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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 706 fasta sequence
[CCGCCAGCATGAACGGTGTGAGTTTGTTTACTTGAGTCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTACACCGTGGGCAGATGGACAAATATCTCGACCCTGATGCGCAC]
[+] EMBL BM643762 [CCGCGAGCATGAACGGTGTGAGTTTGTTTACTTGAGTCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTC ]
[+] EMBL BM615507 [ CCGGCATGAACGGTGTGAGTTTGTTTACTTGAGTCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACTTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGGTGATCAAGGTGGTCAATCTGGATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGACGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTACACCGTGGGCAGATGGACAAATATCTCGA ]
[+] EMBL BM608482 [ ccGCATGAACGGTGTGAGTTTGTTTACTTGAGTCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTACACCGTGGGCAGATGGACAAATATCTCGA ]
[+] EMBL BX624049 [ TGTTTACTTGAGTCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATNACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGG ]
[+] EMBL BX622180 [ AACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTT TCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATC ]
[+] EMBL BX614036 [ AATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACTTATTGCGCG AATGCAACGGCACGGCTTCGATGACAAGCGGGTGATCAAGGTGGTCAATCTGGATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGACGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCTACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTACACCGTGGGCAGATGGACAAATATCTCGACCCTGATGCGCAC]
[+] EMBL BX627504 [ GACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACNAAGAGCTTCNCTACGGTCCGAATGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGNTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGT ]
[+] EMBL BM591881 [ CCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGCCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGCTTCTACACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAACACTAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGCATTGAATATCTCATCTAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGCCAAATCGAACTCTACACC ]
[+] EMBL BX604027 [ TCCACCTATTGCGCGACAGTGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTGGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGA ]
consensusID : consensus_8578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[GCCCGAGGTTAATCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAATGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGGCAATTCGTTGTGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTCAAGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGANGCCAACGTACACCGTGGGCAGCATGGACAAA]
[+] EMBL AL693424 [GCCCGAGGTTAATCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAATGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGGCAATTCGTTGTGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTCAAGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGANGCCAACGTACACCGTGGGCAGCATGGACAAA]
consensusID : consensus_8578#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[ATCGCCCGAGGTTTATCGATGACAGCGGATGATCAAGGTCGTCAATCTGGTATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCAAATGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTATACCGTGGGCACGATGGACAAATATCTCGACCTGATGCGCATGCACTGCTCGGCGAGGTAACAAACGAATCCGCGTGGGGACGCAAGTATCGCAAGCTGTCGGAAACGATCGGCATGCTGATTGAGGGACTTTAGTTTA]
[+] EMBL AL696282 [ATCGCCCGAGGTTTATCGATGACAGCGGATGATCAAGGTCGTCAATCTGGTATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCAAATGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTATACCGTGGGCACGATGGACAAATATCTCGACCTGATGCGCATGCACTGCTCGGCGAGGTAACAAACGAATCCGCGTGGGGACGCAAGTATCGCAAGCTGTCGGAAACGATCGGCATGCTGATTGAGGGACTTTAGTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8578#0 CCGCCAGCATGAACGGTGTGAGTTTGTTTACTTGAGTCTGGTTGCACGAAACATAATTGT 60
consensus_8578#1 ------------------------GCCCGAGGTTAATCTGGTTGCACGAAACATAATTGT 36
consensus_8578#2 ------------------------------------------------------------
consensus_8578#0 ACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGG 120
consensus_8578#1 ACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGG 96
consensus_8578#2 ------------------------------------------------------------
consensus_8578#0 CAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAA--GCGGATGATC 178
consensus_8578#1 CAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAT-GCGGATGATC 155
consensus_8578#2 --------------------------ATCGCCCGAGGTTTATCGATGACAGCGGATGATC 34
* ** * * ** ** * **********
consensus_8578#0 AAGGTCGTCAATCTGG-ATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACAT 237
consensus_8578#1 AAGGTCGTCAATCTGG-ATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACAT 214
consensus_8578#2 AAGGTCGTCAATCTGGTATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACAT 94
**************** ******* ***********************************
consensus_8578#0 CCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAA 297
consensus_8578#1 CCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAA 274
consensus_8578#2 CCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCAAA 154
********************************************************* **
consensus_8578#0 TGGTGGGCTGATATTTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCA 357
consensus_8578#1 TGGTGGGCTGATATTT-GTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCA 333
consensus_8578#2 TGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCA 214
**************** ** ****************************************
consensus_8578#0 GCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGA 417
consensus_8578#1 GCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGA 393
consensus_8578#2 GCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGA 274
************************************************************
consensus_8578#0 CGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAAGCGGG 477
consensus_8578#1 CGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGG 453
consensus_8578#2 CGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGG 334
*************************************** *************** ****
consensus_8578#0 CAATTCGTTG-GCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGG 536
consensus_8578#1 CAATTCGTTGTGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGG 513
consensus_8578#2 CAATTCGTTG-GCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGG 393
********** *************************************************
consensus_8578#0 TCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGA 596
consensus_8578#1 TCGACTCGCAGTTTATGATTGACGGTGCCAAGTTCAAGTCGGGAACGATGGCTGCATTGA 573
consensus_8578#2 TCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGA 453
********************************** ***********************
consensus_8578#0 GCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGA 656
consensus_8578#1 GCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGA 633
consensus_8578#2 GCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGA 513
************************************************************
consensus_8578#0 G--CAAAGTACACCGTGGGCAG-ATGGACAAATATCTCGACCCTGATGCGCAC------- 706
consensus_8578#1 NGCCAACGTACACCGTGGGCAGCATGGACAAA---------------------------- 665
consensus_8578#2 G--CAAAGTATACCGTGGGCACGATGGACAAATATCTCGACC-TGATGCGCATGCACTGC 570
*** *** ********** *********
consensus_8578#0 ------------------------------------------------------------
consensus_8578#1 ------------------------------------------------------------
consensus_8578#2 TCGGCGAGGTAACAAACGAATCCGCGTGGGGACGCAAGTATCGCAAGCTGTCGGAAACGA 630
consensus_8578#0 ------------------------------
consensus_8578#1 ------------------------------
consensus_8578#2 TCGGCATGCTGATTGAGGGACTTTAGTTTA 660
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||