cluster # 864

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Anopheles gambiae
cluster # 864 cluster # 864 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_864#0 length = 640 sequences # 1

consensus_864#1 length = 610 sequences # 1

consensusID : consensus_864#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [CCGCCCACGCGTCCGGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTTTAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTTATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCTTCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGACGCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTTAATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGTGAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCGAACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAACCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGTTGCTTAAGTCAACTTGAGCACAGACAGAATAATAATAGCTGTAATGGAAAGAAGGATTAACACTTTCGAATGTTGTTTGTTGAAGATGTTTGTTTAAAGCAGC]

[+] EMBL BM641120             [CCGCCCACGCGTCCGGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTTTAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTTATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCTTCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGACGCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTTAATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGTGAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCGAACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAACCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGTTGCTTAAGTCAACTTGAGCACAGACAGAATAATAATAGCTGTAATGGAAAGAAGGATTAACACTTTCGAATGTTGTTTGTTGAAGATGTTTGTTTAAAGCAGC]




>consensus_864#0
CCGCCCACGCGTCCGGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTTTAG
TAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTTATG
CTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCTTCC
AGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGACGCG
TAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTTAAT
CCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGTGAA
ATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCGAAC
CGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAACCA
GCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGTTGC
TTAAGTCAACTTGAGCACAGACAGAATAATAATAGCTGTAATGGAAAGAAGGATTAACAC
TTTCGAATGTTGTTTGTTGAAGATGTTTGTTTAAAGCAGC

consensusID : consensus_864#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [CCGCCCACGCGTCCGCGCTTGCGGTGGAGTGAGGTGGCACCTCCTCCGCCCTAGAGTTAGTAAGCGAGCAGCAGCGAGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTTTAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTTATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCTTCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGACGCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTTAATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGTGAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCGAACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAACCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGTTGCTTAAGTCA]

[+] EMBL BM616451             [CCGCCCACGCGTCCGCGCTTGCGGTGGAGTGAGGTGGCACCTCCTCCGCCCTAGAGTTAGTAAGCGAGCAGCAGCGAGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTTTAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTTATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCTTCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGACGCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTTAATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGTGAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCGAACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAACCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGTTGCTTAAGTCA]




>consensus_864#1
CCGCCCACGCGTCCGCGCTTGCGGTGGAGTGAGGTGGCACCTCCTCCGCCCTAGAGTTAG
TAAGCGAGCAGCAGCGAGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTTT
AGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTTA
TGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCTT
CCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGACG
CGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTTA
ATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGTG
AAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCGA
ACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAAC
CAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGTT
GCTTAAGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_864#0      ------------------------------------------------------------
consensus_864#1      CCGCCCACGCGTCCGCGCTTGCGGTGGAGTGAGGTGGCACCTCCTCCGCCCTAGAGTTAG 60
                                                                                 

consensus_864#0      ---CCGCCCACGCGTCCGGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTT 57
consensus_864#1      TAAGCGAGCA-GCAGCGAGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTT 119
                         **  ** **  *  ******************************************

consensus_864#0      TAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTT 117
consensus_864#1      TAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTT 179
                     ************************************************************

consensus_864#0      ATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCT 177
consensus_864#1      ATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCT 239
                     ************************************************************

consensus_864#0      TCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGAC 237
consensus_864#1      TCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGAC 299
                     ************************************************************

consensus_864#0      GCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTT 297
consensus_864#1      GCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTT 359
                     ************************************************************

consensus_864#0      AATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGT 357
consensus_864#1      AATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGT 419
                     ************************************************************

consensus_864#0      GAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCG 417
consensus_864#1      GAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCG 479
                     ************************************************************

consensus_864#0      AACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAA 477
consensus_864#1      AACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAA 539
                     ************************************************************

consensus_864#0      CCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGT 537
consensus_864#1      CCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGT 599
                     ************************************************************

consensus_864#0      TGCTTAAGTCAACTTGAGCACAGACAGAATAATAATAGCTGTAATGGAAAGAAGGATTAA 597
consensus_864#1      TGCTTAAGTCA------------------------------------------------- 610
                     ***********                                                 

consensus_864#0      CACTTTCGAATGTTGTTTGTTGAAGATGTTTGTTTAAAGCAGC 640
consensus_864#1      -------------------------------------------