cluster # 8517

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Anopheles gambiae
cluster # 8517 cluster # 8517 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8517#0 length = 1372 sequences # 7
consensus_8517#1 length = 934 sequences # 1

consensus_8517#2 length = 653 sequences # 1
consensus_8517#3 length = 378 sequences # 1

consensusID : consensus_8517#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1372
fasta sequence

                              [GGGTTTTGATGCGTG-TCGCTAGTGAAAACCTCGTGCCGGCAA--TGCAAAATTCGTTTTACGTATTATTTTACCAGTTTCAAAATGAAAGAGAAAACAAACATTCGAGATTTATTTAGCTCCGCTGCCGAACGAAACACATTTCTAAAGATTTGTGCTCCGATGGTAAGATACAGCAAACTAGAGTTTCGCCATTTGGTACGTTCGTACGGGACCGATCTAGCTTTTACCAGCATGATAATGGCTGATTCCTTCTGCAAGAGCGAAAAAGCACGCCTGAATGAGTTCACCACGAACGAAGAAGACACACCGTTAATAGCACAATTTGCTGCCAACAACACAATCGACTTCCTGTCCGCCAGCGAGATGGTCTACCCCTACGTCGATGGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGCGGAAGGGTACGGAAGTGCGCTGTTAAAAACTCCCGAACTTATAGCCGATATGCTCGGAACGGTGCGTCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTGCTATCGAGCACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATTCCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGCGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGATATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGC-CGACACCAACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACTCACCTACCGCTGGACGGTGTCATTGATGACGTTGGGTCCGGAAGACAGTATCCGGAAAAGATAAGCTGTACCTACAGCGAACGAAACTACCGAGAAAGGACAAGGGTGGTAAACGGTGGCAGAAAGGACGATAGAACTGCCGCTAGTGCCGGTAGCTTATATGACCCCGAAGCGTCGGAAGGTAACTTTTTCCAAAGCAAGCGGGTAGAACTGGACGCAACGAAACTGGCCCTGGATGGGGATGGCGAGTCGACCGTGGATGGAGTCGATTTTATGGACGGAAGCAGCATTTTGTTCGACGAGTGAGTAAGTACAATAAACGAAAACGATTTTTTGTTGCTCAAAAAAAAAAAAAAAA]

[+] EMBL CNS09FNM             [GGGTTTTGATGCGTGCTCGCTAGTGAAAACCTCGTGCCGGCAAACTGCAAAATTCGTTTTACGTATTATTTTACCAGTTTCAAAATGAAAGAGAAAACAAACATTCGAGATTTATTTAGCTCCGCTGCCGAACGAAACACATTTCTAAAGATTTGTGCTCCGATGGTAAGATACAGCAAACTAGAGTTTCGCCATTTGGTACGTTCGTACGGGACCGATCTAGCTTTTACCAGCATGATAATGGCTGATTCCTTCTGCAAGAGCGAAAAAGCACGCCTGAATGAGTTCACCACGAACGAAGAAGACACACCGCTAATAGCACAATTTGCTGCCAACAACACAATCGACTTCCTGTCCGCCAGCGAGATGGTCTACCCCTACGTCGATGGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGCGGAAGGGTACGGAAGTGCGCTGTTAAAAACTCCCGAACTTATAGCCGATATGCTCGGAACGGTGCGTCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTGCTATCGAGCACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATTCCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGCGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGATATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACCTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGC CGACACCAACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAA                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CNS099F6             [      TGTTGCGTG TCGCTAGTGAAAACCTCGTGCCGGCAA  TGCAAAATTCGTTTTACGTATTATTTTACCAGTTTCAAAATGAAAGAGAAAACAAACATTCGAGATTTATTTAGCTCCGCTGCCGAACGAAACACATTTCTAAAGATTTGTGCTCCGATGGTAAGATACAGCAAACTAGAGTTTCGCCATTTGGTACGTTCGTACGGGACCGATCTAGCTTTTACCAGCATGATAATGGCTGATTCCTTCTGCAAGAGCGAAAAAGCACGCCTGAATGAGTTCACCACGAACGAAGAAGACACACCGTTAATAGCACAATTTGCTGCCAACAACACAATCGACTTCCTGTCCGCCAGCGAGATGGTCTACCCCTACGTCGATGGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGCGGAAGGGTACGGAAGTGCGCTGTTAAAAACTCCCGAACTTATAGCCGATATGCTCGGAACGGTGCGTCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTGCTATCGAGCACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATTCCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGCGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGATATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGC CGACACCAACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CNS09JR2             [                                                                                                                                                                                                              GTACGGGACCGATCTAGCTTTTACCAGCATGATAATGGCTGATTCCTTCTGCAAGAGCGAAAAAGCACGCCTGAATGAGTTCACCACGAACGAAGAAGACACACCGTTAATAGCACAATTTGCTGCCAACAACACAATCGACTTCCTGTCCGCCAGCGAGATGGTCTACCCCTACGTCGATGGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGCGGAAGGGTACGGAAGTGCGCTGTTAAAAACTCCCGAACTTATAGCCGATATGCTCGGAACGGTGCGTCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTGCTATCGAGCACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATTCCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGCGCTGCAGGAAATTAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGATATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGC CGACACCAACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACTCACCTACCGCTGGACGGTGTCATTGATGACGTTGGGTCCGGAAGACAGTATCCGGAAAAAAAAAGCTGTACCTACAGCGAACGAAACTACCGAGAAAGGACAAGGGTGGTAAACGGTGGCAGAAAGGACGATAGCACTGCCGCTAGTGCCGGTAGCTTATATGACCCCGAAGCGTCGGAAGGTAACTTTT                                                                                                                                                                        ]
[-] EMBL CNS09JR3             [                                                                                                                                                                                                                                                                                                                                                                                                                                   TTGGGCTATGGCGGAAGGGTACGGAAGTGCGCTGTTAAAAACTCCCGAACTTTTAGCCGATATGCTCGGAACGGTGCGTCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTGCTATCGAGCACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATTCCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGCGCTGCAGGAAATTAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGATATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGC CGACACCAACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACTCACCTACCGCTGGACGGTGTCATTGATGACGTTGGGTCCGGAAGACAGTATCCGGAAAAGATAAGCTGTACCTACAGCGAACGAAACTACCGAGAAAGGACAAGGGTGGTAAACGGTGGCAGAAAGGACGATAGCACTGCCGCTAGTGCCGGTAGCTTATATGACCCCGAAGCGTCGGAAGGTAACTTTTTCCAAAGCAAGCGGGTAGAACTGGACGCAACGACACTGGCCCTGGATGGGGATGGCGAGTCGACCGTGGATGGAGTCGATTTTATGGACGGAAGCAGCATTTTGTTCGACGAGTGAGTAAGTACAATAAACGAAAA                                ]
[-] EMBL CNS09FNN             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGTTAAAAACTCCCGAACTTATAGCCGATATGCTCGGAACGGTGCGTCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTGCTATCGAGCACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATTCCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGCGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGATATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACCTTCCAATCCGGCACTGTTCGCGGGTAACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGC CGACACCAACATTACGTACCAGTGCATGCATCATCACTTTTTTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAAACTCACCTACCGCTGGACGGTGTCATTGATGACGTTGGGTCCGGAAGACAGTATCCGGAAAAGATAAGCTGTACCTACAGCGAACGAAACTACCGAGAAAGGACAAGGGTGGTAAACGGTGGCAGAAAGGACGATAGAACTGCCGCTAGTGCCGGTAGCTTATATGACCCCGAAGCGTCGGAAGGTAACTTTTTCCAAAGCAAGCGGGTAGAACTGGACGCAACGAAACTGGCCCTGGATGGGGATGGCGAGTCGACCGTGGATGGAGTCGATTTTATGGACGGAAGCAGCATTTTGTTCGACGAGTGAGTAAGTACAATAAACGAAAACGATTTTTTGTTGCTCAAAAAAAAAAAAAAAA]
[-] EMBL CNS08WQV             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGTGCACGGTCGAACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGCGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGATATATTCACGCTGGACGATGCGGAACAAATGAAATTGCAAACAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGC CGACACCAACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACTCACCTACCGCTGGACGGTGTCATTGATGACGTTGGGTCCGGAAGACAGTATCCGGAAAAGATAAGCTGTACCTACAGCGAACGAAACTACCGAGAAAGGACAAGGGTGGTAAACGGTGGCAGAAAGGACGATAGAACTGCCGCTAGTGCCGGTAGCTTATATGACCCCGAAGCGTCGGAAGGTAACTTTTTCCAAAGCAAGCGGGTAGAACTGGACGCAACGAAACTGGCCCTGGATGGGGATGGCGAGTCGACCGTGGATGGAGTCGATTTTATGGACGGAAGCAGCATTTTGTTCGACGAGTGAGTAAGTACAATAAACGAAAACGATTTTTT                       ]
[-] EMBL CNS099F7             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TAAACATCTGCCAGCAGGCGCGACACCAACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACTCACCTACCGCTGGACGGTGTCATTGATGACGTTGGGTCCGGAAGACAGTATCCGGAAAAGATAAGCTGTACCTACAGCGAACGAAACTACCGAGAAAGGAAAAGGGTGGTAAACGGTGGCAGAAAGGACGATAGAACTGCCGCTAGTGCCGGTAGCTTATATGACCCCGAAGCGTCGGAAGGTAACTTTTTCCAAAGCAAGCGGGTAGAACTGGACGCAACGAAACTGGCCCTGGATGGGGATGGCGAGTCGACCGTGGATGGAGTCGATTTTATGGACGGAAGCAGCATTTTGTTCGACGAGT  GTAAGTACAATAAACGAAAACGATTTTTTGTTG   AAACAAAAAAAA    ]




>consensus_8517#0
GGGTTTTGATGCGTGTCGCTAGTGAAAACCTCGTGCCGGCAATGCAAAATTCGTTTTACG
TATTATTTTACCAGTTTCAAAATGAAAGAGAAAACAAACATTCGAGATTTATTTAGCTCC
GCTGCCGAACGAAACACATTTCTAAAGATTTGTGCTCCGATGGTAAGATACAGCAAACTA
GAGTTTCGCCATTTGGTACGTTCGTACGGGACCGATCTAGCTTTTACCAGCATGATAATG
GCTGATTCCTTCTGCAAGAGCGAAAAAGCACGCCTGAATGAGTTCACCACGAACGAAGAA
GACACACCGTTAATAGCACAATTTGCTGCCAACAACACAATCGACTTCCTGTCCGCCAGC
GAGATGGTCTACCCCTACGTCGATGGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGG
GCTATGGCGGAAGGGTACGGAAGTGCGCTGTTAAAAACTCCCGAACTTATAGCCGATATG
CTCGGAACGGTGCGTCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTG
CTATCGAGCACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGC
ATAACATTCCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCAT
AAGGATGCGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGAT
ATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATG
ACAGCCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTG
GAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGCCGACACCAACATTACGTACCAG
TGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTAC
GAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACTCACCTA
CCGCTGGACGGTGTCATTGATGACGTTGGGTCCGGAAGACAGTATCCGGAAAAGATAAGC
TGTACCTACAGCGAACGAAACTACCGAGAAAGGACAAGGGTGGTAAACGGTGGCAGAAAG
GACGATAGAACTGCCGCTAGTGCCGGTAGCTTATATGACCCCGAAGCGTCGGAAGGTAAC
TTTTTCCAAAGCAAGCGGGTAGAACTGGACGCAACGAAACTGGCCCTGGATGGGGATGGC
GAGTCGACCGTGGATGGAGTCGATTTTATGGACGGAAGCAGCATTTTGTTCGACGAGTGA
GTAAGTACAATAAACGAAAACGATTTTTTGTTGCTCAAAAAAAAAAAAAAAA

consensusID : consensus_8517#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 934
fasta sequence

                              [GTCGTATCATTGTGGCAAATTGAACTAATCTTTGACTCATTTCTATCCGCAGACTAGAGTTTCGCCATTTGGTACGTTCGTACGGGACCGATCTAGCTTTTACCAGCATGATAATGGCTGATTCCTTCTGCAAGAGCGAAAAAGCACGCCTGAATGAGTTCACCACGAACGAAGAAGACACACCGTTAATAGCACAATTTGCTGCCAACAACACAATCGACTTCCTGTCCGCCAGCGAGATGGTCTACCCCTACGTCGATGGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGCGGAAGGGTACGGAAGTGCGCTGTTAAAAACTCCCGAACTTATAGCCGATATGCTCGGAACGGTGCGTCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTGCTATCGAGCACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATTCCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGCGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGTTGATATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGCCGACACCAACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACTCACCTACCGCTGGACGGTGTCATTTGATGACGTTGGGGTCCGGA]

[+] EMBL CNS08WQU             [GTCGTATCATTGTGGCAAATTGAACTAATCTTTGACTCATTTCTATCCGCAGACTAGAGTTTCGCCATTTGGTACGTTCGTACGGGACCGATCTAGCTTTTACCAGCATGATAATGGCTGATTCCTTCTGCAAGAGCGAAAAAGCACGCCTGAATGAGTTCACCACGAACGAAGAAGACACACCGTTAATAGCACAATTTGCTGCCAACAACACAATCGACTTCCTGTCCGCCAGCGAGATGGTCTACCCCTACGTCGATGGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGCGGAAGGGTACGGAAGTGCGCTGTTAAAAACTCCCGAACTTATAGCCGATATGCTCGGAACGGTGCGTCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTGCTATCGAGCACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATTCCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGCGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGTTGATATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGCCGACACCAACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACTCACCTACCGCTGGACGGTGTCATTTGATGACGTTGGGGTCCGGA]




>consensus_8517#1
GTCGTATCATTGTGGCAAATTGAACTAATCTTTGACTCATTTCTATCCGCAGACTAGAGT
TTCGCCATTTGGTACGTTCGTACGGGACCGATCTAGCTTTTACCAGCATGATAATGGCTG
ATTCCTTCTGCAAGAGCGAAAAAGCACGCCTGAATGAGTTCACCACGAACGAAGAAGACA
CACCGTTAATAGCACAATTTGCTGCCAACAACACAATCGACTTCCTGTCCGCCAGCGAGA
TGGTCTACCCCTACGTCGATGGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTA
TGGCGGAAGGGTACGGAAGTGCGCTGTTAAAAACTCCCGAACTTATAGCCGATATGCTCG
GAACGGTGCGTCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTGCTAT
CGAGCACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAA
CATTCCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGG
ATGCGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGTTGATATAT
TCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAG
CCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGT
GTGTCAAGCGATGGTTAAACATCTGCCAGCAGGCCGACACCAACATTACGTACCAGTGCA
TGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGC
TGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACTCACCTACCGC
TGGACGGTGTCATTTGATGACGTTGGGGTCCGGA

consensusID : consensus_8517#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 653
fasta sequence

                              [CCGCCCACGCGTCCGGAACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATTCCTTACCGTGCACGGTCGCACTGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGCGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGATATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGCCGACACCGACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACGCACCTACCGCTGGACGGTGTCGTTGATGACGTTGGGGTCCGGAAGGCAGTATCCGGAAAAGATAAGCTGTACCTATAGCGAACGAAACTACCGAGAAAGGACAACGGGTGGTAAACGGTGGCAGAAAGGACGATAGCACTGCCGCTAGTGCCGGGTAGCTTATATGACCCCGAAAGCGTCGGAAGG]

[+] EMBL BM576622             [CCGCCCACGCGTCCGGAACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATTCCTTACCGTGCACGGTCGCACTGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGCGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGATATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGCCGACACCGACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACGCACCTACCGCTGGACGGTGTCGTTGATGACGTTGGGGTCCGGAAGGCAGTATCCGGAAAAGATAAGCTGTACCTATAGCGAACGAAACTACCGAGAAAGGACAACGGGTGGTAAACGGTGGCAGAAAGGACGATAGCACTGCCGCTAGTGCCGGGTAGCTTATATGACCCCGAAAGCGTCGGAAGG]




>consensus_8517#2
CCGCCCACGCGTCCGGAACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACAT
TCCTTACCGTGCACGGTCGCACTGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATG
CGCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGATATATTCA
CGCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCC
GTGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTG
TCAAGCGATGGTTAAACATCTGCCAGCAGGCCGACACCGACATTACGTACCAGTGCATGC
ATCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGA
ACAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACGCACCTACCGCTGG
ACGGTGTCGTTGATGACGTTGGGGTCCGGAAGGCAGTATCCGGAAAAGATAAGCTGTACC
TATAGCGAACGAAACTACCGAGAAAGGACAACGGGTGGTAAACGGTGGCAGAAAGGACGA
TAGCACTGCCGCTAGTGCCGGGTAGCTTATATGACCCCGAAAGCGTCGGAAGG

consensusID : consensus_8517#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [AGCTCCGCTGCCGAACGAAACACATTTCTAAAGATTTGTGCTCCGATGACTAGAGTTTCGCCATTTGGTACGTTCGTACGGGACCGATCTAGCTTTTACCAGCATGATAATGGCTGATTCCTTCTGCAAGAGCGAAAAAGCACGCCTGAATGAGTTCACCACGAACGAAGAAGACACACCGTTAATAGCACAATTTGCTGCCAACAACACAATCGACTTCCTGTCCGCCAGCGAGATGGTCTACCCCTACGTCGATGGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGCGGAAGGGTACGGAAGTGCGCTGNTGAAAACTCCTGAACTTATAGCTGATATGCTCGGAACNGTGCGTCGAAACATGCC]

[+] EMBL BX626643             [AGCTCCGCTGCCGAACGAAACACATTTCTAAAGATTTGTGCTCCGATGACTAGAGTTTCGCCATTTGGTACGTTCGTACGGGACCGATCTAGCTTTTACCAGCATGATAATGGCTGATTCCTTCTGCAAGAGCGAAAAAGCACGCCTGAATGAGTTCACCACGAACGAAGAAGACACACCGTTAATAGCACAATTTGCTGCCAACAACACAATCGACTTCCTGTCCGCCAGCGAGATGGTCTACCCCTACGTCGATGGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGCGGAAGGGTACGGAAGTGCGCTGNTGAAAACTCCTGAACTTATAGCTGATATGCTCGGAACNGTGCGTCGAAACATGCC]




>consensus_8517#3
AGCTCCGCTGCCGAACGAAACACATTTCTAAAGATTTGTGCTCCGATGACTAGAGTTTCG
CCATTTGGTACGTTCGTACGGGACCGATCTAGCTTTTACCAGCATGATAATGGCTGATTC
CTTCTGCAAGAGCGAAAAAGCACGCCTGAATGAGTTCACCACGAACGAAGAAGACACACC
GTTAATAGCACAATTTGCTGCCAACAACACAATCGACTTCCTGTCCGCCAGCGAGATGGT
CTACCCCTACGTCGATGGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGC
GGAAGGGTACGGAAGTGCGCTGNTGAAAACTCCTGAACTTATAGCTGATATGCTCGGAAC
NGTGCGTCGAAACATGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8517#1      ------------------------------------------------------------
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      GGGTTTTGATGCGTGTCGCTAGTGAAAACCTCGTGCCGGCAATGCAAAATTCGTTTTACG 60
consensus_8517#2      ------------------------------------------------------------
                                                                                  

consensus_8517#1      ----------------------------------------------------GTCGTATC 8
consensus_8517#3      ------------------------------------------------------AGCTCC 6
consensus_8517#0      TATTATTTTACCAGTTTCAAAATGAAAGAGAAAACAAACATTCGAGATTTATTTAGCTCC 120
consensus_8517#2      -----------------------CCGCCCACGCGTCCGGAACGATCGACATGTGCCGTCA 37
                                                                                  

consensus_8517#1      ATTGTGG-CAAATTGAACT-AATCTTTGACTCATTTCTATC-CGCAG------------- 52
consensus_8517#3      GCTGC---CGAACGAAACA-CATTTCTAAAGATTTGTGCTC-CGATG------------- 48
consensus_8517#0      GCTGC---CGAACGAAACA-CATTTCTAAAGATTTGTGCTC-CGATGGTAAGATACAGCA 175
consensus_8517#2      GCTGGAGGCCACCGGCATAACATTCCTTACCGTGCACGGTCGCACTGCACCGGAAA---T 94
                        **    * *     *    **   * *          ** *   *             

consensus_8517#1      -ACTAGAGTTTCG--CCATTTGG-TACGTTCGTACGGGACCGATCTAGCTTTTACCAGCA 108
consensus_8517#3      -ACTAGAGTTTCG--CCATTTGG-TACGTTCGTACGGGACCGATCTAGCTTTTACCAGCA 104
consensus_8517#0      AACTAGAGTTTCG--CCATTTGG-TACGTTCGTACGGGACCGATCTAGCTTTTACCAGCA 232
consensus_8517#2      GACGAAGGTTCCGGTCCATAAGGATGCGCT-GCAGGAAATCAAACAATCCATCGGCATTC 153
                       ** *  *** **  ****  ** * ** * * * *  * * * * * *  *   **   

consensus_8517#1      TGATAATGGCTGAT----------TCCTTCTGCAAGA-GCGAAA-AAGCACGCCTG-AAT 155
consensus_8517#3      TGATAATGGCTGAT----------TCCTTCTGCAAGA-GCGAAA-AAGCACGCCTG-AAT 151
consensus_8517#0      TGATAATGGCTGAT----------TCCTTCTGCAAGA-GCGAAA-AAGCACGCCTG-AAT 279
consensus_8517#2      CAATGGTTGCCAATGGTGATATATTCACGCTGGACGATGCGGAACAAATGTACTTGCAAA 213
                        **  * **  **          **   *** * ** *** ** **     * ** ** 

consensus_8517#1      GAGTTCACCACGAACGAAGAA--------GACACACCGTTAA---TAGCACAATTTGCTG 204
consensus_8517#3      GAGTTCACCACGAACGAAGAA--------GACACACCGTTAA---TAGCACAATTTGCTG 200
consensus_8517#0      GAGTTCACCACGAACGAAGAA--------GACACACCGTTAA---TAGCACAATTTGCTG 328
consensus_8517#2      CAAAGTGCGACGGCGTAATGACAGCCCGTGGCATACTTTCCAATCCGGCACTGTTCGCGG 273
                       *     * ***    **  *        * ** **  *  *     ****  ** ** *

consensus_8517#1      CCAACAACACAATCGACTTCCTGTCCGCCA-GCGA-----GATGGTCTACCCCTACGTCG 258
consensus_8517#3      CCAACAACACAATCGACTTCCTGTCCGCCA-GCGA-----GATGGTCTACCCCTACGTCG 254
consensus_8517#0      CCAACAACACAATCGACTTCCTGTCCGCCA-GCGA-----GATGGTCTACCCCTACGTCG 382
consensus_8517#2      GTCACAGCAGCACCCCGGTGGAGTGTGTCAAGCGATGGTTAAACATCTGCCAGCAGGCCG 333
                         *** **  * *    *   **  * ** ****      *   *** **   * * **

consensus_8517#1      AT---GGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGCGGAAGGG---- 311
consensus_8517#3      AT---GGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGCGGAAGGG---- 307
consensus_8517#0      AT---GGCGTTGATCTCAACTGCGGTTGCCCGCAGCGTTGGGCTATGGCGGAAGGG---- 435
consensus_8517#2      ACACCGACATTACGTACCAGTGCATGCATCATCACTTTTCTTTCATGACCGAATCGCTCC 393
                      *    * * **     * * ***      *  **   **     *** * ***  *    

consensus_8517#1      -TACGGAAGTGCGCTGTTAAAAACTCCCGAACTTATAGCCGATATGCTCGGAACGGTGCG 370
consensus_8517#3      -TACGGAAGTGCGCTGNTGAAAACTCCTGAACTTATAGCTGATATGCTCGGAACNGTGCG 366
consensus_8517#0      -TACGGAAGTGCGCTGTTAAAAACTCCCGAACTTATAGCCGATATGCTCGGAACGGTGCG 494
consensus_8517#2      TTACGAAACGTTTGCGCTACGAGCTGAACAATTTGTCGAAGGAAAAGCAGAAAGTGTACG 453
                       **** **       * *   * **    ** ** * *  *  *     * **  ** **

consensus_8517#1      ------TCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTGCTATCGAG 424
consensus_8517#3      ------TCGAAACATGCC------------------------------------------ 378
consensus_8517#0      ------TCGAAACATGCCCAGCACGTTCAGTGTTTCGGTAAAGGTGCGCTTGCTATCGAG 548
consensus_8517#2      AGTTCATTCAGACGCACCTACCGCTGGACGGTGTCGTTGATGACGTTGGGGTCCGGAAGG 513
                            *  * **   **                                          

consensus_8517#1      CACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATT 484
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      CACCGACCATAAACGTACGATCGACATGTGCCGTCAGCTGGAGGCCACCGGCATAACATT 608
consensus_8517#2      CAGTATCCGGAAAAGATAAGCTGTACCTATAGCGAACGAAACTACCGAGAAAGGACAACG 573
                                                                                  

consensus_8517#1      CCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGC 544
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      CCTTACCGTGCACGGTCGCACAGCACCGGAAATGACGAAGGTTCCGGTCCATAAGGATGC 668
consensus_8517#2      GGTGGTAAACGGTGGCAGAAAGGACGATAGCACTGCCGCTAGTGCCGGGTAGCTTATATG 633
                                                                                  

consensus_8517#1      GCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGTTGATATATTCAC 604
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      GCTGCAGGAAATCAAACAATCCATCGGCATTCCAATGGTTGCCAATGGTGATATATTCAC 728
consensus_8517#2      ACCCCGAAAGCGTCGGAAGG---------------------------------------- 653
                                                                                  

consensus_8517#1      GCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCG 664
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      GCTGGACGATGCGGAACAAATGTACTTGCAAACAAAGTGCGACGGCGTAATGACAGCCCG 788
consensus_8517#2      ------------------------------------------------------------
                                                                                  

consensus_8517#1      TGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGT 724
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      TGGCATACTTTCCAATCCGGCACTGTTCGCGGGTCACAGCAGCACCCCGGTGGAGTGTGT 848
consensus_8517#2      ------------------------------------------------------------
                                                                                  

consensus_8517#1      CAAGCGATGGTTAAACATCTGCCAGCAGGCCGACACCAACATTACGTACCAGTGCATGCA 784
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      CAAGCGATGGTTAAACATCTGCCAGCAGGCCGACACCAACATTACGTACCAGTGCATGCA 908
consensus_8517#2      ------------------------------------------------------------
                                                                                  

consensus_8517#1      TCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAA 844
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      TCATCACTTTTCTTTCATGACCGAATCGCTCCTTACGAAACGTTTGCGCTACGAGCTGAA 968
consensus_8517#2      ------------------------------------------------------------
                                                                                  

consensus_8517#1      CAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACTCACCTACCGCTGGA 904
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      CAATTTGTCGAAGGAAAAGCAGAAAGTGTACGAGTTCATTCAGACTCACCTACCGCTGGA 1028
consensus_8517#2      ------------------------------------------------------------
                                                                                  

consensus_8517#1      CGGTGTCATTTGATGACGTTGGGGTCCGGA------------------------------ 934
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      CGGTGTCATTGATGACGTTGGGTCCGGAAGACAGTATCCGGAAAAGATAAGCTGTACCTA 1088
consensus_8517#2      ------------------------------------------------------------
                                                                                  

consensus_8517#1      ------------------------------------------------------------
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      CAGCGAACGAAACTACCGAGAAAGGACAAGGGTGGTAAACGGTGGCAGAAAGGACGATAG 1148
consensus_8517#2      ------------------------------------------------------------
                                                                                  

consensus_8517#1      ------------------------------------------------------------
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      AACTGCCGCTAGTGCCGGTAGCTTATATGACCCCGAAGCGTCGGAAGGTAACTTTTTCCA 1208
consensus_8517#2      ------------------------------------------------------------
                                                                                  

consensus_8517#1      ------------------------------------------------------------
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      AAGCAAGCGGGTAGAACTGGACGCAACGAAACTGGCCCTGGATGGGGATGGCGAGTCGAC 1268
consensus_8517#2      ------------------------------------------------------------
                                                                                  

consensus_8517#1      ------------------------------------------------------------
consensus_8517#3      ------------------------------------------------------------
consensus_8517#0      CGTGGATGGAGTCGATTTTATGGACGGAAGCAGCATTTTGTTCGACGAGTGAGTAAGTAC 1328
consensus_8517#2      ------------------------------------------------------------
                                                                                  

consensus_8517#1      --------------------------------------------
consensus_8517#3      --------------------------------------------
consensus_8517#0      AATAAACGAAAACGATTTTTTGTTGCTCAAAAAAAAAAAAAAAA 1372
consensus_8517#2      --------------------------------------------