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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1639 fasta sequence
[CCGCCGCGGGAAGGACGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGCTACAGCACGCAGCGCCATTAAACAAGTGTCCCAGTGATCGCGTCGATCAAGTAGAGAGTGTGATTTTTAATTGAATTTTGTTGCATAGCAGTGTACTTAATCCGTGTGAGCATAATGTGGAAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGCCGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCCTCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAATTTCCTGCTCGCTTCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGACGGCGTGCAGTACGATCCCACTACAACCTCGTCTCC-TTTTGTAGAGGTAACGACAGCTCCTCCGACCACGCTGGCACCGCTCCGTACGGCC-GACT-GCATCGGGCCGGACAATCGCGAAGGATACTGCATAAATATTCGAAGCTGCCCGGATGT-GTTGAATGAGTTCGTCCAGCGTCAGCGCGACCCACAGTACGTGCAGTACATCCGCCAGTC-GAATGCCGTGTGCAACTACATCCAGCCAAACGTGTGCTGCCCGCTGCAGAAGTCAGCTCCGCCTGCACCACCGACCGCACCACCTACTGCACCACCGACGGCTCCTCCGCCACCGCCGCCACCGCCACCAGCACCGGTTACCCAAGCTCCACCTGCACCAGCGCCGTCCAGCGGGCCGGCTGAGTTGCTTACGCCGGAAACGGGCTGCGGATACAGCACGGTGCAGCACAACCGTGTGGTTGGCGGTGTTCCGGCCGAATTGAATGGATGGCCCTGGATGGCGCTGGTCGGGTATAAGAATACGCTCGGCGAGGTTTCGTTCAAGTGTGGCGGTTCGCTCATTACCAAGCGCCACGTACTGACGGCGGCTCACTGTATTCGGCGCGATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACATACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAGAACTTCATCGGCTACACCCCGTTCGTGGCGGGCTGGGGACGCACCCAGGAGGGTGGCAAGTCGGCCAACGTGCTGCAGGAGCTGCAGATT-CCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGACAAGATCGGGAAGGTGTTTTCGCAGAAGCAGTTCGACAACGCGGTCATGTGTGCCGGTGTGATCGAGGGCGGCAAGGATTCGTGCCAGGGCGACAGTGGTGGGCCGCTGATGTTGCCGCAACGATTCGGTACCGAGTTTTACTACTACCAGGTCGGCATCGTGTCGTACGGTATCGGATGCGCTCGTGCGGAAGTGCCCGGCGTTTATACGCGCGTGGCCAGCTTCGTCGATTGGATACAGCAGAAGGTTGCGGAACCGCTGTAAGGCCTTCTGCGCT]
[+] EMBL BM584683 [ CCGCGGGAAGGACGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGCTACAGCACGCAGCGCCATTAAACAAGTGGCCCAGTGATCGCGTCGATCAAGTAGAGAGTGTGATTTTTAATTGAATTTTGTTGCATAGCAGTGTACTTAATCCGTGTGAGCATAATGTGGAAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGCCGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCCTCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAATTTCCTGCTCGCTTCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGACGGCGTGCAGTACGATCCCACTACAACCTCGTCTCCTTTTTGTAGAGGTAACGACAGCTCCTCCGACCACGCTGGCACCGCTCCGTACGGCCGGACTGGCATCGGGCCGGACAATCGCGAAGGATACTGCATAAATATTCGAGCCTGCCCGGATGTGGTTGAATGAGTTCGTCC ]
[+] EMBL BM657563 [ CCGCGGGAAGGACGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGCTACAGCACGCAGCGCCATTAAACAAGTGTCCCAGTGATCGCGTCGATCAAGTAGAGAGTGTGATTTTTAATTGAATTTTGTTGCATAGCAGTGTACTTAATCCGTGTGAGCATAATGTGGAAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGCCGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCCTCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAATTTCCTGCTCGCTTCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGACGGCGTGCAGTACGATCCCACTACAACCTCGTCTCC TTTTGTAGAGGTAACG ]
[+] EMBL BM587794 [ccggacCGGGAAGGACGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGTTACAGCACGCAGCGCCATTAAACAAGTGTCCCAGTGATCGCGTCGATCAAGTAGAGAGTGTGATTTTTATTTGAATTTTGTTGCAAAGCAGTGTACTTAATCCGTGTGAGCATAATGTGGAAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGCCGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCCTCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAACTTCCTGCTCGCTTCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGACGGCGTGCAGTACGATCCCACTACAACCTCGTCTCC TTTTGTAGAGGTAACGACAGCTCCTCCGACCACGCTGGCACCGCTCCGTACGGCC GACT GCATCGGGCCGGACAATCGCGAAGGATACTGCATAAATATTCGAAGCTGCCCGGATGT GTTGAATGAGTTCGTCCAGCGTCAGCGCGACCCACAGTACGTGCAGTACATCCGCCAGTCGGAATGCCGTGTGCAACTACA ]
[+] EMBL BM578771 [ ccgCGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGTTACAGCACGCAGCGCCATTAAACAAGTGTCCCAGTGATCGCGTCGATCAAGTAGAGAGTGTGATTTTTATTTGAATTTTGTTGCAAAGCAGTGTACTTAATCCGTGTGAGCATAATGTGGAAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGCCGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCCTCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAACTTCCTGCTCGCTTCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGACGGCGTGCAGTACGATCCCACTACAACCTCGTCTCC TTTTGTAGAGGTAACGACAGCTCCTCCGACCACGCTGGCACCGCTCCGTACGGCC GACT GCATCGGGCCGGACAATCGCGAAGGATACTGCATAAATATTCGAAGCTGCCCGGATGT GTTGAATGAGTTCGTCCAGCGTCAGCGCGACCCACAGTACGTGCAGTACATCCGCCAGTC GAATGCCGTGTGCAACTACATC ]
[+] EMBL BX616149 [ TCCTCCTACCATGCTGGCACCGCTCCGTACGGCC GACT GCATCGGGCCGGACAATCGCGAAGGATACTGCATAAATATTCGAAGCTGCCCGGATGT GTTGAATGAGTTCGTCCAGCGTCAGCGCGACCCACAGTACGTGCAGTACATCCGCCAGTC GAATGCCGTGTGCAACTACATCCAGCCAAACGTGTGCTGCCCGCTGCAGAAGTCAGCTCCGCCTGCACCACCGACCGCACCACCTACTGCACCACCGACGGCTCCTCCGCCACCGCCGCCACCGCCACCAGCACCGGTTACCCAAGCTCCACCTGCACCAGCGCCGTCCAGCGGGCCGGCTGAGTTGCTTACGCCGGAAACGGGCTGCGGATACAGCACGGTGCAGCACAACCGTGTGGTTGGCGGTGTTCCGGCCGAATTGAATGGATGGCCCTGGATGGCGCTGGTCGGGTATAAGAATACGCTCGGCGAGGTTTCGTTCAAGTGTGGCGGTTCGCTCATTACCAAGCGCCACGTACTGACGGCGGCTCACTGTATTCGGCGCGATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACACACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAG ]
[+] EMBL BX615420 [ GTCAGCGCGACCCACAGTACGTGCAGTACATCCGCCAGTC GAATGCCGTGTGCAACTACATCCAGCCAAACGTGTGCTGCCCGCTGCAGAAGTCAGCTCCGCCTGCACCACCGACCGCACCACCTACTGCACCACCGACGGCTCCTCCGCCACCGCCGCCACCGCCACCAGCACCGGTTACCCAAGCTCCACCTGCACCAGCGCCGTCCAGCGGGCCGGCTGAGTTGCTTACGCCGGAAACGGGCTGCGGATACAGCACGGTGCAGCACAACCGTGTGGTTGGCGGTGTTCCGGCCGAATTGAATGGATGGCCCTGGATGGCGCTGGTCGGGTATAAGAATACGCTCGGCGAGGTTTCGTTCAAGTGTGGCGGTTCGCTCATTACCAAGCGCCACGTACTGACGGCGGCTCACTGTATTCGGCGCGATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCC ]
[+] EMBL BM622393 [ ccgAGCGCCGTCCAGCGGGCCGGCTGAGTTGCTAACCCCCGAAACGGGCTGCGGATACAGCACGGTGCAGCACAACCGTGTGGTTGGCGGTGTTCCGGCCGAACTGAATGGATGGCCCTGGATGGCGCTGGTCGGGTATAAGAATACGCTCGGCGAGGTTTCGTTCAAGTGTGGCGGTTCGCTCATTACCAAGCGCCACGTACTGACGGCGGCTCACTGTATTCGGCGCGATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCAGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACACACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAGAACTTCATCGGCTACACTCCGTTCGTGGCGGGCTGGGGACGCACCCAGGAGGGTGGCAAGTCGGCCAACGTGCTGCAGGAGCTGCAGATT CCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGACAAGATCGGGAAGGTGTTTTCGCAGAAGCAGTTCGACAACGCGGTCATGTGTGCCGGTGTGATCGACGGCGGCA ]
[+] EMBL BX619191 [ GTTCGCTCATTACCAAGCGCCACG ACTGACGGCGGCTCACTGTATTCGGCGCGATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACATACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAAAACTTCATCGGCTACACCCCGTTCGTGGCGGGCTGGGGACGCACCCAGGAGGGTGGTAAGTCGGCCAACGTGCTGCAGGAGCTGCAGATTCCCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGAC ]
[+] EMBL BM579501 [ ccGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACATACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAAAACTTCATCGGCTACACCCCGTTCGTGGCGGGCTGGGGACGCACCCAGGAGGGTGGTAAGTCGGCCAACGTGCTGCAGGAGCTGCAGATT CCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGACAAGATCGGGAAGGTGTTTTCGCAGAAGCAGTTCGACAACGCGGTCATGTGTGCCGGTGTGATCGAGGGCGGCAAGGATTCGTGCCAGGGCGACAGTGGTGGGCCGCTGATGTTGCCGCAACGATTCGGTACCGAGTTTTACTACTACCAGGTCGGCATCGTGTCGTACGGTATCGGATGCGCTCGTGCGGAAGTGCCCGGCGTTTATACGCGCGTGGCCAGCTTCGT ]
[+] EMBL BM649290 [ ccgccagTACGAATCTCATCCATCGTATGACAAAAAGGACGGACATACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAGAACTTCATCGGCTACACCCCGTTCGTGGCGGGCTGGGGACGCACCCAGGAGGGTGGCAAGTCGGCCAACGTGCTGCAGGAGCTGCAGATT CCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGACAAGATCGGGAAGGTGTTTTCGCAGAAGCAGTTCGACAACGCGGTCATGTGTGCCGGTGTGATCGAGGGCGGCAAGGATTCGTGCCAGGGCGACAGTGGTGGGCCGCTGATGTTGCCGCAACGGTTCGGTACCGAGTTCCACTACTACCAGGTCGGCATCGTGTCGTACGGTATCGGATGCGCTCGTGCGGAAGTGCCCGGCGTTTATACGCGCGTGGCCAGCTTCGTCGATTGGATACAGCAGAAGGTTGCGGAACCGCTGTAAGGCCTTCTGCGCT]
consensusID : consensus_8625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence
[AGAAGTCAGCTCCGCCGGCACCACCGACCGCACCACCTACGGCACCACCTACGGCACCACCGACGGCTCCTCCGCCACCGCCACCAGCACCGGTCACCCAGGCTCCACCCGCACCAGCGCCGTCCAGCGGGCCGGCGGAGTCGCTAACGCCGGAAACGGGCTGCGGATACAGCACGGT]
[+] EMBL BX611335 [AGAAGTCAGCTCCGCCGGCACCACCGACCGCACCACCTACGGCACCACCTACGGCACCACCGACGGCTCCTCCGCCACCGCCACCAGCACCGGTCACCCAGGCTCCACCCGCACCAGCGCCGTCCAGCGGGCCGGCGGAGTCGCTAACGCCGGAAACGGGCTGCGGATACAGCACGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8625#0 CCGCCGCGGGAAGGACGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGC 60
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 TACAGCACGCAGCGCCATTAAACAAGTGTCCCAGTGATCGCGTCGATCAAGTAGAGAGTG 120
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 TGATTTTTAATTGAATTTTGTTGCATAGCAGTGTACTTAATCCGTGTGAGCATAATGTGG 180
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 AAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGC 240
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 CGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCC 300
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 TCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAATTTCCTGCTCGCT 360
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 TCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGAC 420
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 GGCGTGCAGTACGATCCCACTACAACCTCGTCTCCTTTTGTAGAGGTAACGACAGCTCCT 480
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 CCGACCACGCTGGCACCGCTCCGTACGGCCGACTGCATCGGGCCGGACAATCGCGAAGGA 540
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 TACTGCATAAATATTCGAAGCTGCCCGGATGTGTTGAATGAGTTCGTCCAGCGTCAGCGC 600
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 GACCCACAGTACGTGCAGTACATCCGCCAGTCGAATGCCGTGTGCAACTACATCCAGCCA 660
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 AACGTGTGCTGCCCGCTGCAGAAGTCAGCTCCGCCTGCACCACCGACCGCACCACCTACT 720
consensus_8625#1 -------------------AGAAGTCAGCTCCGCCGGCACCACCGACCGCACCACCTACG 41
**************** ***********************
consensus_8625#0 GCACCACCGACGGCTCCTCCGCCA---CCGCCGCCACCGCCACCAGCACCGGTTACCCAA 777
consensus_8625#1 GCACCACCTACGGCACCACCGACGGCTCCTCCGCCACCGCCACCAGCACCGGTCACCCAG 101
******** ***** ** *** * ** *********************** *****
consensus_8625#0 GCTCCACCTGCACCAGCGCCGTCCAGCGGGCCGGCTGAGTTGCTTACGCCGGAAACGGGC 837
consensus_8625#1 GCTCCACCCGCACCAGCGCCGTCCAGCGGGCCGGCGGAGTCGCTAACGCCGGAAACGGGC 161
******** ************************** **** *** ***************
consensus_8625#0 TGCGGATACAGCACGGTGCAGCACAACCGTGTGGTTGGCGGTGTTCCGGCCGAATTGAAT 897
consensus_8625#1 TGCGGATACAGCACGGT------------------------------------------- 178
*****************
consensus_8625#0 GGATGGCCCTGGATGGCGCTGGTCGGGTATAAGAATACGCTCGGCGAGGTTTCGTTCAAG 957
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 TGTGGCGGTTCGCTCATTACCAAGCGCCACGTACTGACGGCGGCTCACTGTATTCGGCGC 1017
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 GATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACAC 1077
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 ATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACAT 1137
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 ACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCC 1197
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 ATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAGAACTTCATCGGCTACACCCCGTTC 1257
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 GTGGCGGGCTGGGGACGCACCCAGGAGGGTGGCAAGTCGGCCAACGTGCTGCAGGAGCTG 1317
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 CAGATTCCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGACAAGATCGGGAAGGTG 1377
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 TTTTCGCAGAAGCAGTTCGACAACGCGGTCATGTGTGCCGGTGTGATCGAGGGCGGCAAG 1437
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 GATTCGTGCCAGGGCGACAGTGGTGGGCCGCTGATGTTGCCGCAACGATTCGGTACCGAG 1497
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 TTTTACTACTACCAGGTCGGCATCGTGTCGTACGGTATCGGATGCGCTCGTGCGGAAGTG 1557
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 CCCGGCGTTTATACGCGCGTGGCCAGCTTCGTCGATTGGATACAGCAGAAGGTTGCGGAA 1617
consensus_8625#1 ------------------------------------------------------------
consensus_8625#0 CCGCTGTAAGGCCTTCTGCGCT 1639
consensus_8625#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||