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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 718 fasta sequence
[TGCCGAGGCTCACAGGAAAACACAACCGCAAAC---ATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTACAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGGCTGCGAGCCTGCGGAACCGGTGGCGTACTGGCAAACGCACCGCTCGTCCAATCCAAATCGTATTTCGAGGTGAAGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCTGGCCACGCAGCAAACGGACCTGAACCAATCGGTCGGCGGCAAGGACCGGGGAATCGTGGTGTCTCAACTCCAACCATCTCGTACTGCACGGGGGCGACGTCATCTACCGGCTGGACGCGAGCAAAGGGAGTGCGGTACCAAACGGGGG]
[+] EMBL AL933420 [TGCCGAGGCTCACAGGAAAACACAAACACAAACATTATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACCGCCGCGCGC TGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAATTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAG CAACCCGGTGCAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGACTGCGAGCCTGCGGAACCGGTGGCGTACTGGCAAACGCACCGCTCGTCCAATCCAAATCGTATTTCGAG ]
[+] EMBL BM582639 [ CCGCAAAC ATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTACAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGGCTGCGAGCCTGCGGAACCGGTGGCGTACTGGCAAACGCACCGCTCGTCCAATCCAAATCGTATTTCGAGGTGAAGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCTGGCCACGCAGCAAACGGACCTGAACCAATCGGTCGGCGGCAAGGACCGGGAAATCGTGGTGTCTCAACTCCAACCATCTCGTACTGCACGGGGGCGACGTCATCTACCGGCTGGACGCGAGCAAAGGGAGTGCGGTACCAAACGGGGG]
[+] EMBL BM614170 [ CCGCAAAC ATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTACAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATC AAAACGGGCTGCGAGCCTGCGGA ]
[+] EMBL BM638286 [ ggGCAAAC ATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTG ]
[+] EMBL BM656378 [ ccgccacCAAAC ATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTACAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGGCTGCGAGCCTGCGGAACCGGTGGCGTACTGGCAAACGCACCGCTCGTCCAATCCAAATCGTATTTCGAGGTGAAGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCTGGCCACGCAGCAAACGGACCTGAACCAATCGGTCGGCGGCAAGGACCGGGGAATCGTGGTGTCTCAACTCCAACCATCTCGTACTGCAC ]
[+] EMBL BX628213 [ GCGCATATTTCTTATCGCATTAAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACCGCCGCGCGC TGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAATTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTGCAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGACTGCGAGCCTGCGGAACCGGTGGCGTACTGGCAAACGCACCGCTCGTCCAATCCAAATCGTATTTCGAGGTGAAGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCTGGCCACGCAGCAAACGGACCTGAACCAATCGGTCGGCGGCAAGGACC GGGAATCGTGGTGTCTCAACTCCAACCATCTCTTACTGCACGGGGGCGACGTCATCTACCGGCT ]
[+] EMBL BM636726 [ GCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACG ]
[+] EMBL BM625949 [ CTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGG ]
consensusID : consensus_8507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[CTCAGCAGATCGCAGCAGGTTAATCGGTGCGCATATTATCTTATCGCATTAAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACCGCCGCGCGCTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAATTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCAACCCGGTGCAACTGGACTCGTCACCATATGGGCCATGACAGTGGTCATCATCAAAAACGGACTGAGAGACCTGCGGAACCGGTGGCGTACTGGCAAAAGCACCGCTCGTCCAATCCAAATCGTATTTCGACGGTGAAGCTGCACGCAGTCCGGCACTGGTCGATCAGGGCTGGACACGACAGCAAACGGACCTGAACCAAATCGGNACGGCGGAAACGGACCGGGAATACAGTCGGTGTNCTCAACTCCAAACATACTCGTACATCGCACGGGAGCGCCGACGTCCATCTANCCGGGGCTGGGACCGCGAAGCCAACGGGGGACGTG]
[+] EMBL AL696823 [CTCAGCAGATCGCAGCAGGTTAATCGGTGCGCATATTATCTTATCGCATTAAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACCGCCGCGCGCTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAATTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCAACCCGGTGCAACTGGACTCGTCACCATATGGGCCATGACAGTGGTCATCATCAAAAACGGACTGAGAGACCTGCGGAACCGGTGGCGTACTGGCAAAAGCACCGCTCGTCCAATCCAAATCGTATTTCGACGGTGAAGCTGCACGCAGTCCGGCACTGGTCGATCAGGGCTGGACACGACAGCAAACGGACCTGAACCAAATCGGNACGGCGGAAACGGACCGGGAATACAGTCGGTGTNCTCAACTCCAAACATACTCGTACATCGCACGGGAGCGCCGACGTCCATCTANCCGGGGCTGGGACCGCGAAGCCAACGGGGGACGTG]
consensusID : consensus_8507#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[AGATCCCCCNAGNTTCAGTGCGCATATTTCTTATCGCATTAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACGCCGCGCGCTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCTTCCTATCGTACGTGGCTGTGAAATGTCTTGCTGTTTGAAGAATTGGCTCAACGGTGTGCTGGCGGCTCAGTCCGTGCACATCACGAAAACAGCAACCGGTGCAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGACTGCGAGCCTGCGGAACCGGTGGCGTACTGGNCAAACGCACCGCTCGTCCCAATCCAAATCGTATTTCGAGGTGAAAGGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCT]
[+] EMBL AL692684 [AGATCCCCCNAGNTTCAGTGCGCATATTTCTTATCGCATTAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACGCCGCGCGCTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCTTCCTATCGTACGTGGCTGTGAAATGTCTTGCTGTTTGAAGAATTGGCTCAACGGTGTGCTGGCGGCTCAGTCCGTGCACATCACGAAAACAGCAACCGGTGCAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGACTGCGAGCCTGCGGAACCGGTGGCGTACTGGNCAAACGCACCGCTCGTCCCAATCCAAATCGTATTTCGAGGTGAAAGGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8507#0 TGCCGAGGCTCACAGGAAAACACAACCGCAAACATTAATGCAAAT-CGGTGCGCATATT- 58
consensus_8507#2 -------------------------------AGATCCCCCNAGNTTCAGTGCGCATATT- 28
consensus_8507#1 --------------------CTCAGCAGATCGCAGCAG-GTTAAT-CGGTGCGCATATTA 38
* * * ***********
consensus_8507#0 TCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAG 118
consensus_8507#2 TCTTATCGCATTAAA-CGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAG 87
consensus_8507#1 TCTTATCGCATTAAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAG 98
*************** ** ****************************** **********
consensus_8507#0 TGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACAC 178
consensus_8507#2 TGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTAC-GCCGCGC 146
consensus_8507#1 TGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACCGCCGCGC 158
************** ** ******* ********** ************* * *** * *
consensus_8507#0 GCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAG 238
consensus_8507#2 GC-TGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGG-TCAGTGCTCAGGGGAACGGAAG 204
consensus_8507#1 GC-TGTGTGCTGCTGCCAGCTGTTCGGCCTCGGA------------------------AG 193
** ******************************* **
consensus_8507#0 AAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATC 298
consensus_8507#2 AAAACGGGCAATGTAGAACACACAG-TGGAGCTTTCTCTCAACTAAAAAGAAACACAATC 263
consensus_8507#1 AAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATC 253
************************* **********************************
consensus_8507#0 CTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTC 358
consensus_8507#2 CTTTCTATC-TTCCTATCGTACGTGGCTGTGAAATGTCTTGCTGTTTGAAGAATTGGCTC 322
consensus_8507#1 CTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAATTGCCTC 313
********* *************************** *************** ** ***
consensus_8507#0 AACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTACAACTG 418
consensus_8507#2 AACGGTGTGCTGGCGGCTCAGTCCGTGCACATCACGAAAACAGCAA--CCGGTGCAACTG 380
consensus_8507#1 AACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCAA-CCCGGTGCAACTG 372
************ ******************************* * ***** ******
consensus_8507#0 GACTCGTCAC-ATATGGGCCATGA-AGTGGTCATCATCAAAAACGGGCTGCGAG-CCTGC 475
consensus_8507#2 GACTCGTCAC-ATATGGGCCATGA-AGTGGTCATCATCAAAAACGGACTGCGAG-CCTGC 437
consensus_8507#1 GACTCGTCACCATATGGGCCATGACAGTGGTCATCATCAAAAACGGACTGAGAGACCTGC 432
********** ************* ********************* *** *** *****
consensus_8507#0 GGAACCGGTGGCGTACTGGC-AAACGCACCGCTCGTCC-AATCCAAATCGTATTTCGA-G 532
consensus_8507#2 GGAACCGGTGGCGTACTGGNCAAACGCACCGCTCGTCCCAATCCAAATCGTATTTCGA-G 496
consensus_8507#1 GGAACCGGTGGCGTACTGGC-AAAAGCACCGCTCGTCC-AATCCAAATCGTATTTCGACG 490
******************* *** ************* ******************* *
consensus_8507#0 GTGAA--GCTGCA-GCAGTCCGGCCACTGGTCGATC-GGGCTGGCCACG-CAGCAAACGG 587
consensus_8507#2 GTGAAAGGCTGCA-GCAGTCCGGCCACTGGTCGATC-GGGCT------------------ 536
consensus_8507#1 GTGAA--GCTGCACGCAGTCCGGC-ACTGGTCGATCAGGGCTGGACACGACAGCAAACGG 547
***** ****** ********** *********** *****
consensus_8507#0 ACCTGAACCAA-TCGGT-CGGCGGCAA-GGACCGGGGAATCG--TGGTGTC-TCAACTCC 641
consensus_8507#2 ------------------------------------------------------------
consensus_8507#1 ACCTGAACCAAATCGGNACGGCGGAAACGGACCGGGAATACAGTCGGTGTNCTCAACTCC 607
consensus_8507#0 AACCAT-CTCGTAC--TGCACGGGGGCGACGTCATCTACCGGCTGGACGCGAGCAAAGGG 698
consensus_8507#2 ------------------------------------------------------------
consensus_8507#1 AAACATACTCGTACATCGCACGGGAGCGCCGACGTCCATCTANCCGGGGCTGGGACCGCG 667
consensus_8507#0 AGTGCGGTACCAAACGGGGG 718
consensus_8507#2 --------------------
consensus_8507#1 AAGCCAACGGGGGACGTG-- 685
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||