCGCTTGGGCACGTTGCGGTTGAGCTGGCCGCGTAACGAGATCGGCACGCACACGCCCATGATGAAGAGAAACCAGGGAAAGACGAGATCGGCCACGTGCAGCCCGTTCCAGGTCGCGTGCTCGATCCACCAGTAGTGGCCGCCGCCACTGTTCAN ]
[-] EMBL AGA281390 [ TACCTGCTGCTCGTGGCAGAGCAGGTGCACGGTCGAGACGACCAGGTACGCAATGCCAAACCGCTGCAGTACGCCAAAGATGCGCAGATTGGCCATGCTGGGACCGTTCATCGAGTTCAGACACAGGCCAATTATGAACAGTTTCACCGAGCGAACCGCTATGCTCGACAGGATCGTGCGCTTGGGSNCGTTGCGGTTGAGCTGGCCGCGTAACGAGATCGGCACGCACACGCCCATGATGAAGAGAAACCAGGGAAAGACGAGATCGGCCACGTGCAGCCCGTTCCAGGTCGCGTGCTCGATCCACCAGTAGTGGCCGCCGCCACTGTTCACGAAGATCATCAGCATGATCGCGATGCCGCGGAACGTGTCCAAACTTTGCAGCCGCTTCTTGGGCGTAACCTGGCCGGAACCTGGCCCGGTTTGGTGTGGTTTGCGGTCGGTTTCTTCGTTCGAGCTGTGGGCGGTCTCATCACCGGCCGCTGTATGGGAGGCTGCCGGCTGCTGGAAGCCAGACGCGCGGGAACGACGCAGGCCGTACCGTGCCATACGCACGAGACCAAAGACGGCACACGCGAGCAGTGCAATCGTAAGGAATGGAAGGTATATGTTGACCGGTTCCTTGGCCGTTTCCAGCGTACNNCCATTGCCGTCCGGTCGGACGCTCAGATCGTAAACGCCAAATTCACCCAATTGTGCGCTGTTAATTTGGCACAGGACGGTGTCATTGTCGAAGGAGTATTGGCCCACATCTCGGTCGAGCAGCCGCAGCCCGAGGCGGCGCGCCGCATCTATCTTCACCGTGGTGTGCCGTTT]
consensusID : consensus_8447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 989 fasta sequence
[CTGAGGGTCGAGCACATGTGGCCTTTTTTTTTTTTTTTGGAA-TGGAATGTGTGTGTATTGCGACACGTTTATTCACACGAAAACACTTTCAAAATAGAGAGAGAACAACAAACTGCACGATCGCACGACGGTTTGGGGCTTAAAGATTGTAAAATATCTTTCGCTTGTACAGGTAGAGCGCTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTC-A-CACGAA-G-TGTGTG-TTCATCGTGCCGATGCGCCAGTGCCACGGTAGCATCTTGTGAAAGACGGTGTGGCCCACGTACAGTACGATCGCATTCATCCCCGCATACACAAACGGTCGACCGTGCCAGGCGCGCTTCACATCGATCGCGTAGTAGCAGAGCAGCAGCAGCGCATGGGCGAGTGAGGCCGTCGCCAGCACGTACGACAGGGACCACAGGTTCTTGTTGATCGGGATCCACCCGTCGTTCTTGGTGAATCCGCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCGCTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTGCAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTAC-CGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGACCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTCCCG]
[-] EMBL CNS09MF8 [CTGAGGGTCGAGCACATGTGGCCTTTTTTTTTTTTTTTGGAACTGGAATGTGTGTGTATTGCGACACGTTTATTCACACGAAAACACTTTCAAAATAGAGAGAGAACAACAAACTGCACGATCGCACGACGGTTTGGGGCTTAAAGATTGTAAAATATCTTTCGCTTGTACAGGTAGAGCGCTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTC AGCACGAA G TGTGTG TTCATCGTGCCGATGCGCCAGTGCCACGGTAGCATCTTGTGAAAGACGGTGTGGCCCACGTACAGTACGATCGCATTCATCCCCGCATACACAAACGGTCGACCGTGCCAGGCGCGCTTCACATCGATCGCGTAGTAGCAGAGCAGCAGCAGCGCATGGGCGAGTGAGGCCGTCGCCAGCACGTACGACAGGGACCACAGGTTCTTGTTGATCGGGATCCACCCGTCGTTCTTGGTGAATCCGCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCGCTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTGCAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTAC CGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTG ]
[+] EMBL CNS098IH [ TGGAA TGGAATGTGTGTTTATTGCGACACGTTTATTCACACGAAAACACTTTCAAAATAGAGAGAGAACAACAAACTGCACGATCGCACGACGGTTTGGGGCTTAAAGATTGTAAAATATCTTTCGCTTGTACAGGTAGAGCGCTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTC A CACGAAGG TGT TT TTCATCGTGCCGATGCGCCAGTcc ]
[+] EMBL CNS09MF9 [ ATGTGTGTGTATTGCGACACGTTTATTCACACGAAAACACTTTCAAAATAGAGAGAGAACAACAAACTGCACGATCGCACGACGGTTTGGGGCTTAAAGATTGTAAAATATCTTTCGCTTGTACAGGTAGAGCGCTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTC A CACGAA GTTGT TGCTTCATCGTGCCGATGCGCCAGTCCCACGGTAGCATCTTGTGAAAGACGGTGTGGCCCACGTACAGTACGATCGCATTCATCCCCGCATACACAAACGGTCGACCGTGCCAGGCGCGCTTCACATCGATCGCGTAGTAGCAGAGCAGCAGCAGCGCATGGGCGAGTAAGGCCGTCGCCAGCACGTACGACAGGGACCACAGGTTCTTGTTGATCGGGATCCACCCGTCGTTCTTGGTGAATCCGCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAA CGTACCATCCGCTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTGCAGTTTCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTACACGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCAGTTCAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTTCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGACCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTCCCG]
[+] EMBL AGA282749 [ ACGATCGCACGACGG TTGGGGCTTAAAGGTTGTAAAATATCTTTCGCTTGTACAGGTAGAGCGCTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTCAA CACGAA G TGTGTG TTCATTGTGCCGATGCGCCAGTGCCACGGTAGCATCTTGTGGAACACGGTGTGGCCCACGTACAGTACGATCGCATTCATCCCCGCATACACGAATGGTCGACCGTGCCAGGCGCGCTTCACATCGATCGCGTAGTAGCAGAGCAGCAGGAGCGCATGGGCGAGCGAAGCCGTCGCCAGCACGTACGACAGGGACCACAGGTTCTTGTTGATCGGGATCCACCCGTCGTTCTTGGTGAACCCGCACAGTGC ]
[+] EMBL AGA283005 [ tca A CACGAA K KKKGTK TYCATTGTGCCGATGCGCCAGTGCCACGGTAGCATCTTGTGGAACACGGTGTGGCCCACGTACAGTACGATCGCATTCATCCCCGCATACACGAATGGTCGACCGTGCCAGGCGCGCTTCACATCGATCGCGTAGTAGCAGAGCAGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8447#0 ------------------------------------------------------------
consensus_8447#1 CTGAGGGTCGAGCACATGTGGCCTTTTTTTTTTTTTTTGGAATGGAATGTGTGTGTATTG 60
consensus_8447#0 ------------------------------------------------------------
consensus_8447#1 CGACACGTTTATTCACACGAAAACACTTTCAAAATAGAGAGAGAACAACAAACTGCACGA 120
consensus_8447#0 ------------------------------------------------------------
consensus_8447#1 TCGCACGACGGTTTGGGGCTTAAAGATTGTAAAATATCTTTCGCTTGTACAGGTAGAGCG 180
consensus_8447#0 ------------------------------------------------------------
consensus_8447#1 CTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTCACACGAAGTGTGTGTT 240
consensus_8447#0 ------------------------------------------------------------
consensus_8447#1 CATCGTGCCGATGCGCCAGTGCCACGGTAGCATCTTGTGAAAGACGGTGTGGCCCACGTA 300
consensus_8447#0 ------------------------------------------------------------
consensus_8447#1 CAGTACGATCGCATTCATCCCCGCATACACAAACGGTCGACCGTGCCAGGCGCGCTTCAC 360
consensus_8447#0 ------------------------------------------------------------
consensus_8447#1 ATCGATCGCGTAGTAGCAGAGCAGCAGCAGCGCATGGGCGAGTGAGGCCGTCGCCAGCAC 420
consensus_8447#0 ------------------------------------------------CTTGGTGAATCC 12
consensus_8447#1 GTACGACAGGGACCACAGGTTCTTGTTGATCGGGATCCACCCGTCGTTCTTGGTGAATCC 480
************
consensus_8447#0 GCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCG 72
consensus_8447#1 GCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCG 540
************************************************************
consensus_8447#0 CTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTG 132
consensus_8447#1 CTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTG 600
************************************************************
consensus_8447#0 CAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTACAC 192
consensus_8447#1 CAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTAC-C 659
********************************************************** *
consensus_8447#0 GTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTA 252
consensus_8447#1 GTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTA 719
************************************************************
consensus_8447#0 CCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCC 312
consensus_8447#1 CCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCC 779
************************************************************
consensus_8447#0 GAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCAC 372
consensus_8447#1 GAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCAC 839
************************************************************
consensus_8447#0 CGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACG 432
consensus_8447#1 CGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACG 899
************************************************************
consensus_8447#0 GAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGAGCAGGTGCACGGT 492
consensus_8447#1 GAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGACCAGTTGGCCAAC 959
*********************************************** *** ** *
consensus_8447#0 CGAGACGACCAGGTACGCAATGCCAAACCGCTGCAGTACGCCAAAGATGCGCAGATTGGC 552
consensus_8447#1 --AGTTCTCGAGGAATTCCGCAGCTTTTCCCG---------------------------- 989
** * *** * * * * *
consensus_8447#0 CATGCTGGGACCGTTCATCGAGTTCAGACACAGGCCAATTATGAACAGTTTCACCGAGCG 612
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 AACCGCTATGCTCGACAGGATCGTGCGCTTGGGCACGTTGCGGTTGAGCTGGCCGCGTAA 672
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 CGAGATCGGCACGCACACGCCCATGATGAAGAGAAACCAGGGAAAGACGAGATCGGCCAC 732
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 GTGCAGCCCGTTCCAGGTCGCGTGCTCGATCCACCAGTAGTGGCCGCCGCCACTGTTCAN 792
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 GAAGATCATCAGCATGATCGCGATGCCGCGGAACGTGTCCAAACTTTGCAGCCGCTTCTT 852
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 GGGCGTAACCTGGCCGGAACCTGGCCCGGTTTGGTGTGGTTTGCGGTCGGTTTCTTCGTT 912
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 CGAGCTGTGGGCGGTCTCATCACCGGCCGCTGTATGGGAGGCTGCCGGCTGCTGGAAGCC 972
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 AGACGCGCGGGAACGACGCAGGCCGTACCGTGCCATACGCACGAGACCAAAGACGGCACA 1032
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 CGCGAGCAGTGCAATCGTAAGGAATGGAAGGTATATGTTGACCGGTTCCTTGGCCGTTTC 1092
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 CAGCGTACNNCCATTGCCGTCCGGTCGGACGCTCAGATCGTAAACGCCAAATTCACCCAA 1152
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 TTGTGCGCTGTTAATTTGGCACAGGACGGTGTCATTGTCGAAGGAGTATTGGCCCACATC 1212
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 TCGGTCGAGCAGCCGCAGCCCGAGGCGGCGCGCCGCATCTATCTTCACCGTGGTGTGCCG 1272
consensus_8447#1 ------------------------------------------------------------
consensus_8447#0 TTT 1275
consensus_8447#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||