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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1244 fasta sequence
[CCGCGGACGCGTGGGCGGGATTGGGAGCGGCACATCACTTTGCGCGGGTTAAGATGTATTCTCATGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTTCGTGAGTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGG-TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAACTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC--GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGGGATGGGTTCGGGAACGTCGATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACCAGTTGCTGATCCAAAAAAAAAACTTTTGCCGGTGACTATCGGTACGCCCGGTACAAGGAGTTTTGAAATTGGCAGTGAGGCGGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGGCACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACGACGATGGATCGCGATAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAACTGGCACCATTCGAATCTGAACGGTCGGTTCACTGAACGCCGGTGGATGTGAAGTCGATCTCNTGGTATCATTTCAANGAGNCTCCGCCACCCACGGGCACTGGCTTACACCTAGGATGACTGACTACCACGCGACAGCGGTTCAAGCGCTCTGAANCGCCAACNTGGTNNGCACACTAACTANTGTTCACCATAACATANCCCTANAAGCCACCGGTTATAAC]
[+] EMBL BM581714 [CCGCGGACGCGTGGGCGGGATTGGGAGCGGCACATCACTTTGCGCGGGTTAAGATGTATTCTCATGTGCTGTCGGTTGTGTTGTGTTGGTGTTTGTCGTTGCTGTTCGTGAGTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGG TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTGGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAGCTGTTCAGTCTTGCGCCAAGGCAGGGCCTTGCACCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCGAAGATGTCGGGCAAGTATTTGTTG ]
[+] EMBL BM635117 [ ccGGCGGGATTGGGAGCGGCACATCACTTTGCGCGGGTTAAGATGTATTCTCATGTGCTGTCGGTTGTGTTGTGTTGGTGTTTGTCGTTGCTGTTCGTGAGTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGG TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTGGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAGCTGTTCAGTCTTGCGCCAAGGCAGGGCCTTGCACCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCGAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCCGCGGGGGGGTTGGTTGGTGATACAGCA ]
[+] EMBL BM606137 [ ccgGGAAGCGGCACATCACTTTGCGCGGATTAAGATGTATTCTCACGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTGCGTGAGTGTGGCTGGAAGCAATGATACAGCTACCGTTCCTGCGGAGAAGTCTACGGATCCGAGCTCCACCGGGTACGGG TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAACTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAG CGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAG ]
[+] EMBL BX621698 [ GCGGCACATCACTTTGCGCGGGTTAAGATGTATTCTCATGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTTCGTGATTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGG TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCTCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAATTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCG ]
[+] EMBL AGA283033 [ CACATCACTTTGCGCGGGTTAAGATGTATTCTCATGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTTCGTGATTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGG TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGA ]
[+] EMBL BX624501 [ TCTCATGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTTCGTGATTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGGTTTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCTCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAATTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGG ]
[+] EMBL BM579295 [ ccgGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAGCTGTTCAGTCTTGCGCCAAGGCAGGGCCTTGCACCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCGAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGCGATGGGTTC ]
[-] EMBL AGA281420 [ tmGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCTCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAATTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGGGATGGGTTCGGGAACGTCGATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACCAGTTGCTGATCCAAAAAAAAAA ]
[+] EMBL BX617294 [ CCACGACCAAATGCGGAGTGAATTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGGGATGGGTTCGGGAACGTCGATCAGTAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGA ]
[+] EMBL AL693080 [ ccgagGTTNCCGGCGTACTGCGAGCAGACCAAG TCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGGGATGGGTTCGGGAACGTCGATCAGGAG TTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACCAGTTGCTGATCGAAGTGGAAGACTTTTGCCGGTGACTATCGGTACGCCCGGTACAAGGAGTTTTGAAATTGGCAGTGAGGCGGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGGCACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACGACGATGGATCGCGATAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAACTGGCACCATTCGAATCTGAACGGTCGGTTCACTGAACGCCGGTGGATGTGAAGTCGATCTCNTGGTATCATTTCAANGAGNCTCCGCCACCCACGGGCACTGGCTTACACCTAGGATGACTGACTACCACGCGACAGCGGTTCAAGCGCTCTGAANCGCCAACNTGGTNNGCACACTAACTANTGTTCACCATAACATANCCCTANAAGCCACCGGTTATAAC]
consensusID : consensus_8525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[CCGCGCAACTGGACGGAGTACCGCGATGGGTTCGGGAACGTCGATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACCAGTTGCTGATCGAGGTGGAAGACTTTGCCGGTGACTATCGGTACGCCCGGTACAAGGAGTTTGAAATTGGCAGTGAGGCAGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGGCACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACAACGATGGATCGCGATAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAACTGCCACCATTCGAATCTGAACGGTCGGTTCATGAACGCTGTGGATGTGAAGTCGATCTCGTGGTATCATTTCAAGAGCTCGCACCAGGGCATGGCTTACACTAGGATGATGATAAAGGAGGTTTAGATTGAAGCAAGTGGTGGAATAATATGTAAGATAAATAAATTAAGC]
[+] EMBL BM591140 [CCGCGCAACTGGACGGAGTACCGCGATGGGTTCGGGAACGTCGATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACCAGTTGCTGATCGAGGTGGAAGACTTTGCCGGTGACTATCGGTACGCCCGGTACAAGGAGTTTGAAATTGGCAGTGAGGCAGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGGCACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACAACGATGGATCGCGATAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAACTGCCACCATTCGAATCTGAACGGTCGGTTCATGAACGCTGTGGATGTGAAGTCGATCTCGTGGTATCATTTCAAGAGCTCGCACCAGGGCATGGCTTACACTAGGATGATGATAAAGGAGGTTTAGATTGAAGCAAGTGGTGGAATAATATGTAAGATAAATAAATTAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8525#0 CCGCGGACGCGTGGGCGGGATTGGGAGCGGCACATCACTTTGCGCGGGTTAAGATGTATT 60
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 CTCATGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTTCGTGAGTGTGGCTG 120
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 GAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGT 180
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 ACGGGTTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGG 240
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 ACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAG 300
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 TGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAA 360
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 CCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACG 420
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 ACCAAATGCGGAGTGAACTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCAC 480
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 GCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATG 540
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 AGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCC 600
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 CGGCGTACTGCGAGCAGACCAAGTTCGGCGGTGGTTGGTTGGTGATACAGCATCGGTTTA 660
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 AGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGGGATGGGTTCGGGAACGTCG 720
consensus_8525#1 -----------------CCGCGCAACTGGACGGAGTACCGCGATGGGTTCGGGAACGTCG 43
******************** *******************
consensus_8525#0 ATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACC 780
consensus_8525#1 ATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACC 103
************************************************************
consensus_8525#0 AGTTGCTGATCCAAAAAAAAAACTTTTGCCGGTGACTATCGGTACGCCCGGTACAAGGAG 840
consensus_8525#1 AGTTGCTGATCGAGGTGGAAGACTTT-GCCGGTGACTATCGGTACGCCCGGTACAAGGAG 162
*********** * ** ***** *********************************
consensus_8525#0 TTTTGAAATTGGCAGTGAGGCGGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGG 900
consensus_8525#1 TTT-GAAATTGGCAGTGAGGCAGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGG 221
*** ***************** **************************************
consensus_8525#0 CACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACGACGATGGATCGCGA 960
consensus_8525#1 CACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACAACGATGGATCGCGA 281
********************************************* **************
consensus_8525#0 TAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAA 1020
consensus_8525#1 TAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAA 341
************************************************************
consensus_8525#0 CTGGCACCATTCGAATCTGAACGGTCGGTTCACTGAACGCCGGTGGATGTGAAGTCGATC 1080
consensus_8525#1 CTGCCACCATTCGAATCTGAACGGTCGGTTCA-TGAACGCTG-TGGATGTGAAGTCGATC 399
*** **************************** ******* * *****************
consensus_8525#0 TCNTGGTATCATTTCAANGAGNCTCCGCCACCCACGGGCACTGGCTTACACCTAGGATGA 1140
consensus_8525#1 TCGTGGTATCATTTCAAG-AGCTCGCACCA-----GGGCA-TGGCTTACAC-TAGGATGA 451
** ************** ** * *** ***** ********** ********
consensus_8525#0 CTGACTACCACGCGACAGCGGTTCAAGCGCTCTGAANCGCCAACNTGGTNNGCACACTAA 1200
consensus_8525#1 -TGATAA--AGGAGGTTTAGATTGAAGC------AAGTGGTGGAATAATATGTAAGATAA 502
*** * * * * * ** **** ** * * * * * ***
consensus_8525#0 CTANTGTTCACCATAACATANCCCTANAAGCCACCGGTTATAAC 1244
consensus_8525#1 ATAA-ATTAAGC-------------------------------- 513
** ** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||