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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1023 fasta sequence
[TCCATTTTGTAATTCCCATTTTTTTAATTGTTCAGGTAATGCAATGCGCCCTTTCCTAATCTCGCTTCTGGTGCGGTGCGGACTTGTGTTAGTATGGAGATGTTTGTGTGTGTATGTGTCTGTGTGTTTTAAACGTATTTAAACTTATGAACCAGCCTTTTGATGTTACCCTCATTTTTGCTTAGAGCATTATTTCATGTACCTTCTATAATCGCGCACACCCGCGCACTTCAGTTCCTACCGATTTTTTCTCTTTTCATTCGATTTCGCTCCTTATCACACACACACACACAGCATGTGCTCTCTCTCTCGATCGATCTT-CCAAAACATAGCCTT-CCCCTTCCCTTTTCCTCCTCCTCCTCCTCCTTTTAATCGAGAATGCACTCTTGTGGCGCTACACACTATGAATTCCTTCCGAAGATACGTGTCCGATTCGTCACACCACCCCCTCTCCTACTACTGTCGGACGGTCACAACAACAACAACACTGTCGGTGGCACCACCACCCCGAGGACGGGGAC-GGGTGTGGTTGATGTTTAGTCCTC-TTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC-GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC]
[+] EMBL CNS08QDL [TCCATTTTGTAATTCCCATTTTTTTAATTGTTCAGGTAATGCAATGCGCCCTTTCCTAATCTCGCTTCTGGTGCGGTGCGGACTTGTGTTAGTATGGAGATGTTTGTGTGTGTATGTGTCTGTGTGTTTTAAACGTATTTAAACTTATGAACCAGCCTTTTGATGTTACCCTCATTTTTGCTTAGAGCATTATTTCATGTACCTTCTATAATCGCGCACACCCGCGCACTTCAGTTCCTACCGATTTTTTCTCTTTTCATTCGATTTCGCTCCTTATCACACACACACACACAGCATGTGCTCTCTCTCTCGATCGATCTT CCAAAACATAGCCTT CCCCTTCCCTTTTCCTCCTCCTCCTCCTCCTTTTAATCGAGAATGCACTCTTGTGGCGCTACACACTATGAATTCCTTCCGAAGATACGTGTCCGATTCGTCACACCACCCCCTCTCCTACTACTGTCGGACGGTCACAACAACAACAACACTGTCGGTGGCACCACCACCCCGAGGACGGGGAC GGGTGTGGTTGATGTTTAGTCCTC TTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGTt ]
[-] EMBL BX606348 [ CGATCGATCTTCCCAAAACATAGCCTTCCCCCTTTCCTTTTCCTCCT T CTCCTCCTTTTAATCGAGAATGCACTCTTGTGGCGCTACACACTATGAATTCCTTCCGAAGATACGTGTCTGATTCGTCACACCACCCCCTCTCCTACTACTGTCGGACGGTCACAACAACAACAACACTGTCGGTGGCACCACCACCCCGAGGACGGGGAC GGGTGTGGTTGATGTTTAGTCCTC TTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC]
[-] EMBL BX602549 [ CAACAACAACACTGTCGGTGGCACCACCACCCCGAGGACGGGGAC GGGTGTGGTTGATGTTTAGTCCTC TTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGTGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC]
[-] EMBL BM620158 [ CCACCACCCCGAGGACGGGGACGGGGTGTGGTTGATGTTTAGTCCTCTTTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGAGGC]
[-] EMBL BX610948 [ CACCCCGAGGACGGGGAC GGGTGTGGTTGATGTTTAGTCCTC TTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTAACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCC ]
[-] EMBL BM649045 [ GAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTCGGGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGTGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC]
[-] EMBL BM578106 [ TGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGAGGC]
[-] EMBL BM612889 [ CCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGTGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC]
[-] EMBL BX602566 [ CGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGG GCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC]
[-] EMBL BM619393 [ TAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGTGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC]
consensusID : consensus_8556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[GTGTTTTTTCCTTCTTCTTTATATCTTTATATATTCTAGCTGCTGGTGGTGGTGAATGCTGTTGCTCTTCTTGCTGCTTGGTGCAACAGGAGGAGTTGTAGTAGTAGTAGTAGTAGTTGCTGTTGTTGTTGTGGTGATGGTGGTATAAGAAAGTGCTGTAATATGTGTGGCCGGCGCCTACTGCTGATGCTGCTGCTGCTGCTGCTACGGCTGATTCTGGTACCGTCGTTTACTGCTTTTTTACTGCTGTGGCTGCTGCTGCTGCTGCTGCTCCCCGTCGCCGACGATAGGCTGGCCTCGGAGATGCAGGACGAAGACGAGCCCGACGACGACGTGGACAGCGCTTCGTCGTCCGAGTTGGAGCCCGATACGAGCGCCTCACCCGCTCCCTCCTTCAGCGCACTGCCGGCATTGCGCGTAAACTCGCGGCGCTTTTCCCGCGCCGTCAGCCCGCCCCCACTGCCGGACGCCTTGGACGAACTGCCGACGCCCCCCATCAGTGCAGTCGTGTCGCAGGTAATGAGGCCACGGTTTTCCTTGCTCTTCTTGAAGTGGGGCGTCTTGTCGCGGTGAAAGATTTCGACCCGGCGGATCGGCCATGT]
[+] EMBL BM582255 [GTGTTTTTTCCTTCTTCTTTATATCTTTATATATTCTAGCTGCTGGTGGTGGTGAATGCTGTTGCTCTTCTTGCTGCTTGGTGCAACAGGAGGAGTTGTAGTAGTAGTAGTAGTAGTTGCTGTTGTTGTTGTGGTGATGGTGGTATAAGAAAGTGCTGTAATATGTGTGGCCGGCGCCTACTGCTGATGCTGCTGCTGCTGCTGCTACGGCTGATTCTGGTACCGTCGTTTACTGCTTTTTTACTGCTGTGGCTGCTGCTGCTGCTGCTGCTCCCCGTCGCCGACGATAGGCTGGCCTCGGAGATGCAGGACGAAGACGAGCCCGACGACGACGTGGACAGCGCTTCGTCGTCCGAGTTGGAGCCCGATACGAGCGCCTCACCCGCTCCCTCCTTCAGCGCACTGCCGGCATTGCGCGTAAACTCGCGGCGCTTTTCCCGCGCCGTCAGCCCGCCCCCACTGCCGGACGCCTTGGACGAACTGCCGACGCCCCCCATCAGTGCAGTCGTGTCGCAGGTAATGAGGCCACGGTTTTCCTTGCTCTTCTTGAAGTGGGGCGTCTTGTCGCGGTGAAAGATTTCGACCCGGCGGATCGGCCATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8556#0 TCCATTTTGTAATTCCCATTTTTTTAATTGTTCAGGTAATGCAATGCGCCCTTTCCTAAT 60
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 CTCGCTTCTGGTGCGGTGCGGACTTGTGTTAGTATGGAGATGTTTGTGTGTGTATGTGTC 120
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 TGTGTGTTTTAAACGTATTTAAACTTATGAACCAGCCTTTTGATGTTACCCTCATTTTTG 180
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 CTTAGAGCATTATTTCATGTACCTTCTATAATCGCGCACACCCGCGCACTTCAGTTCCTA 240
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 CCGATTTTTTCTCTTTTCATTCGATTTCGCTCCTTATCACACACACACACACAGCATGTG 300
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 CTCTCTCTCTCGATCGATCTTCCAAAACATAGCCTTCCCCTTCCCTTTTCCTCCTCCTCC 360
consensus_8556#1 -------------------------------------------GTGTTTTTTCCTTCTTC 17
*** **** ** *
consensus_8556#0 TCCTCCTTTTAATCGAGAATGCACTCTTGTGGCGCTACACACTATGAATTCCTTCCGAAG 420
consensus_8556#1 TTTATATCTTTATATATTCTAGCTGCTGGTGGTGGTGAATGCTGTTG-CTCTTCTTGC-- 74
* * ** ** * * ** **** * * * ** * ** * *
consensus_8556#0 ATACGTGTCCGATTCGTCACACCACCCCCTCTCCTACTACTGTCGGACGGTCACAACAAC 480
consensus_8556#1 -----TGCTTGGT--GCAACAGGAGGAGTTGTAGTAGTAGTAGTAG-TAGTTGCTGTTGT 126
** * * * *** * * * ** ** * * ** *
consensus_8556#0 AACAACACTGTCGGTGGCACCACCACCCCGAGGACGGGGACGGGTGTGGTTGATGTTTAG 540
consensus_8556#1 TGTTGTGGTGATGGTGGTATAAGAA-----AGTGCTGTAATATGTGTGGCCGGCGCCTAC 181
** ***** * * * ** * * * ****** * * **
consensus_8556#0 TCCTCTTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCG 600
consensus_8556#1 TGCTGATGCTGCT-----GCTGCTGC-TGCTACGGCTGATTCTGGTACCGTCGTTTACTG 235
* ** * *** * * ** **** * ** * ***** * * ** *
consensus_8556#0 CCCCAGCCCCAGGTCGGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATC 660
consensus_8556#1 CTT----TTTTACTGCTGTGGCTGCTGCTGCTGCTGCTGCT--CCCCGTCGCCGACGATA 289
* * ****** * * ** * *** * * * * * *****
consensus_8556#0 TCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGA-A 719
consensus_8556#1 GGCT--GGCCTCGG----AGATGCAGGACGAAGACGAGCCCGACGACGACGTGGACAGCG 343
** * * ** **** * ** * * * * *** ** ** **
consensus_8556#0 CGCCGTCGTCAG-GTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGA 778
consensus_8556#1 CTTCGTCGTCCGAGTTGGAGCCCGATACGAGCGCCTCACCCGCTCCCTCCTTCAGCG--- 400
* ******* * *** * * * * *** *** * * * **
consensus_8556#0 ACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCT 838
consensus_8556#1 -CAC-TGCCGGCA-TTGCGCGTAAACTCGCGGCGCTTTTCCCGCGCCGTCAGCCCGCCCC 457
*** ** ** * *** ** * **** * * *** * ** *
consensus_8556#0 CCGAGGGCGAGATGCTCTTATCGTACGGCTTAT-CTCCCCACTTGTG-GGCAGCGCTGTT 896
consensus_8556#1 C--ACTGCCGGACGCCTTGGACGAACTGCCGACGCCCCCCATCAGTGCAGTCGTGTCGCA 515
* * ** ** ** * ** ** ** * * ***** *** * * * *
consensus_8556#0 CACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGC 956
consensus_8556#1 GGT-AATGAGGCCACGGTTT---TCCTTGCTCTTCTTGA-AGTGGGGCGTCTTGTC--GC 568
* *** **** * * ** * * * ** * *** * * **
consensus_8556#0 GTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGC 1016
consensus_8556#1 GGTGA--AAGATTTCGACCCGGCGGATCGGCCATGT------------------------ 602
* ** ** ***** ** * * * * **
consensus_8556#0 CAGTGGC 1023
consensus_8556#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||