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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1047 fasta sequence
[CCGCGGACGCGTGGGCTCGATCCATTTGTGGCTGACGTTTCCCTACTTGTAATTTGTGTTCCGGCGAACGAAAACAAAACCCAAAGGCGTCCGAGTGCGAGAGGCTAGGACTGGCTGCAATCGGAATCAAGTGCTG---CTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTC-GGTG-AAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTACACCAAGGCGTCCCTGATCGCGTCGATCATCTTCGTGCTGGACAAGAAGACGGATCTGATCTCGGCCCCGCACGCCCTCGTCTACTTCGGCATCGTCATCTTCCTGGTGTACTTCAAGCTGTCGTCGATCCTGCTCGGCATCCACGATCCGTTCGTGCCGTTCGAGAACCTGAGCTGCGCGCTGCTGTTCGGCGGCATCTGGGACAGCCTGGCCAAGATTCTGGGGCTGCGGCCAGGCCAAGGAGGAGCCGAAGGATGCGAAAAAGTCCAACTAAAGCCGGACACACTG]
[+] EMBL BM592674 [CCGCGGACGCGTGGGCTCGATCCATTTGTGGCTGACGTTTCCCTACTTGTAATTTGTGTTCCGGCGAACGAAAACAAAACCCAAAGGCGTCCGAGTGCGAGAGGCTAGGACTGGCTGCAATCGGAATCAAGTGCTGGGCCTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTCGGGTGAAAGAAGGATCTGGGCGC GGCGCACACACCTTCT CCGGAAGCACCCGCTCGCCTGCTGG ]
[+] EMBL BM645573 [ ccgCGAAAACAAAACCCAAAGGCGTCCGAGTGCGAGAGGCTAGGACTGGCTGCAATCGGAATCAAGTGCTG CTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTC GGTG AAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTAC ]
[+] EMBL BM624182 [ ccgAAACAAAACGCAAAGGCGTCCGAGTGCGAGAGGCTAGGACTGGCTGCAATCGGAATCAAGTGCTG CTCTTGAATCGCGCGCGGGGGGGTGC TGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTC GGTG AAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGA ]
[+] EMBL BX615419 [ tGAATCAAGTGCTG CTCTTGAATCGCGCTCGTGTGTGTGCTGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTC GGTG AAGGAGGATCTGGGCGCTGGCGCACACACCTTCTCCCGTAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGTACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTACACCAAGGCGTCCCTGATCGCGTCGATCATCTTCGTGCTGGACAAGAAGACGGATCTGATCTCGGCCCCGCACGCCCTC ]
[+] EMBL BX608496 [ TGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTC GGTG AAGGAGGATCTGGGCGCTGGCGCACACACCTTCTCCCGTAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGTACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTACACCAAGGCGTCCCTGATCGCGTCGATCATCTTCGTGCTGGACAAGAAGACGGATCTGATCTCGGCCCCGCACGCCCTCGTCTACTTCGGCATCGTCATCTTC ]
[+] EMBL BM624354 [ ccgGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTACACCAAGGCGTCCCTGATCGCGTCGATCATCTTCGTGCTGGACAAGAAGACGGATCTGATCTCGGCCCCGCACGCCCTCGTCTACTTCGGCATCGTCATCTTCCTGGTGTACTTCAAGCTGTCGTCGATCCTGCTCGGCATCCACGATCCGTTCGTGCCGTTCGAGAACCTGAGCTGCGCGCTGCTGTTCGGCGGCATCTGGGACAGCCTGGCCAAGATTCTGGGGCTGCGGCCAGGCCAAGGAGGAGCCGAAGGATGCGAAAAAGTCCAACTAAAGCCGGACACACTG]
consensusID : consensus_8499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 719 fasta sequence
[CCGCTCCGCTCGAGCCGTACAGTCGTGCCGTGTTCGTTCCGGTCCGTGTGTGCACACGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGTGCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGC------TGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTCGGTGAAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGG-AAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGATGGAGTTCCTGCAGCCA]
[+] EMBL BM628716 [CCGCTTAGCTCGAGCCGTACAGTCGTGCCGTGTTCGTTCCGGTCCGTGTGTGCACACGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGTGCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGC TGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTCGGTGAAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGGCAGCGCGATGAAGGAAAATCTACCGCGCAA ]
[+] EMBL BM585692 [ CCGCTCGAGCCGTACAGTCGTGCCGTGTTCGTTCCGGTCCGTGTGTGCACACGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGTGCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGC TGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTCGGTGAAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGG AAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACC ]
[+] EMBL BM626722 [ CCGC CCACGCGTCCGGTCGTGCCGTGTTCGTTCCGGTCCGTGTGTGCACACGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGTGCGGAATC ]
[+] EMBL BM640773 [ ccgGTCGTGCCGTGTTCGTTCCGGTCCGTGTGTGTACACGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGTGCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACATTCTGCTGTGCGCACTGTCGGTGAAGGAGGATCTGGGCGCGGGCGCACACCCCCTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGG AAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGATGGAGTTCCTGCAGCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8499#0 CCGCGGACGCGTGGGCTCGATCCATTTGTGGCTGACGTTTCCCTACTTGTAATTTGTGTT 60
consensus_8499#1 ----------------CCGCTCCGCTCGAGCCGTACAGT------CGTGCCGTGTTCGTT 38
** *** * * * * ** * * ** * * ***
consensus_8499#0 CCGGCGAACGAAAACAAAACCCAAAGGCGTCCGAGTGCGAGAGGCTAGGACTGGCTGCAA 120
consensus_8499#1 CCGGTCCGTGTGTGCACA---CGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGT 95
**** * ** * * ** ** * * * * * *
consensus_8499#0 TCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTGTGTGTGAAGT 180
consensus_8499#1 GCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTG------AAGT 149
************************************************* ****
consensus_8499#0 AAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAG 240
consensus_8499#1 AAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAG 209
************************************************************
consensus_8499#0 GTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTG 300
consensus_8499#1 GTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTG 269
************************************************************
consensus_8499#0 TCGGTGAAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCC 360
consensus_8499#1 TCGGTGAAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCC 329
************************************************************
consensus_8499#0 TGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTC 420
consensus_8499#1 TGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTC 389
************************************************************
consensus_8499#0 GGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGC 480
consensus_8499#1 GGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGC 449
************************************************************
consensus_8499#0 TGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCG 540
consensus_8499#1 TGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCG 509
************************************************************
consensus_8499#0 ATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGG 600
consensus_8499#1 ATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGG 569
************************************************************
consensus_8499#0 GTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACG 660
consensus_8499#1 GTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACG 629
************************************************************
consensus_8499#0 CTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGG 720
consensus_8499#1 CTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGG 689
************************************************************
consensus_8499#0 ACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTACACCAAGGCGTCCCTGATCGCG 780
consensus_8499#1 ACCCCGACGGCGATGGAGTTCCTGCAGCCA------------------------------ 719
******************************
consensus_8499#0 TCGATCATCTTCGTGCTGGACAAGAAGACGGATCTGATCTCGGCCCCGCACGCCCTCGTC 840
consensus_8499#1 ------------------------------------------------------------
consensus_8499#0 TACTTCGGCATCGTCATCTTCCTGGTGTACTTCAAGCTGTCGTCGATCCTGCTCGGCATC 900
consensus_8499#1 ------------------------------------------------------------
consensus_8499#0 CACGATCCGTTCGTGCCGTTCGAGAACCTGAGCTGCGCGCTGCTGTTCGGCGGCATCTGG 960
consensus_8499#1 ------------------------------------------------------------
consensus_8499#0 GACAGCCTGGCCAAGATTCTGGGGCTGCGGCCAGGCCAAGGAGGAGCCGAAGGATGCGAA 1020
consensus_8499#1 ------------------------------------------------------------
consensus_8499#0 AAAGTCCAACTAAAGCCGGACACACTG 1047
consensus_8499#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||